mRNA_E-fasciculatus_F_contig13994.2924.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13994.2924.1
Unique NamemRNA_E-fasciculatus_F_contig13994.2924.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13994.2924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13994contigE-fasciculatus_F_contig13994:484..821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927890.6230297-UTR-E-fasciculatus_F_contig13994:483..5151622927890.6230297-UTR-E-fasciculatus_F_contig13994:483..515Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13994 484..515 +
1695995739.8267667-UTR-E-fasciculatus_F_contig13994:483..5151695995739.8267667-UTR-E-fasciculatus_F_contig13994:483..515Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13994 484..515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927890.6349766-CDS-E-fasciculatus_F_contig13994:515..8211622927890.6349766-CDS-E-fasciculatus_F_contig13994:515..821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13994 516..821 +
1695995739.8346-CDS-E-fasciculatus_F_contig13994:515..8211695995739.8346-CDS-E-fasciculatus_F_contig13994:515..821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13994 516..821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13994.2924.1prot_E-fasciculatus_F_contig13994.2924.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13994 516..821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13994.2924.1

>prot_E-fasciculatus_F_contig13994.2924.1 ID=prot_E-fasciculatus_F_contig13994.2924.1|Name=mRNA_E-fasciculatus_F_contig13994.2924.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
MIHRKGEGVATAEAHNHHKHSHQKLSLSRCTPTKVFGASDHPNLCRSFSL
RGPLPLPTRTLKKACNGLGSPASCFPWNHPLPPLPSHCLCRQHSRPTIEC
RS
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mRNA from alignment at E-fasciculatus_F_contig13994:484..821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13994.2924.1 ID=mRNA_E-fasciculatus_F_contig13994.2924.1|Name=mRNA_E-fasciculatus_F_contig13994.2924.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=338bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13994:484..821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAACTCTCCCGCGCGCTGCGCCTGGACGTGATGATACACCGAAAGGGG
GAAGGGGTGGCAACAGCAGAGGCACACAATCACCACAAGCACTCTCACCA
AAAGCTCTCTCTCTCTCGTTGCACCCCTACAAAAGTTTTTGGTGCGAGTG
ACCACCCGAACCTCTGTCGCTCCTTCTCCCTACGAGGACCTCTCCCTCTC
CCAACGCGCACTCTCAAAAAGGCCTGCAACGGACTCGGGTCACCCGCTTC
TTGCTTCCCGTGGAACCACCCACTTCCTCCCCTCCCCTCCCATTGTTTGT
GTCGTCAACACTCGCGACCGACGATCGAATGTCGAAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13994:484..821+

>mRNA_E-fasciculatus_F_contig13994.2924.1 ID=mRNA_E-fasciculatus_F_contig13994.2924.1|Name=mRNA_E-fasciculatus_F_contig13994.2924.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13994:484..821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATACACCGAAAGGGGGAAGGGGTGGCAACAGCAGAGGCACACAATCA
CCACAAGCACTCTCACCAAAAGCTCTCTCTCTCTCGTTGCACCCCTACAA
AAGTTTTTGGTGCGAGTGACCACCCGAACCTCTGTCGCTCCTTCTCCCTA
CGAGGACCTCTCCCTCTCCCAACGCGCACTCTCAAAAAGGCCTGCAACGG
ACTCGGGTCACCCGCTTCTTGCTTCCCGTGGAACCACCCACTTCCTCCCC
TCCCCTCCCATTGTTTGTGTCGTCAACACTCGCGACCGACGATCGAATGT
CGAAGCATGATACACCGAAAGGGGGAAGGGGTGGCAACAGCAGAGGCACA
CAATCACCACAAGCACTCTCACCAAAAGCTCTCTCTCTCTCGTTGCACCC
CTACAAAAGTTTTTGGTGCGAGTGACCACCCGAACCTCTGTCGCTCCTTC
TCCCTACGAGGACCTCTCCCTCTCCCAACGCGCACTCTCAAAAAGGCCTG
CAACGGACTCGGGTCACCCGCTTCTTGCTTCCCGTGGAACCACCCACTTC
CTCCCCTCCCCTCCCATTGTTTGTGTCGTCAACACTCGCGACCGACGATC
GAATGTCGAAGC
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