mRNA_E-fasciculatus_F_contig1399.2922.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1399.2922.1 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI) HSP 1 Score: 343 bits (881), Expect = 9.620e-107 Identity = 342/400 (85.50%), Postives = 351/400 (87.75%), Query Frame = 1
Query: 1 RRLDFVRPLVDRIPSDDEEXXXXXXXXXXXXXX-SYREETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPKANXXXXXXXXXXXXXXXXXX---GSEQPEGKKSTSGSSAKEDETDTPEDGKCGTLAAVVSPPSASSDRSARYLRRREGRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRFR--KGKATSARRVGEEGSGXXXXXXXXXXXEGE---EAEAVGWKWENELEEEDEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDEEDERFVVLKREPSHFVLVKTAPSPEDSDGAAXXXXXXXXXXXXXXXXXXXXQACFSRSELPDVVRRLWQL 1173
R LDFVRPLVDRIPSDDE XXXXXXXXXXXXXX SYR ET XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX GS QPEGKK TS +AK D+TD PED +C TLAAVVSPPSASSDR+ARYLRRREGRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KGKATS RRVGEEGSGXXXXXXXXXXX E EAVGW+WENE+EEE+EGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDD EDERFVVLKREPSHFVL++T PSPEDSDGA XXXXXXXXXX QACFSRSELPDVVRRLWQL
Sbjct: 87 RWLDFVRPLVDRIPSDDEXXXXXXXXXXXXXXXXSYRGETEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSGQPEGKKPTSRRTAKADDTDAPEDSECATLAAVVSPPSASSDRNARYLRRREGRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKATSPRRVGEEGSGXXXXXXXXXXXXXXXXXETEAVGWRWENEVEEENEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDGEDERFVVLKREPSHFVLLETVPSPEDSDGAVGSDSGXXXXXXXXXXKGGRGQACFSRSELPDVVRRLWQL 486
BLAST of mRNA_E-fasciculatus_F_contig1399.2922.1 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE) HSP 1 Score: 293 bits (749), Expect = 5.570e-84 Identity = 322/439 (73.35%), Postives = 332/439 (75.63%), Query Frame = 1
Query: 1 RRLDFVRPLVDRIPSDDEEXXXXXXXXXXXXXXSYREETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPKANXXXXXXXXXXXXXXXXXXGSEQPEGKKSTSGSSAKEDETDTPEDGKCGTLAAVVSPPSASSDRSARYLRRREGRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRFRKGKATSARRVGEEGSGXXXXXXXXXXXEG------------------------------------------------EEAEAVGWKWENELEEEDEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDEEDERFVVLKREPSHFVLVKTAPSPEDSDGAAXXXXXXXXXXXXXXXXXXXXQACFSRSELPDVVRRLWQL 1173
R LDFVRPLVDRIPSDDE XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXX GS+QPEGKKSTS SAK D+ D PED C TLAAVVSP S+SSDR+ARYLRRREGRGLS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX E EAVGW+WENE+EE++EGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDEEDERFVVLKREPSHFVL++T PSPEDSDGA XXXXXXXXXXXXX QACFSRSELPDVVRRLWQL
Sbjct: 368 RWLDFVRPLVDRIPSDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGSDQPEGKKSTSRRSAKADDIDAPEDSGCTTLAAVVSPRSSSSDRNARYLRRREGRGLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGRERTEAVGWRWENEVEEQNEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDEEDERFVVLKREPSHFVLLETVPSPEDSDGAVSSXXXXXXXXXXXXXKGGRGQACFSRSELPDVVRRLWQL 806
BLAST of mRNA_E-fasciculatus_F_contig1399.2922.1 vs. uniprot
Match: A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.380e-16 Identity = 58/141 (41.13%), Postives = 75/141 (53.19%), Query Frame = 1
Query: 751 PVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDEEDERFVVLKRE--PSHFVLVKTAPSPEDSDGAAXXXXXXXXXXXXXXXXXXXXQACFSRSELPDVVRRLW 1167
P V+TVE+L+ ++R EGS G G+CMWAD A VV++RL++ ILFVDMER + AWPYR LA + E +VVLKRE HFV + A GAA F+ +LP+ VR LW
Sbjct: 207 PAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAAC-----EGEPAHYVVLKREGPAGHFVYIGAA------SGAA----------------------AFALRDLPNAVRALW 314 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1399.2922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1399.2922.1 >prot_E-fasciculatus_F_contig1399.2922.1 ID=prot_E-fasciculatus_F_contig1399.2922.1|Name=mRNA_E-fasciculatus_F_contig1399.2922.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=392bp RRLDFVRPLVDRIPSDDEEEEGEEEEGEEDGDDSYREETEGEASQSQPQQback to top mRNA from alignment at E-fasciculatus_F_contig1399:14986..17655- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1399.2922.1 ID=mRNA_E-fasciculatus_F_contig1399.2922.1|Name=mRNA_E-fasciculatus_F_contig1399.2922.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2670bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1399:14986..17655- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1399:14986..17655- >mRNA_E-fasciculatus_F_contig1399.2922.1 ID=mRNA_E-fasciculatus_F_contig1399.2922.1|Name=mRNA_E-fasciculatus_F_contig1399.2922.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2352bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1399:14986..17655- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |