mRNA_E-fasciculatus_F_contig13986.2917.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13986.2917.1
Unique NamemRNA_E-fasciculatus_F_contig13986.2917.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13986.2917.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 1.740e-79
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = 1 
Query:    7 LSPTFIGPGGAHGAGAGMQGTAIETQQYELQMRMVEILMESLQYTRALRLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEALATYGQMGRTSSDQASHRRTASGGGNEYRLNSTVLAANSTPMPGGGLAW 447
            LSPTFIGPGGAHGAGAGMQGTAIETQQYELQMRMVEILMESLQYTRALRLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEALATYGQMGRTSSDQASHRRTASGGGNEYRL+S+VLAAN TPMPGGGLAW
Sbjct: 1765 LSPTFIGPGGAHGAGAGMQGTAIETQQYELQMRMVEILMESLQYTRALRLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEALATYGQMGRTSSDQASHRRTASGGGNEYRLHSSVLAANVTPMPGGGLAW 1911
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BLAST of mRNA_E-fasciculatus_F_contig13986.2917.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.520e-57
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    7 LSPTFIGPGGAHGAGAGMQGTAIETQQYELQMRMVEILMESLQYTRALRLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEALATYGQMGRTSSDQASHRRTASGGGNEYRLNSTVLAAN 414
            LSPTFIGPGGAHGAGAGMQGTAIETQQYELQMRMVEILMESLQYTRALRLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEALATYGQMGRTSSDQ      A  GG++Y      +  N
Sbjct: 2214 LSPTFIGPGGAHGAGAGMQGTAIETQQYELQMRMVEILMESLQYTRALRLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEALATYGQMGRTSSDQEGGL--AGLGGDKYVYEMVAMVKN 2347
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BLAST of mRNA_E-fasciculatus_F_contig13986.2917.1 vs. uniprot
Match: A0A836CI77_9STRA (DENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI77_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.020e-15
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:   43 GAGAGMQGTAIETQQYELQMRMVEILMESLQYTRALRLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEALATYGQMGRTS 333
            G  A      ++TQQYE+QM++ E+L  SLQ+ +A+RLL+ LLR ++ + QRS + + +A CYLK R++ A E +LERV LEADEAL  +  +G TS
Sbjct: 1282 GGSAAGPSAVMDTQQYEVQMKLAEVLSTSLQFGKAVRLLHRLLRSRLVASQRSAIYMRLAHCYLKTRRLTAAEISLERVQLEADEALEVFASLGITS 1378
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13986.2917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJE7_9PHAE1.740e-7997.96DENN domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FYV2_ECTSI1.520e-5786.03PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A836CI77_9STRA2.020e-1547.42DENN domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13986contigE-fasciculatus_F_contig13986:11..1933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size448
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13986.2917.1prot_E-fasciculatus_F_contig13986.2917.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13986 11..1933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927888.5459073-CDS-E-fasciculatus_F_contig13986:10..1621622927888.5459073-CDS-E-fasciculatus_F_contig13986:10..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13986 11..162 +
1695995739.5670261-CDS-E-fasciculatus_F_contig13986:10..1621695995739.5670261-CDS-E-fasciculatus_F_contig13986:10..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13986 11..162 +
1622927888.570942-CDS-E-fasciculatus_F_contig13986:620..7051622927888.570942-CDS-E-fasciculatus_F_contig13986:620..705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13986 621..705 +
1695995739.5753536-CDS-E-fasciculatus_F_contig13986:620..7051695995739.5753536-CDS-E-fasciculatus_F_contig13986:620..705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13986 621..705 +
1622927888.5842462-CDS-E-fasciculatus_F_contig13986:1333..14381622927888.5842462-CDS-E-fasciculatus_F_contig13986:1333..1438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13986 1334..1438 +
1695995739.5836167-CDS-E-fasciculatus_F_contig13986:1333..14381695995739.5836167-CDS-E-fasciculatus_F_contig13986:1333..1438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13986 1334..1438 +
1622927888.5970693-CDS-E-fasciculatus_F_contig13986:1828..19331622927888.5970693-CDS-E-fasciculatus_F_contig13986:1828..1933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13986 1829..1933 +
1695995739.595959-CDS-E-fasciculatus_F_contig13986:1828..19331695995739.595959-CDS-E-fasciculatus_F_contig13986:1828..1933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13986 1829..1933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13986.2917.1

>prot_E-fasciculatus_F_contig13986.2917.1 ID=prot_E-fasciculatus_F_contig13986.2917.1|Name=mRNA_E-fasciculatus_F_contig13986.2917.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=149bp
GGLSPTFIGPGGAHGAGAGMQGTAIETQQYELQMRMVEILMESLQYTRAL
RLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEA
LATYGQMGRTSSDQASHRRTASGGGNEYRLNSTVLAANSTPMPGGGLAW
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mRNA from alignment at E-fasciculatus_F_contig13986:11..1933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13986.2917.1 ID=mRNA_E-fasciculatus_F_contig13986.2917.1|Name=mRNA_E-fasciculatus_F_contig13986.2917.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1923bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13986:11..1933+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGTTTGTCGCCGACGTTCATTGGGCCTGGCGGCGCGCACGGCGCGGG
GGCGGGGATGCAGGGCACGGCTATCGAGACGCAGCAGTACGAGCTTCAGA
TGAGGATGGTGGAGATTCTTATGGAATCCCTCCAGTACACGAGGGCCCTC
AGGTGGGGTCATGTTCTTGGCGATGAAATGGAGCGTGAGCAGTGAAAAAG
ATTCGCGTGGCATTGGAAGTTTCTTTTTTTTTAAGTGGCTCTCCGAGCGG
GTACACAAGTGTGTGAGAACGAAGGCCGAGGTACGACAAGCGTGCCACAT
GAGCGGTCAAGATCTCTGTCCGGCCGCCAAAACTGCCACGCTTCTTTGAC
CGAGACAAGGTCGAATCGAGCTTTTTGGTGCCATCTATAATATACCAATA
CGTGGTACATGTACAGTACAGCAAGTCGAGTGACCTCACCTTATGCATGT
GCGGCGCGTGTGGACGTTTGTGGAGCCTCCTTTTTTGTTCGGGCGGGTAC
GGCGCGCGTGTCCGTCCTCGACCTTCGGTAATTGCGCGCTGTATGTTCTA
ATCGGTAAGCTCTACTATATCTCTCTCTCGCGCGCGGGATTCTCGGCCGG
GCTGGTGCAGGCTTCTCAACAACCTCCTGAGAAGGAAGATTAAGTCCGGG
CAGCGCTCCCTCGTCCTCGTCCTGGTCGCAAGATGCTACCTCAAGGTATG
TTATTCTACGATGGTGGGTCGTTTCGTGTATTTTGGTGGTGGTTCGGTTT
TGGTAATTCTCTTCAATGGGTGGGAGTGCCGCTCGTTTTGATACACGTCC
TGGGAGGACGGAGTATCTTGATCGATCTCGTGTGAATGCAGACGGAAGTC
TCGCATTGCTGCTGCTGCCGCTGCTGTTGTTGTTGCTGGCATCGTCTTGT
GGCTGTTTGTTGCTGGCGTCAACGACTTGTATCACCTGCGCGAGGCTGCT
GCACGATGCCGGTCCGCCTGCAGTCGACAGTATCAATCATCAATCATTCA
TCCTCCCGTTCTGATGTTTTTTTTGTCGGTGTTGCCGCGGAAGATGTGTT
CATGTAGTCTGTGTTAACACGGAAGCCTCTTCGCGGCAGTGTCATTCGTT
GGGTACGACCTTTTCCGTCCTTGTCGATGCGCGTGTTTCCATAATTTTCG
GGGTCAGTGGTTGCTGAGAACGCCCACCGCTCTCCTCTCCCTCAAGCTCT
TCCACTTTCCCTCTCGTTTTCTCTGCCTCTCTTGGATTGGAGATCCGCTC
GGCTATCTCGCCTTGACCCTTTCTCGCTTTCCCCTTCCAACTGCTCTGTT
CGTTGTATTCGTCCGGTCGATAGCTGCGCAAGGTCGCGGCCTGCGAGGCC
GCTCTGGAGAGGGTTGTGCTGGAGGCTGACGAGGCGCTCGCGACTTACGG
CCAAATGGGCCGAACAAGTTCGGACCAGGTAAACACCTGATACGCGTGCG
TAGCGCCATCGAAACGGTACTTGTTTGTTTGGCAGGTCCAAGGTTTCGAG
CCACCCCGCTGTCGCGGGACTCTCGAGTCATGGAGTTGCTTGGGAGTTGC
TTGAAAGTGGTAGCCGCTCTTTGCTGGTGTTTAGTACATGAATCTGGTGG
TCCCTTGTGAATGTGGGCTGGCAACCTGTTGATTGAGTGTGGCGTCTGGA
GCGTTGTTTTTCTGGCTGGTGGTGGTGCGGTGGGTGTCGAGTGCCGCCGC
CTTGTTTGTGTCCAACTTCCTGGCGTGCCATGGGCGCCTCGTTTCCTCAC
GCGTCGCCCCGCCCCCCCCGCCCCCGCCCCCCGTCTTTTATTGCCTCTCT
TCGTTTGTATGTTTCCAGGCCAGCCACAGGCGCACGGCCTCGGGGGGGGG
CAACGAGTACCGCCTCAACAGCACGGTCCTCGCCGCCAACTCCACCCCCA
TGCCGGGAGGGGGGCTCGCGTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13986:11..1933+

>mRNA_E-fasciculatus_F_contig13986.2917.1 ID=mRNA_E-fasciculatus_F_contig13986.2917.1|Name=mRNA_E-fasciculatus_F_contig13986.2917.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13986:11..1933+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGTTTGTCGCCGACGTTCATTGGGCCTGGCGGCGCGCACGGCGCGGG
GGCGGGGATGCAGGGCACGGCTATCGAGACGCAGCAGTACGAGCTTCAGA
TGAGGATGGTGGAGATTCTTATGGAATCCCTCCAGTACACGAGGGCCCTC
AGGGAGGTTTGTCGCCGACGTTCATTGGGCCTGGCGGCGCGCACGGCGCG
GGGGCGGGGATGCAGGGCACGGCTATCGAGACGCAGCAGTACGAGCTTCA
GATGAGGATGGTGGAGATTCTTATGGAATCCCTCCAGTACACGAGGGCCC
TCAGGCTTCTCAACAACCTCCTGAGAAGGAAGATTAAGTCCGGGCAGCGC
TCCCTCGTCCTCGTCCTGGTCGCAAGATGCTACCTCAAGGCTTCTCAACA
ACCTCCTGAGAAGGAAGATTAAGTCCGGGCAGCGCTCCCTCGTCCTCGTC
CTGGTCGCAAGATGCTACCTCAAGCTGCGCAAGGTCGCGGCCTGCGAGGC
CGCTCTGGAGAGGGTTGTGCTGGAGGCTGACGAGGCGCTCGCGACTTACG
GCCAAATGGGCCGAACAAGTTCGGACCAGCTGCGCAAGGTCGCGGCCTGC
GAGGCCGCTCTGGAGAGGGTTGTGCTGGAGGCTGACGAGGCGCTCGCGAC
TTACGGCCAAATGGGCCGAACAAGTTCGGACCAGGCCAGCCACAGGCGCA
CGGCCTCGGGGGGGGGCAACGAGTACCGCCTCAACAGCACGGTCCTCGCC
GCCAACTCCACCCCCATGCCGGGAGGGGGGCTCGCGTGGGCCAGCCACAG
GCGCACGGCCTCGGGGGGGGGCAACGAGTACCGCCTCAACAGCACGGTCC
TCGCCGCCAACTCCACCCCCATGCCGGGAGGGGGGCTCGCGTGG
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