mRNA_E-fasciculatus_F_contig14.2930.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: A0A6H5L318_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L318_9PHAE) HSP 1 Score: 359 bits (922), Expect = 1.320e-123 Identity = 182/195 (93.33%), Postives = 185/195 (94.87%), Query Frame = 1
Query: 124 MVALSWGCRLIAGRT--EACSVSVLSLLLLLACAVPGVSFIQGRGIVRQRTFSYGVGRIGRLQASSKGAYPPPSRRLRGRGLCMDARSCAPEITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 702
MVALSWGCRLIAGRT EACSV LLLLLACA PGVSFIQGRG+ RQRTFSYGVGRIGRLQASSKGAYPPPSRRLRGRGLCMDA SCAPEITDDSFEAEVL+EDRPVLVFFRAPWCGPCRMVGPIVDEVIA+HG KLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL
Sbjct: 1 MVALSWGCRLIAGRTAGEACSV----LLLLLACATPGVSFIQGRGMARQRTFSYGVGRIGRLQASSKGAYPPPSRRLRGRGLCMDASSCAPEITDDSFEAEVLDEDRPVLVFFRAPWCGPCRMVGPIVDEVIADHGSKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 191
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: D7G7W3_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W3_ECTSI) HSP 1 Score: 224 bits (571), Expect = 2.020e-71 Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1
Query: 367 MDARSCAPEITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 702
MDARSCAPEITDDSFEAEVL+EDRPVLVFFRA WCGPCRMVGPIVDEVIA+HGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL
Sbjct: 1 MDARSCAPEITDDSFEAEVLDEDRPVLVFFRAAWCGPCRMVGPIVDEVIADHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 112
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: A0A524RKQ5_9CYAN (Thioredoxin n=2 Tax=Aphanocapsa feldmannii TaxID=192050 RepID=A0A524RKQ5_9CYAN) HSP 1 Score: 135 bits (339), Expect = 1.780e-36 Identity = 64/106 (60.38%), Postives = 80/106 (75.47%), Query Frame = 1
Query: 379 SCAPEITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 696
S A +TDDSFE EVL D PVL+ F APWCGPCRMV PIVDE+ +E G++KV++L TDENP +++ IR+IPTLMLF + V TVVGAVPK+ L S+I KH+
Sbjct: 2 SSAAAVTDDSFEVEVLKSDIPVLIDFWAPWCGPCRMVAPIVDEIASEFAGRIKVVKLNTDENPNVASQYGIRSIPTLMLFKAGQRVDTVVGAVPKNTLSSTITKHL 107
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: A0A1L5YCU0_9EUKA (Thioredoxin n=2 Tax=Paulinella TaxID=39716 RepID=A0A1L5YCU0_9EUKA) HSP 1 Score: 134 bits (336), Expect = 5.170e-36 Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 1
Query: 379 SCAPEITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMD 699
S A ++TD SFE E+L D PVLV F APWCGPCRM+ PIVDE+ E GKL+V +L TDENP +++ IR+IPTLM+FSD + V TVVGAVPK+ L +I+KH+
Sbjct: 2 SSAADVTDASFETEILKSDVPVLVDFWAPWCGPCRMLAPIVDEIAKEFAGKLRVFKLNTDENPSIASQYGIRSIPTLMIFSDGQKVDTVVGAVPKATLSVTIEKHIS 108
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: A0A1G4NTQ2_9FLOR (Thioredoxin n=13 Tax=Nemaliales TaxID=2807 RepID=A0A1G4NTQ2_9FLOR) HSP 1 Score: 131 bits (330), Expect = 4.340e-35 Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 1
Query: 391 EITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMD 699
++ D +F EVLN D+PVLV F APWCGPCRMV P+VDE+ E+ +KV++L TDENP T E+ IR+IPTLM+F D V TV+GAVPKS L S++ K++D
Sbjct: 5 QVMDSTFNEEVLNHDQPVLVDFWAPWCGPCRMVAPVVDEIAHEYSESIKVVKLNTDENPSTATEYGIRSIPTLMIFKDGGRVDTVIGAVPKSTLASTLNKYLD 107
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: B1X5G8_PAUCH (Thioredoxin n=1 Tax=Paulinella chromatophora TaxID=39717 RepID=B1X5G8_PAUCH) HSP 1 Score: 131 bits (330), Expect = 4.470e-35 Identity = 63/110 (57.27%), Postives = 82/110 (74.55%), Query Frame = 1
Query: 367 MDARSCAPEITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 696
M+ S A ++TD SFE E+L + PVLV F APWCGPCRM+ PIVDE+ E GKLKV +L TDENP +++ IR+IPTLM+F++ + V TVVGAVPKS L +I+KH+
Sbjct: 1 MEKMSSAADVTDASFETEILMSNIPVLVDFWAPWCGPCRMLAPIVDEIAKEFEGKLKVFKLNTDENPTIASQYGIRSIPTLMIFNEGQKVDTVVGAVPKSTLSVTIEKHV 110
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: A0A4D6BL56_9FLOR (Thioredoxin n=1 Tax=Balbiania investiens TaxID=111861 RepID=A0A4D6BL56_9FLOR) HSP 1 Score: 131 bits (330), Expect = 4.890e-35 Identity = 58/103 (56.31%), Postives = 77/103 (74.76%), Query Frame = 1
Query: 391 EITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMD 699
++ D +F+ EVLN PVLV F APWCGPCRMV P+VDE+ E+ G +KV+ + TDENP T E+ IR+IPTLM+F D K V TV+GAVPKS L +++ K++D
Sbjct: 5 QVIDSTFQEEVLNHKLPVLVDFWAPWCGPCRMVAPVVDEIANEYNGSIKVVTINTDENPSTATEYGIRSIPTLMIFKDGKRVDTVIGAVPKSTLATALNKYLD 107
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: K9SGU7_9CYAN (Thioredoxin n=2 Tax=unclassified Pseudanabaena TaxID=2593292 RepID=K9SGU7_9CYAN) HSP 1 Score: 131 bits (329), Expect = 5.940e-35 Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 1
Query: 379 SCAPEITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMD 699
S A +TD SFE +VL D PVLV F APWCGPCRMV P+VDEV ++ GK+KV++L TDENP +++ IR+IPTLMLF + V VVGAVPK+ L ++I+KH+D
Sbjct: 2 SSAIAVTDASFETDVLASDVPVLVDFWAPWCGPCRMVAPVVDEVAEQYDGKIKVVKLNTDENPNVASQYGIRSIPTLMLFKGGQRVDVVVGAVPKTTLANTIEKHLD 108
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: A0A1D8TLH5_9CYAN (Thioredoxin n=1 Tax=Moorena producens PAL-8-15-08-1 TaxID=1458985 RepID=A0A1D8TLH5_9CYAN) HSP 1 Score: 130 bits (326), Expect = 1.570e-34 Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1
Query: 379 SCAPEITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 696
S A +TD SF+AEVL D PVLV F APWCGPCRMV P+V+E+ ++G K+KV++L TDENPK E+ IR+IPTLM+F + V VVGAVPK+ L ++++KH+
Sbjct: 2 SNAAPVTDSSFQAEVLESDIPVLVDFWAPWCGPCRMVAPVVEEIAQQYGDKVKVVKLNTDENPKVAGEYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLANTLEKHL 107
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Match: A0A3S1BWD7_ANAVA (Thioredoxin n=1 Tax=Trichormus variabilis SAG 1403-4b TaxID=447716 RepID=A0A3S1BWD7_ANAVA) HSP 1 Score: 130 bits (326), Expect = 1.570e-34 Identity = 57/106 (53.77%), Postives = 83/106 (78.30%), Query Frame = 1
Query: 379 SCAPEITDDSFEAEVLNEDRPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHM 696
S A ++TD SF+ EV+N D PVLV F APWCGPCRMV P+VDE+ +++ G+LKV+++ TDENP+ ++ IR+IPTLM+F D + V VVGAVPK+ L ++++K++
Sbjct: 2 SAATQVTDSSFDQEVINSDVPVLVDFWAPWCGPCRMVAPVVDEIASQYEGQLKVVKVNTDENPQVAGKYGIRSIPTLMIFKDGQKVDMVVGAVPKTTLATTLEKYL 107 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14.2930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14.2930.1 >prot_E-fasciculatus_F_contig14.2930.1 ID=prot_E-fasciculatus_F_contig14.2930.1|Name=mRNA_E-fasciculatus_F_contig14.2930.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=194bp MVALSWGCRLIAGRTEACSVSVLSLLLLLACAVPGVSFIQGRGIVRQRTFback to top mRNA from alignment at E-fasciculatus_F_contig14:26313..28518+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14.2930.1 ID=mRNA_E-fasciculatus_F_contig14.2930.1|Name=mRNA_E-fasciculatus_F_contig14.2930.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2206bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14:26313..28518+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14:26313..28518+ >mRNA_E-fasciculatus_F_contig14.2930.1 ID=mRNA_E-fasciculatus_F_contig14.2930.1|Name=mRNA_E-fasciculatus_F_contig14.2930.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1164bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14:26313..28518+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |