prot_E-fasciculatus_F_contig13989.2918.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig13989.2918.1
Unique Nameprot_E-fasciculatus_F_contig13989.2918.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length322
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13989.2918.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 4.220e-107
Identity = 211/231 (91.34%), Postives = 217/231 (93.94%), Query Frame = 0 
Query:   10 QSAGDMIAAERLVLRLEPRSLDLETTLPLLRGHRLHSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAPHPXXXXXXXXXXXXXXXXXXX---LHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAEDTAKARASLLHLLVRPALIQSSSSSIRAAGATAAADAGRRREGGSNKPWGGDRRWQEAFFPYLAVLLYVDAGATIDVLSVAMDSPDATFRREIPAA 237
            QSAGDMIAAERLVLRLEPRSL+LETTLPLLRGHRLHSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAP P XXXXXXXXXXXXXXXXXX   LHPYPADPTFDELGYKVLLYLKRCFRGRVLGA+EPLSA DTAKARASLLHLLVRPAL+QSSSSS+ AAG  AAADAG RR GGS +PWGGDRRWQEA FPYLAVLLYVDAGATIDVLSVAMDSPDATF RE+PAA
Sbjct:  912 QSAGDMIAAERLVLRLEPRSLELETTLPLLRGHRLHSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAPRPPXXXXXXXXXXXXXXXXXXXLLLHPYPADPTFDELGYKVLLYLKRCFRGRVLGASEPLSAADTAKARASLLHLLVRPALMQSSSSSLGAAG-VAAADAGGRRAGGSKRPWGGDRRWQEALFPYLAVLLYVDAGATIDVLSVAMDSPDATFHREVPAA 1141
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13989.2918.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 1.210e-104
Identity = 193/230 (83.91%), Postives = 202/230 (87.83%), Query Frame = 0 
Query:   10 QSAGDMIAAERLVLRLEPRSLDLETTLPLLRGHRLHSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAPHPXXXXXXXXXXXXXXXXXXXLHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAEDTAKARASLLHLLVRPALIQSSSSSIRAAGATAAADA--GRRREGGSNKPWGGDRRWQEAFFPYLAVLLYVDAGATIDVLSVAMDSPDATFRREIPAA 237
            QSAGDMIAAERLVLRLEPRSL+LETTLPLLRGHRL+SALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAP+P                   LHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSA DTAKARASLLHLLVRPAL+QSSSSS+ A+G  AAADA  G RR GGS+KPWGGDRRWQEA FP+LAVLLYVDAGATIDVLSVAMDSPDATFRRE+PAA
Sbjct: 1126 QSAGDMIAAERLVLRLEPRSLELETTLPLLRGHRLYSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAPNPPPCGDGGQGGEGYRQQQL-LHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAVDTAKARASLLHLLVRPALMQSSSSSLGASG-VAAADAATGGRRMGGSSKPWGGDRRWQEAPFPHLAVLLYVDAGATIDVLSVAMDSPDATFRREVPAA 1353
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13989.2918.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRX0_ECTSI4.220e-10791.34Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMF4_9PHAE1.210e-10483.91Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025941Vacuolar protein sorting-associated protein 8, central domainPFAMPF12816Vps8coord: 3..222
e-value: 3.9E-31
score: 108.1
NoneNo IPR availablePANTHERPTHR12616VACUOLAR PROTEIN SORTING VPS41coord: 5..230
NoneNo IPR availablePANTHERPTHR12616:SF8VACUOLAR PROTEIN SORTING 8 HOMOLOG (S. CEREVISIAE)coord: 5..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13989contigE-fasciculatus_F_contig13989:401..3446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13989.2918.1mRNA_E-fasciculatus_F_contig13989.2918.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig13989 401..3447 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig13989.2918.1 ID=prot_E-fasciculatus_F_contig13989.2918.1|Name=mRNA_E-fasciculatus_F_contig13989.2918.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=322bp
VCSLLLLNFQSAGDMIAAERLVLRLEPRSLDLETTLPLLRGHRLHSALLA
VGALTGDHVSSAEEVLREAMSIAERDRLRAPHPPPSGGGGERGEGDRQQQ
QQLHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAEDTAKARASL
LHLLVRPALIQSSSSSIRAAGATAAADAGRRREGGSNKPWGGDRRWQEAF
FPYLAVLLYVDAGATIDVLSVAMDSPDATFRREIPAAAATTATAAAGAAV
ASLSGDGSSSLAVAGPPTLHRESSSSSFAAAPPDGARGGPAGEGEAAGSG
GGGGVGGRRLGRRGRAARAVGW
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025941Vps8_central_dom