mRNA_E-fasciculatus_F_contig13983.2916.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE) HSP 1 Score: 317 bits (812), Expect = 1.100e-104 Identity = 147/158 (93.04%), Postives = 156/158 (98.73%), Query Frame = 1
Query: 1 YWLLTSDVYIYDGVKLELHAESGTTGVRLQSDSKVIELRAYGGWLSLLNTELSSWDLDEADYATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDIINSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHNYFGM 474
YWL TSDVYIYDGVKLELHAESGTTG+RL+SDSKVIELRA+GGWLSLLNTELSSWD+DEADYA+NYSAPRSYVTAISEVLD+PPQTC+GHAKNDAGEARFDIINSEVHHLG++GTEAYGITWKVRGFCVDLSN DLFDRVNVRGDIRFSDIHHNYFGM
Sbjct: 103 YWLFTSDVYIYDGVKLELHAESGTTGMRLKSDSKVIELRAHGGWLSLLNTELSSWDVDEADYASNYSAPRSYVTAISEVLDSPPQTCVGHAKNDAGEARFDIINSEVHHLGHYGTEAYGITWKVRGFCVDLSNEDLFDRVNVRGDIRFSDIHHNYFGM 260
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI) HSP 1 Score: 261 bits (666), Expect = 5.090e-84 Identity = 127/163 (77.91%), Postives = 138/163 (84.66%), Query Frame = 1
Query: 1 YWLLTSDVYIYDGVKLELHAESGTTGVRLQSDSKVIELRAYGGWLSLLNTELSSWDLDEADYATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDI-----INSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHNYFGM 474
YWL TSDVYIYDGVKLELHAESGTTG+RL+SDSKVIELRA+GGWLSLLNTELSSWD+DEADYA+NYSAPRSYVTAISEVL+ PPQTC+GHAKNDAGEARFD H + + Y +VRGFCVDLSN DLFDRVNVRG+IRFSDIHHNYFGM
Sbjct: 27 YWLFTSDVYIYDGVKLELHAESGTTGMRLKSDSKVIELRAHGGWLSLLNTELSSWDVDEADYASNYSAPRSYVTAISEVLETPPQTCVGHAKNDAGEARFDSDVEPRAAPSAQHTRFFSLQTYA-RQQVRGFCVDLSNEDLFDRVNVRGNIRFSDIHHNYFGM 188
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI) HSP 1 Score: 172 bits (436), Expect = 1.760e-48 Identity = 84/161 (52.17%), Postives = 115/161 (71.43%), Query Frame = 1
Query: 4 WLLTSDVYIYDGVKLELHAESGTTGVRLQSDS-KVIELRAYGGWLSLLNTELSSWDLDEADY---ATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDIINSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHNYFGM 474
WLLT +Y+ G L LH + G T +R+ S S + L +GG++S+LNT+++SW + + A + S PRSY++A+SE + +P TC G A +DAGEAR DIINS+V +LGY E+YG+T+KVRG+C D SN ++FDRVNVRGDIRFSDIHHN+FG
Sbjct: 97 WLLTKHLYMRPGTTLLLHDDLGCTELRIASSSTNALHLNTFGGYISILNTKVTSWSVSNKEPDAGAYDGSNPRSYMSAVSE-MTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 256
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 171 bits (432), Expect = 4.080e-48 Identity = 86/161 (53.42%), Postives = 111/161 (68.94%), Query Frame = 1
Query: 4 WLLTSDVYIYDGVKLELHAESG---TTGVRLQSDSKV-IELRAYGGWLSLLNTELSSWDLDEADYATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDIINSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHNYFGM 474
WLLT ++Y+ DG+ L++H S +RL S S I LRAYGG L L+T++ +WD + + S RSY++A+SEV+ + QTC G AKN+ GEAR DI NSE+ +LGYHGTE YG+TWKVRGFCVD N +LFD VNV G+I SDIHHN FG+
Sbjct: 74 WLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGV 234
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 164 bits (415), Expect = 2.020e-45 Identity = 81/161 (50.31%), Postives = 112/161 (69.57%), Query Frame = 1
Query: 4 WLLTSDVYIYDGVKLELHAESG---TTGVRLQSDSK-VIELRAYGGWLSLLNTELSSWDLDEADYATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDIINSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHNYFGM 474
WLLT +Y+ DG+ L++H +S +RL S SK I LRA+GG L ++T++ +WD + T+ S RSY++A+SEV+ + Q C G AK + GEAR DI +SE+ +LGY G+E+YG+TWKVRG C DLSN ++FD VNV G+I SDIHHNYFG+
Sbjct: 100 WLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGV 260
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.020e-45 Identity = 83/161 (51.55%), Postives = 111/161 (68.94%), Query Frame = 1
Query: 4 WLLTSDVYIYDGVKLELHAESG---TTGVRLQSDSKV-IELRAYGGWLSLLNTELSSWDLDEADYATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDIINSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHNYFGM 474
WLLT ++++ DG+ L++H S +RL S S I LRA+GG L L+T++ +WD + RSYV+A+SEV+ + QTC G AKN+ GEAR DI +SE+ +LGYHG+E+YG+TWKVRGFCVD SN DLF+ VNV G+I SDIHHN FG+
Sbjct: 100 WLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGV 260
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 163 bits (412), Expect = 5.810e-45 Identity = 79/161 (49.07%), Postives = 111/161 (68.94%), Query Frame = 1
Query: 4 WLLTSDVYIYDGVKLELHAESG---TTGVRLQSDSK-VIELRAYGGWLSLLNTELSSWDLDEADYATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDIINSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHNYFGM 474
WLLT D+Y+ DG+ L++H S +RL S SK I LRA+GG L ++T++ +WD + T+ S RSY++A+SE++ + + C G AK GEAR DI +SE+ +LGY G+E+YG+TWKVRGFC D SN ++FD VNV G+I SDIHHN+FG+
Sbjct: 103 WLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDGSKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGV 263
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI) HSP 1 Score: 163 bits (413), Expect = 5.060e-44 Identity = 81/160 (50.62%), Postives = 111/160 (69.38%), Query Frame = 1
Query: 4 WLLTSDVYIYDGVKLELHAES---GTTGVRLQSDSKV-IELRAYGGWLSLLNTELSSWDLDEADYATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDIINSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHNYFG 471
WLLT ++Y+ DGV L++H +RL SD I LRA+GG S L T++ SW+ + TN+ RSY++A+SEV+ +P QTC G AK++ GEAR D+I+SE+ LGY+ +E+YG+TWKVRGFC+D SN D+FD VNV GD+ S+IH NYFG
Sbjct: 411 WLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSWNEGKGTVDTNHEDGRSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCIDKSNLDVFDFVNVYGDMINSNIHDNYFG 570
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: A0A6H5KSU6_9PHAE (MEP3 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU6_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.710e-43 Identity = 79/157 (50.32%), Postives = 110/157 (70.06%), Query Frame = 1
Query: 4 WLLTSDVYIYDGVKLELHAES---GTTGVRLQS-DSKVIELRAYGGWLSLLNTELSSWDLDEADYATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDIINSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHN 462
WLLT ++Y+ DGV L++H +RL S ++ I LRA+GG S L T++ SW+ + TN+ RSY++A+SEV+ +P QTC G AK++ GEAR D+I+SE+ LGY+ +E+YG+TWKVRGFCVD SN D+FD VNV GD+ S+IHHN
Sbjct: 237 WLLTEELYVTDGVILQVHGTDRGGDCDELRLLSNETTFINLRAHGGSFSFLGTKVVSWNEGKRTVDTNHEDGRSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCVDKSNPDVFDFVNVYGDMINSNIHHN 393
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI) HSP 1 Score: 157 bits (397), Expect = 1.980e-42 Identity = 84/160 (52.50%), Postives = 107/160 (66.88%), Query Frame = 1
Query: 4 WLLTSDVYIYDGVKLELH--AESGTTGVRLQSDS--KVIELRAYGGWLSLLNTELSSWDLDEADYATNYSAPRSYVTAISEVLDNPPQTCIGHAKNDAGEARFDIINSEVHHLGYHGTEAYGITWKVRGFCVDLSNGDLFDRVNVRGDIRFSDIHHNYFG 471
W L S +YI +G +L + ++ G L + S K I LRA+GG L L T + SWDL N RSY++AISEV+ +P +TC G AKND GEAR DII+SEV+HLG++ +E+YGI +KVRGFC DLSN +LFD V+V GDI SDIH NYFG
Sbjct: 119 WYLESTLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINLRAHGGELMLDGTHVESWDLAAGTVDENNEDGRSYLSAISEVITDPAETCDGTAKNDMGEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDSVSVTGDILGSDIHDNYFG 278 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13983.2916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13983.2916.1 >prot_E-fasciculatus_F_contig13983.2916.1 ID=prot_E-fasciculatus_F_contig13983.2916.1|Name=mRNA_E-fasciculatus_F_contig13983.2916.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=159bp YWLLTSDVYIYDGVKLELHAESGTTGVRLQSDSKVIELRAYGGWLSLLNTback to top mRNA from alignment at E-fasciculatus_F_contig13983:110..3069+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13983.2916.1 ID=mRNA_E-fasciculatus_F_contig13983.2916.1|Name=mRNA_E-fasciculatus_F_contig13983.2916.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13983:110..3069+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13983:110..3069+ >mRNA_E-fasciculatus_F_contig13983.2916.1 ID=mRNA_E-fasciculatus_F_contig13983.2916.1|Name=mRNA_E-fasciculatus_F_contig13983.2916.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13983:110..3069+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |