mRNA_E-fasciculatus_F_contig13989.2918.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13989.2918.1
Unique NamemRNA_E-fasciculatus_F_contig13989.2918.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13989.2918.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 4.220e-107
Identity = 211/231 (91.34%), Postives = 217/231 (93.94%), Query Frame = 1 
Query:   28 QSAGDMIAAERLVLRLEPRSLDLETTLPLLRGHRLHSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAPHPXXXXXXXXXXXXXXXXXXX---LHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAEDTAKARASLLHLLVRPALIQSSSSSIRAAGATAAADAGRRREGGSNKPWGGDRRWQEAFFPYLAVLLYVDAGATIDVLSVAMDSPDATFRREIPAA 711
            QSAGDMIAAERLVLRLEPRSL+LETTLPLLRGHRLHSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAP P XXXXXXXXXXXXXXXXXX   LHPYPADPTFDELGYKVLLYLKRCFRGRVLGA+EPLSA DTAKARASLLHLLVRPAL+QSSSSS+ AAG  AAADAG RR GGS +PWGGDRRWQEA FPYLAVLLYVDAGATIDVLSVAMDSPDATF RE+PAA
Sbjct:  912 QSAGDMIAAERLVLRLEPRSLELETTLPLLRGHRLHSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAPRPPXXXXXXXXXXXXXXXXXXXLLLHPYPADPTFDELGYKVLLYLKRCFRGRVLGASEPLSAADTAKARASLLHLLVRPALMQSSSSSLGAAG-VAAADAGGRRAGGSKRPWGGDRRWQEALFPYLAVLLYVDAGATIDVLSVAMDSPDATFHREVPAA 1141
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BLAST of mRNA_E-fasciculatus_F_contig13989.2918.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 1.210e-104
Identity = 193/230 (83.91%), Postives = 202/230 (87.83%), Query Frame = 1 
Query:   28 QSAGDMIAAERLVLRLEPRSLDLETTLPLLRGHRLHSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAPHPXXXXXXXXXXXXXXXXXXXLHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAEDTAKARASLLHLLVRPALIQSSSSSIRAAGATAAADA--GRRREGGSNKPWGGDRRWQEAFFPYLAVLLYVDAGATIDVLSVAMDSPDATFRREIPAA 711
            QSAGDMIAAERLVLRLEPRSL+LETTLPLLRGHRL+SALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAP+P                   LHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSA DTAKARASLLHLLVRPAL+QSSSSS+ A+G  AAADA  G RR GGS+KPWGGDRRWQEA FP+LAVLLYVDAGATIDVLSVAMDSPDATFRRE+PAA
Sbjct: 1126 QSAGDMIAAERLVLRLEPRSLELETTLPLLRGHRLYSALLAVGALTGDHVSSAEEVLREAMSIAERDRLRAPNPPPCGDGGQGGEGYRQQQL-LHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAVDTAKARASLLHLLVRPALMQSSSSSLGASG-VAAADAATGGRRMGGSSKPWGGDRRWQEAPFPHLAVLLYVDAGATIDVLSVAMDSPDATFRREVPAA 1353
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13989.2918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRX0_ECTSI4.220e-10791.34Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMF4_9PHAE1.210e-10483.91Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13989contigE-fasciculatus_F_contig13989:401..3447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue1.2e-95
Seed eggNOG ortholog2880.D8LRX0
KEGG koko:K20178
KEGG Pathwayko04138,map04138
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-08_002740.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size967
Cds size966
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13989.2918.1prot_E-fasciculatus_F_contig13989.2918.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13989 401..3446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927888.6418006-CDS-E-fasciculatus_F_contig13989:400..5921622927888.6418006-CDS-E-fasciculatus_F_contig13989:400..592Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13989 401..592 +
1695995739.6071289-CDS-E-fasciculatus_F_contig13989:400..5921695995739.6071289-CDS-E-fasciculatus_F_contig13989:400..592Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13989 401..592 +
1622927888.6573489-CDS-E-fasciculatus_F_contig13989:1130..13731622927888.6573489-CDS-E-fasciculatus_F_contig13989:1130..1373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13989 1131..1373 +
1695995739.6195753-CDS-E-fasciculatus_F_contig13989:1130..13731695995739.6195753-CDS-E-fasciculatus_F_contig13989:1130..1373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13989 1131..1373 +
1622927888.6820276-CDS-E-fasciculatus_F_contig13989:2192..22921622927888.6820276-CDS-E-fasciculatus_F_contig13989:2192..2292Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13989 2193..2292 +
1695995739.6286104-CDS-E-fasciculatus_F_contig13989:2192..22921695995739.6286104-CDS-E-fasciculatus_F_contig13989:2192..2292Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13989 2193..2292 +
1622927888.8477864-CDS-E-fasciculatus_F_contig13989:3015..34461622927888.8477864-CDS-E-fasciculatus_F_contig13989:3015..3446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13989 3016..3446 +
1695995739.637713-CDS-E-fasciculatus_F_contig13989:3015..34461695995739.637713-CDS-E-fasciculatus_F_contig13989:3015..3446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13989 3016..3446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13989.2918.1

>prot_E-fasciculatus_F_contig13989.2918.1 ID=prot_E-fasciculatus_F_contig13989.2918.1|Name=mRNA_E-fasciculatus_F_contig13989.2918.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=322bp
VCSLLLLNFQSAGDMIAAERLVLRLEPRSLDLETTLPLLRGHRLHSALLA
VGALTGDHVSSAEEVLREAMSIAERDRLRAPHPPPSGGGGERGEGDRQQQ
QQLHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAEDTAKARASL
LHLLVRPALIQSSSSSIRAAGATAAADAGRRREGGSNKPWGGDRRWQEAF
FPYLAVLLYVDAGATIDVLSVAMDSPDATFRREIPAAAATTATAAAGAAV
ASLSGDGSSSLAVAGPPTLHRESSSSSFAAAPPDGARGGPAGEGEAAGSG
GGGGVGGRRLGRRGRAARAVGW
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mRNA from alignment at E-fasciculatus_F_contig13989:401..3447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13989.2918.1 ID=mRNA_E-fasciculatus_F_contig13989.2918.1|Name=mRNA_E-fasciculatus_F_contig13989.2918.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3047bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13989:401..3447+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGCTCGTTGTTGTTGTTAAATTTTCAGAGTGCCGGCGACATGATCGC
CGCGGAGCGGCTCGTGCTACGGCTGGAGCCCCGGTCCCTGGACCTGGAGA
CCACCCTCCCTCTCCTCCGGGGGCACCGTCTTCACTCCGCCCTCCTCGCG
GTGGGGGCGCTGACAGGCGACCATGTGTCTTCCGCGGAGGAGGTGTGGGT
TCTCACTATTTAGAGAGTAAACTAAACCTATTTAGATACTTCGTATTTCT
AGAATAATAATAGCGACAATTTCCTTTTTTTTTTGTATCTAACACGGCGG
TGCTATGATACAAACGTCAACGTTGTTTTTTTTTTTGTTCACCTGCAGGC
TGCTGCTAACCGGCAGAAGTGCTGGGAGTATCAGTTTAATGTGATGACAG
AAAAAAAAACTGAAGAAAGATTCCGACATATGTTTGCGTTTTTGGTCTTT
GTCGCCTGCCAACTCATGACTCGTGGCACTGAAGGGGACGAGTTCCTTCC
CGGAAACGGAACAGTTCATTTGCGGAGCGATAGATAACAGTTCGCCGCGA
TCTCCAGGTGTTTCGTGTGCTGTCGTCACGTTCGTTGACACGACTTTCCG
TTTGCACGAAGAACGTCACGTGCTCATTGCGCTGAGGTTGTTTGGACTGC
CTTCTCGTACACGGGTTATACGCCTGGACTCCTGTTGACTCCCCCCACGC
CCCCCCCCCCCCCCCCCCCGGCCAAAACAGGTGCTGCGAGAAGCAATGTC
TATCGCCGAGCGAGATCGACTCCGCGCTCCCCATCCCCCGCCTTCTGGTG
GGGGCGGCGAGAGAGGAGAAGGAGACCGGCAGCAGCAGCAGCAGCTGCAC
CCGTACCCGGCGGACCCGACCTTCGACGAGCTCGGGTACAAGGTGCTCCT
GTACCTCAAGCGCTGCTTCCGCGGGCGCGTGCTGGGTGCCGCGGAACCCC
TCTCGGCGGAGGATACCGCTAAGGTAGGTGGTGGTGGTGGTGGTGGTGGT
GGTGGTGTACATACGCGTTGCTATAGGTAAGTAAGTGTTGGTGGCGGCGG
TGTGCACACAGTCATCTCTCGAAACGGGGTGTTCTTTCGCCGGAAAATCA
AGCGCGCACGTGTGTGTTTGGACTTGTCATTTTTGCCGGCGGTTTATGGT
CTCGGAAGGGGGGAAGCACGTGACACGTTGTTTGTCCGCAGGCCTATTTA
GCTCCTCAGTATACTACGTGTTTGGAGGCATGCGCAGTGTGTTGGTGGAG
TGGCTACGCAGAATGGAACAAGAACCAAAACACCCGGTCTGTTCATTCCA
ACTTCTGGTGGAGGGCAAGGGCGGAGTGCTACCTGGTCTTTCTATTGTAC
ACGACCTCGTACCGACCACACTCGCTGCCAGCAGCGGGCTGGCTCTTGGT
GACCTTCGATTTGAGTTAGTTCGGAGGCGAAGTCTCGCTTAACACGGCAG
TCTAGCTCTCCTTCCACTCTCTCGTAGCACGCGTGTTGTATGTGGTCTGC
ATCAACGGCGCGCGCTTGGATTGAAACATGTCGTCGTCGTCGTACCTTTT
TATTTATTTGTATTTGGCTGGCGCTGTTTGTACGTACGATGATTTGTATT
TTGGCATGAGGTCTCTCTTGTCACAGGGCGTTCCAGAGGAAGCGACAGCG
ATTGCAGGAGATTTGTCGGCACGTTTTTTTTTTGTGAGGATACGTTGGAG
TCCTAAGTACCTCATGATTCGCCTCGCTTTGTCGACGACACCCAGAGTAT
TTTCGGTCTGTCTGTTCTCTCTCTTCTTTTTTTTTTTTTCAGGCGCGGGC
AAGCCTTCTCCATCTCCTCGTGCGACCAGCCCTCATACAGTCGTCGTCTT
CATCTATTCGTGCTGCCGGAGCTACTGCTGCTGCTGATGCTGGTAAGTTT
TCTTTTCGCCGGGCACTGCTTCCCGTCGTGGGTGACAATCTGGGTTTGTT
GAAAACCACCATGGGGGGTTGTAGGCGCCGACTGCAGTTCGTTGAGGATT
GCTACAAGGCAAAGCGGAGCTTAATCCCTTTGCACGTAGGCATGGGCATT
GATGTGGTGGTGTGATGATTGCGATGATGCCTTTTCGTGCTCCAAATTTG
CTACCCGTGTTCGATGCTTTGTTGGTGGCATATTTTTTAAGTCTCCTGGT
GTGGCGACTAGGGCCCCATATGTACATAGATCGAATGGATTCAAATGCTG
TCCAATCATTCGTACTACCGCTGCCCCTCCCTGCTATCTGGGTGCAACCA
CCCACCGTTTCGGACATTCGATGGTCGTGAAAGCCACTGCTGTTGTTGTC
GCTGCGTTTAGACGTGCTCTTCGTTCCACAAGGTCCGAGATCTGTTCAAG
ACGGCAACGCGTCGAATGCATGCTGTGGATTTTGGTTTGGCTCCACGAAA
TGTTATCAATTGTTCTTTTATGGTTTCTTCTCGGTCTGTGTTCAGTCATG
CGGTGGATTACATTTGGCTAAAACGAATGTTGACACTTGTTCGTTTTGTG
TTTATATCTTCTGTGTGCGTTCATTTGCGCCGCCCGTTCTCTACCCGCTA
CGTATCTTGCAAAATGAACTTGGTATTGTGGTTGTGGGTGCGATCCTTCA
CGGCAGCAGCAACAGGTCGGCGGCGCGAGGGAGGCAGCAACAAGCCTTGG
GGAGGCGACCGGCGGTGGCAAGAAGCGTTTTTCCCGTACCTCGCGGTCCT
CCTCTACGTGGACGCGGGCGCGACGATCGACGTCCTCTCCGTCGCGATGG
ACTCCCCGGACGCCACGTTCCGCCGAGAAATACCCGCCGCTGCCGCAACA
ACGGCAACGGCCGCAGCAGGGGCAGCGGTGGCTTCCCTGTCAGGGGACGG
GAGCAGCAGTCTTGCCGTCGCGGGGCCGCCGACCCTTCACCGGGAATCGT
CGTCGTCGTCGTTTGCGGCTGCTCCTCCCGATGGGGCGCGAGGGGGCCCC
GCAGGGGAGGGAGAGGCCGCGGGGAGCGGGGGGGGGGGGGGCGTCGGGGG
TAGAAGGCTCGGGAGGAGGGGCCGAGCAGCGAGGGCGGTGGGGTGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13989:401..3447+

>mRNA_E-fasciculatus_F_contig13989.2918.1 ID=mRNA_E-fasciculatus_F_contig13989.2918.1|Name=mRNA_E-fasciculatus_F_contig13989.2918.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1932bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13989:401..3447+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGCTCGTTGTTGTTGTTAAATTTTCAGAGTGCCGGCGACATGATCGC
CGCGGAGCGGCTCGTGCTACGGCTGGAGCCCCGGTCCCTGGACCTGGAGA
CCACCCTCCCTCTCCTCCGGGGGCACCGTCTTCACTCCGCCCTCCTCGCG
GTGGGGGCGCTGACAGGCGACCATGTGTCTTCCGCGGAGGAGGTGTGCTC
GTTGTTGTTGTTAAATTTTCAGAGTGCCGGCGACATGATCGCCGCGGAGC
GGCTCGTGCTACGGCTGGAGCCCCGGTCCCTGGACCTGGAGACCACCCTC
CCTCTCCTCCGGGGGCACCGTCTTCACTCCGCCCTCCTCGCGGTGGGGGC
GCTGACAGGCGACCATGTGTCTTCCGCGGAGGAGGTGCTGCGAGAAGCAA
TGTCTATCGCCGAGCGAGATCGACTCCGCGCTCCCCATCCCCCGCCTTCT
GGTGGGGGCGGCGAGAGAGGAGAAGGAGACCGGCAGCAGCAGCAGCAGCT
GCACCCGTACCCGGCGGACCCGACCTTCGACGAGCTCGGGTACAAGGTGC
TCCTGTACCTCAAGCGCTGCTTCCGCGGGCGCGTGCTGGGTGCCGCGGAA
CCCCTCTCGGCGGAGGATACCGCTAAGGTGCTGCGAGAAGCAATGTCTAT
CGCCGAGCGAGATCGACTCCGCGCTCCCCATCCCCCGCCTTCTGGTGGGG
GCGGCGAGAGAGGAGAAGGAGACCGGCAGCAGCAGCAGCAGCTGCACCCG
TACCCGGCGGACCCGACCTTCGACGAGCTCGGGTACAAGGTGCTCCTGTA
CCTCAAGCGCTGCTTCCGCGGGCGCGTGCTGGGTGCCGCGGAACCCCTCT
CGGCGGAGGATACCGCTAAGGCGCGGGCAAGCCTTCTCCATCTCCTCGTG
CGACCAGCCCTCATACAGTCGTCGTCTTCATCTATTCGTGCTGCCGGAGC
TACTGCTGCTGCTGATGCTGGCGCGGGCAAGCCTTCTCCATCTCCTCGTG
CGACCAGCCCTCATACAGTCGTCGTCTTCATCTATTCGTGCTGCCGGAGC
TACTGCTGCTGCTGATGCTGGTCGGCGGCGCGAGGGAGGCAGCAACAAGC
CTTGGGGAGGCGACCGGCGGTGGCAAGAAGCGTTTTTCCCGTACCTCGCG
GTCCTCCTCTACGTGGACGCGGGCGCGACGATCGACGTCCTCTCCGTCGC
GATGGACTCCCCGGACGCCACGTTCCGCCGAGAAATACCCGCCGCTGCCG
CAACAACGGCAACGGCCGCAGCAGGGGCAGCGGTGGCTTCCCTGTCAGGG
GACGGGAGCAGCAGTCTTGCCGTCGCGGGGCCGCCGACCCTTCACCGGGA
ATCGTCGTCGTCGTCGTTTGCGGCTGCTCCTCCCGATGGGGCGCGAGGGG
GCCCCGCAGGGGAGGGAGAGGCCGCGGGGAGCGGGGGGGGGGGGGGCGTC
GGGGGTAGAAGGCTCGGGAGGAGGGGCCGAGCAGCGAGGGCGGTGGGGTG
GGTCGGCGGCGCGAGGGAGGCAGCAACAAGCCTTGGGGAGGCGACCGGCG
GTGGCAAGAAGCGTTTTTCCCGTACCTCGCGGTCCTCCTCTACGTGGACG
CGGGCGCGACGATCGACGTCCTCTCCGTCGCGATGGACTCCCCGGACGCC
ACGTTCCGCCGAGAAATACCCGCCGCTGCCGCAACAACGGCAACGGCCGC
AGCAGGGGCAGCGGTGGCTTCCCTGTCAGGGGACGGGAGCAGCAGTCTTG
CCGTCGCGGGGCCGCCGACCCTTCACCGGGAATCGTCGTCGTCGTCGTTT
GCGGCTGCTCCTCCCGATGGGGCGCGAGGGGGCCCCGCAGGGGAGGGAGA
GGCCGCGGGGAGCGGGGGGGGGGGGGGCGTCGGGGGTAGAAGGCTCGGGA
GGAGGGGCCGAGCAGCGAGGGCGGTGGGGTGG
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