mRNA_E-fasciculatus_F_contig14.2927.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14.2927.1 vs. uniprot
Match: D7G7W0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7W0_ECTSI) HSP 1 Score: 1995 bits (5169), Expect = 0.000e+0 Identity = 1113/1374 (81.00%), Postives = 1160/1374 (84.43%), Query Frame = 2
Query: 146 MIDVEEIDDNSSQEATLPPATLASTTKKRTKTKKDSPAVAPSSTLTRFLGPAGPPSRSAWDDVNRQCPVCQQTGFSSRSLALHVNDCLDQGRRARADASDGESAASREKDAGGGXXXXXXXXSTATTKTAVVGKEASSAVTDVTGSASREGNTRRMPREGTLKGKAKHRRGGEQQLRQDKAAKKPKTLQGGRAIDTEKAASDTTKARVSHTRNQAADKTKSSTGAAPQHRLPNSTQSSSPDGSQQPTPLRRRALGLARPRGHQIVSDAMPTPAAAAASDASRARKGCDSRALDEIAQAQLLYLREASTCGPAHGGGWLGTQLFPTPDEDEESADDGSMDCCCVGTGGGEGAYRSSYGVDECRAGRNETMRNENRRVRGRPASWGTRPSDEQRGWFGTWPAGGSVDDGDVDCWGDGDGYLTLKPFPPPEMLVESDGEDESDGGGTVVPADATQSMPLGEEGSPAPSSRADRFLQVFSRLQPARRALRLYEPPXXXXXXXXXXQDSGDSRANAKVKKVEIRSPPTAVAPTNKNTSASNLGPQQAERPGGSPTMRPFVEIEPGGIGDSARTGTARSCEGERVRELTTPPPKRTALETISDASAKNNQRPSATTASSPVRSTSPAVIASFKPVSGHTFSRKQPLEERPRQQRQPAQRSGEEGSRRHEQEDRNRTSSEGASRNCFLPAPTVRRTSTYEVQAFSGGNVENSVSVRSGKSPRVVETPAERNEAANESAADATAPSSVGSERVTSAP-----------------------------QTRPPVAVTNENLTIGEHRKRTAHVDCAPVDATTHGVPQPPPRYGSSTSVDRMKRCMPGASVAKKRASRSHERNVEVSTTDAGGHRRSQRDPQPGLQRETPTSSQWSGSRSRGALASRASSGLLRSADFTARSGNQHTEHEGAKVAPAANDGVVDLAGSNSSQLEECEGRKADVPQKGSLTVVWEHGATLRDSWSIDSSHELGRLAFGALLDYDAVWYLSPADADCVGVLRYRVVPHPRLAPTGGWISGSGRLQDDPYVIVKAEAAPSVRPSKAASAMASRDRGDERGGSVQRQPHLNPHH-QGRVGVEGLAKSTHGAGDSGYTTATPSRGHAGRSRGTSGTHGRHAERYEPAAESHTDRVSAGPAADGGRRAQPQFPSRVLPKAVSAGGSFGLATSPSAKALAANDSGDKVTCPVCNRGMDHWKSGQRQQHVHACLMKQPSSAKTTRPAGDVTPSASRPSGIAHRSSLQFDGSSDPGESTTPRPERGPAVRRTEGTGSSANRQEGPPGPSEGPRSTRVSLQGVFSPKPARGPDGTNSVSASRGTAPAWGPATAGRASSSKGLPACPVCGLSFGGRQGQWERQAHVQQCLDSAWEP 4177
M+D EEIDDNSSQEA LPPATL TKKRTKTKKDSPAVAPSSTLTRFLGPAGPPSRSAWDDVNRQCPVCQQTGFSSRSLALHVNDCL+ RRARADASD ESAA KDA GG +TAT T VG EASSAVTDVTGS SREGNTRRM REGT K KA H RGGE+Q+RQDKAAKK KTLQG RAIDTE+AAS T+KARVSHTRNQAADKTKS+T AA QHRLPNSTQSSSPDGSQQP PLRRRALGLARP+GHQIVSDAMPTPAAA S+ASRARKGCDSRALDEIAQAQLLYLREAS GPAHGGGWLGT+LFP PDE+ ESADDGSMDC CVGTGGGEGAYRSS GV EC GRN MR ENRRVRGRPASWG RP+DEQ GWFGTWPAGGSVDDG VDCWGDGDGYLTLK FPPPE LVESDGEDE DGGG V+P DA +SM LGEEGSPAPSSR DRFLQVFSRLQPARRALRL+EPP XXX QDSGD+RANAKVK V RSPPTAVAPTNKNT AS+ GPQQAERPGGSPTMRP VE EPGG G+SARTGTARSCEGERVRELT PPPKRTALETIS+ SA NN+RP AT ASSPV+STSPA+IASFK VSGH SRKQP +E P QQR+PA RSGEEGSRRHEQEDRNRTSSEG+SR LPAPTVRRTST+EVQA SGG VENSVS G SPRVV+TPA+ NESAADA + QTR PVAV NENLTIGEHRKRTAHVD APVDATTHGVPQPPPR+GSST D +KR MPGA+VAKKRAS SHERNV VS+ DAGGHRRSQRDP PGLQR PTSSQW+GSRSRGALASRASSGLLRSAD ARS NQ E+E AKVAPAANDGVVDLAGSNSSQLEECEGRKADV QKGSLTVVWEHGATLRDSWSIDSSHELGRLAFGALLDYDAVWYLSPAD DCVGVLRY VVPHPRLAPTGGWISGSGRL+DDPY+IVKAEAAPS+RPSKAAS RDRGD RGGS QRQP+L+PHH QGRVGVEGL KSTHGA D GYT A PSRGHAGRSRGT+ AERYEPA ESH+DRVSAGP A+GGRR QPQ PSRVLPKAVSAGGSFGLATSPSAKAL ANDSGDKVTCPVCNRGMDHWKSGQRQQHVHACLMKQPSSAK TR AGD TPSASRPSGI HRSSLQFDGSSDPGESTTPRPER P VRRTEGTGSSANRQEGP GPSEGPRS+RVSLQGVFSPKPAR PDGTN+VSASRGTAP KGL CPVCG+SFGGRQGQWERQAHVQQCLDSAWEP
Sbjct: 1 MMDAEEIDDNSSQEANLPPATLTLATKKRTKTKKDSPAVAPSSTLTRFLGPAGPPSRSAWDDVNRQCPVCQQTGFSSRSLALHVNDCLE--RRARADASDSESAAGGRKDAAGGVGNPDGR-NTATATT--VGNEASSAVTDVTGSGSREGNTRRMSREGTPKSKAVHGRGGEKQVRQDKAAKKTKTLQGERAIDTERAASATSKARVSHTRNQAADKTKSNTRAALQHRLPNSTQSSSPDGSQQPNPLRRRALGLARPKGHQIVSDAMPTPAAA--SNASRARKGCDSRALDEIAQAQLLYLREASARGPAHGGGWLGTKLFPAPDEEGESADDGSMDCWCVGTGGGEGAYRSSCGVGECGTGRNTRMRKENRRVRGRPASWGARPNDEQWGWFGTWPAGGSVDDGGVDCWGDGDGYLTLKAFPPPETLVESDGEDERDGGGAVMPVDAARSMRLGEEGSPAPSSRVDRFLQVFSRLQPARRALRLHEPPTPXXXP----QDSGDNRANAKVKNVGTRSPPTAVAPTNKNTVASSSGPQQAERPGGSPTMRPSVEREPGGAGNSARTGTARSCEGERVRELTMPPPKRTALETISEVSANNNRRPGATIASSPVQSTSPAIIASFKSVSGHKISRKQPPQEPP-QQRKPANRSGEEGSRRHEQEDRNRTSSEGSSRKLSLPAPTVRRTSTFEVQACSGG-VENSVSAPKGNSPRVVKTPAKIYGPPNESAADAASQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTRRPVAVANENLTIGEHRKRTAHVDRAPVDATTHGVPQPPPRHGSSTGSDEVKRSMPGATVAKKRASSSHERNVRVSSMDAGGHRRSQRDPPPGLQRAIPTSSQWNGSRSRGALASRASSGLLRSADLAARSENQRKENENAKVAPAANDGVVDLAGSNSSQLEECEGRKADVRQKGSLTVVWEHGATLRDSWSIDSSHELGRLAFGALLDYDAVWYLSPADTDCVGVLRYSVVPHPRLAPTGGWISGSGRLRDDPYIIVKAEAAPSIRPSKAAS----RDRGDGRGGSGQRQPNLDPHHHQGRVGVEGLTKSTHGAADGGYTAAAPSRGHAGRSRGTNXXXXXXAERYEPAEESHSDRVSAGPTAEGGRRTQPQTPSRVLPKAVSAGGSFGLATSPSAKALEANDSGDKVTCPVCNRGMDHWKSGQRQQHVHACLMKQPSSAKKTRLAGDATPSASRPSGITHRSSLQFDGSSDPGESTTPRPERRPGVRRTEGTGSSANRQEGPSGPSEGPRSSRVSLQGVFSPKPARDPDGTNTVSASRGTAPXXXXXXXXXXXXXKGLTECPVCGVSFGGRQGQWERQAHVQQCLDSAWEP 1357 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14.2927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14.2927.1 >prot_E-fasciculatus_F_contig14.2927.1 ID=prot_E-fasciculatus_F_contig14.2927.1|Name=mRNA_E-fasciculatus_F_contig14.2927.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1345bp MIDVEEIDDNSSQEATLPPATLASTTKKRTKTKKDSPAVAPSSTLTRFLGback to top mRNA from alignment at E-fasciculatus_F_contig14:11472..18938- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14.2927.1 ID=mRNA_E-fasciculatus_F_contig14.2927.1|Name=mRNA_E-fasciculatus_F_contig14.2927.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7467bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14:11472..18938- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14:11472..18938- >mRNA_E-fasciculatus_F_contig14.2927.1 ID=mRNA_E-fasciculatus_F_contig14.2927.1|Name=mRNA_E-fasciculatus_F_contig14.2927.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=8070bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14:11472..18938- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |