mRNA_E-fasciculatus_F_contig13991.2923.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13991.2923.1
Unique NamemRNA_E-fasciculatus_F_contig13991.2923.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13991.2923.1 vs. uniprot
Match: D7FTW8_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW8_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.280e-65
Identity = 125/159 (78.62%), Postives = 131/159 (82.39%), Query Frame = 2 
Query:   23 MEELFAAATGCLDPLVASSYLESAGYDLTRAVNHFLDSPKNDAAVSRGHGDNCGSASCGGDDNGGNRSFTRQRAALAGEKQQQQQLLTFEHARPSLSGTSSSSVTASLGMPSSSGMSEETHAKRCDSILGAPVPKTTAAIVAATTPSAGWEAIAERCQR 499
            MEELFAAATGCL+PLVA+SYLE AGYDLTRAVNHFLDSPKND A SR H D C SASCG DDN   RS  RQRAA+AGEKQQQQ LL FEHARP LS TSSSSVTAS+GMP SSGM+EE HAK CDSI GAPVPK+T      T PSAGWEAIAERCQR
Sbjct:    1 MEELFAAATGCLNPLVAASYLERAGYDLTRAVNHFLDSPKNDTAASRSHSDYCKSASCG-DDNSDPRSLKRQRAAMAGEKQQQQ-LLKFEHARPLLSDTSSSSVTASVGMPFSSGMAEEIHAKPCDSIRGAPVPKST------TAPSAGWEAIAERCQR 151
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BLAST of mRNA_E-fasciculatus_F_contig13991.2923.1 vs. uniprot
Match: A0A6H5JEW6_9PHAE (GRF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW6_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.350e-47
Identity = 99/159 (62.26%), Postives = 104/159 (65.41%), Query Frame = 2 
Query:   23 MEELFAAATGCLDPLVASSYLESAGYDLTRAVNHFLDSPKNDAAVSRGHGDNCGSASCGGDDNGGNRSFTRQRAALAGEKQQQQQLLTFEHARPSLSGTSSSSVTASLGMPSSSGMSEETHAKRCDSILGAPVPKTTAAIVAATTPSAGWEAIAERCQR 499
            MEELFAAATGCLDPLVA+SYLE AGYDLTRAVNHFLDSPKN  A SRG  D C  +                              L FEHAR  LS TSSSSV AS+GMPSSSGM+EE HA  CDS+LGAPVPKTT      T PSAGWEA AERCQR
Sbjct:    1 MEELFAAATGCLDPLVAASYLERAGYDLTRAVNHFLDSPKNGTAASRGSSDYCCRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKFEHARRLLSDTSSSSVPASVGMPSSSGMAEEIHAMPCDSVLGAPVPKTT------TAPSAGWEAFAERCQR 153
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13991.2923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTW8_ECTSI1.280e-6578.62Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6H5JEW6_9PHAE9.350e-4762.26GRF-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13991contigE-fasciculatus_F_contig13991:1461..1971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.9
Seed ortholog evalue2.2e-55
Seed eggNOG ortholog2880.D7FTW8
KEGG koko:K08582
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size489
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927890.583287-UTR-E-fasciculatus_F_contig13991:1460..14821622927890.583287-UTR-E-fasciculatus_F_contig13991:1460..1482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13991 1461..1482 +
1695995739.80852-UTR-E-fasciculatus_F_contig13991:1460..14821695995739.80852-UTR-E-fasciculatus_F_contig13991:1460..1482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13991 1461..1482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927890.5930717-CDS-E-fasciculatus_F_contig13991:1482..19711622927890.5930717-CDS-E-fasciculatus_F_contig13991:1482..1971Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13991 1483..1971 +
1695995739.8187444-CDS-E-fasciculatus_F_contig13991:1482..19711695995739.8187444-CDS-E-fasciculatus_F_contig13991:1482..1971Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13991 1483..1971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13991.2923.1prot_E-fasciculatus_F_contig13991.2923.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13991 1483..1971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13991.2923.1

>prot_E-fasciculatus_F_contig13991.2923.1 ID=prot_E-fasciculatus_F_contig13991.2923.1|Name=mRNA_E-fasciculatus_F_contig13991.2923.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=163bp
MEELFAAATGCLDPLVASSYLESAGYDLTRAVNHFLDSPKNDAAVSRGHG
DNCGSASCGGDDNGGNRSFTRQRAALAGEKQQQQQLLTFEHARPSLSGTS
SSSVTASLGMPSSSGMSEETHAKRCDSILGAPVPKTTAAIVAATTPSAGW
EAIAERCQRWEP*
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mRNA from alignment at E-fasciculatus_F_contig13991:1461..1971+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13991.2923.1 ID=mRNA_E-fasciculatus_F_contig13991.2923.1|Name=mRNA_E-fasciculatus_F_contig13991.2923.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=511bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13991:1461..1971+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCACCTTCTGCAACAACGGGATGGAGGAGCTGTTTGCTGCAGCCACCG
GCTGCTTGGATCCCTTGGTCGCGTCGTCCTACCTTGAGAGCGCCGGTTAC
GATTTGACCAGAGCAGTCAACCACTTCTTGGACTCCCCAAAGAATGATGC
TGCGGTAAGCCGGGGCCATGGTGACAACTGTGGGAGCGCGTCTTGTGGCG
GCGATGACAACGGCGGGAACCGCTCCTTCACACGACAGCGTGCGGCGTTG
GCAGGGGAGAAGCAACAACAACAGCAGCTCTTGACGTTTGAACACGCGAG
ACCTTCGTTGTCGGGTACCAGCAGTAGCAGTGTCACTGCAAGTTTGGGAA
TGCCTTCCTCATCAGGAATGTCGGAGGAAACACATGCGAAGCGATGCGAT
AGCATCCTCGGTGCTCCTGTACCAAAGACGACCGCTGCCATCGTTGCGGC
AACGACGCCTTCCGCAGGGTGGGAAGCCATTGCTGAGCGCTGCCAGAGGT
GGGAACCGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13991:1461..1971+

>mRNA_E-fasciculatus_F_contig13991.2923.1 ID=mRNA_E-fasciculatus_F_contig13991.2923.1|Name=mRNA_E-fasciculatus_F_contig13991.2923.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13991:1461..1971+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGAGCTGTTTGCTGCAGCCACCGGCTGCTTGGATCCCTTGGTCGC
GTCGTCCTACCTTGAGAGCGCCGGTTACGATTTGACCAGAGCAGTCAACC
ACTTCTTGGACTCCCCAAAGAATGATGCTGCGGTAAGCCGGGGCCATGGT
GACAACTGTGGGAGCGCGTCTTGTGGCGGCGATGACAACGGCGGGAACCG
CTCCTTCACACGACAGCGTGCGGCGTTGGCAGGGGAGAAGCAACAACAAC
AGCAGCTCTTGACGTTTGAACACGCGAGACCTTCGTTGTCGGGTACCAGC
AGTAGCAGTGTCACTGCAAGTTTGGGAATGCCTTCCTCATCAGGAATGTC
GGAGGAAACACATGCGAAGCGATGCGATAGCATCCTCGGTGCTCCTGTAC
CAAAGACGACCGCTGCCATCGTTGCGGCAACGACGCCTTCCGCAGGGTGG
GAAGCCATTGCTGAGCGCTGCCAGAGGTGGGAACCGTAGATGGAGGAGCT
GTTTGCTGCAGCCACCGGCTGCTTGGATCCCTTGGTCGCGTCGTCCTACC
TTGAGAGCGCCGGTTACGATTTGACCAGAGCAGTCAACCACTTCTTGGAC
TCCCCAAAGAATGATGCTGCGGTAAGCCGGGGCCATGGTGACAACTGTGG
GAGCGCGTCTTGTGGCGGCGATGACAACGGCGGGAACCGCTCCTTCACAC
GACAGCGTGCGGCGTTGGCAGGGGAGAAGCAACAACAACAGCAGCTCTTG
ACGTTTGAACACGCGAGACCTTCGTTGTCGGGTACCAGCAGTAGCAGTGT
CACTGCAAGTTTGGGAATGCCTTCCTCATCAGGAATGTCGGAGGAAACAC
ATGCGAAGCGATGCGATAGCATCCTCGGTGCTCCTGTACCAAAGACGACC
GCTGCCATCGTTGCGGCAACGACGCCTTCCGCAGGGTGGGAAGCCATTGC
TGAGCGCTGCCAGAGGTGGGAACCGTAG
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