mRNA_E-fasciculatus_F_contig1398.2915.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1398.2915.1
Unique NamemRNA_E-fasciculatus_F_contig1398.2915.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1398.2915.1 vs. uniprot
Match: A0A6H5JJ24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ24_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.440e-14
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 3 
Query:  309 PRFSVASKLVKSAIVWCVCWWCCNAEAATS--GNPTVSSRLPLSEPATGGAGAPEGWTALTMLLNGGAQSQTVMIRDDADEAEFSATIAEGCREAGVGDEHALYITTQWKL 635
            P    ASK + +  V+ +  W  N  + +S  G  T ++  P+S PA   + A EGWT  T++L+GG + QTVM+R+DADE E  A+IAEG REAG+ +     +T +WKL
Sbjct:    3 PSLPAASKFIIA--VFLMGTWHGNVSSTSSVEGGVTEATLSPVSAPARNESIASEGWT--TLILDGGTKRQTVMVRNDADETEVVASIAEGGREAGMTEPQITEVTAKWKL 109
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BLAST of mRNA_E-fasciculatus_F_contig1398.2915.1 vs. uniprot
Match: D7FK28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK28_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.500e-12
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 3 
Query:  309 PRFSVASKLVKSAIVWCVCWWCCNAEAAT-SGNPTVSSRLPLSEPATGGAGAPEGWTALTMLLNGGAQSQTVMIRDDADEAEFSATIAEGCREAGVGDEHALYITTQWKL 635
            P    ASK   + ++  V  W  N  + +  G  T ++  P+S PA   A A EGWT  T++L+GG + QTVM+R+DADE E  A+IAEG REAG+ +     +T +WKL
Sbjct:    3 PSLPAASKFTLAVLL--VGTWHGNVSSTSVEGGVTEATLSPVSAPARNEAIASEGWT--TLILDGGTKRQTVMVRNDADETEVFASIAEGGREAGMTEPQIADVTAKWKL 108
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BLAST of mRNA_E-fasciculatus_F_contig1398.2915.1 vs. uniprot
Match: D7FK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK29_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.810e-7
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 3 
Query:  486 MLLNGGAQSQTVMIRDDADEAEFSATIAEGCREAGVGDEHALYITTQWKLGK 641
            M+L  G QSQ    R    + + SA IAEGCREAGV DEHA+ ITTQWK+ K
Sbjct:    1 MVLKEGVQSQMTRTR----QRQCSAVIAEGCREAGVSDEHAISITTQWKMEK 48
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1398.2915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JJ24_9PHAE4.440e-1441.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK28_ECTSI2.500e-1241.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK29_ECTSI3.810e-757.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1398contigE-fasciculatus_F_contig1398:11228..13361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue2.9e-12
Seed eggNOG ortholog2880.D7FK28
KEGG koko:K00731
KEGG ReactionR05908
KEGG Pathwayko00512,ko01100,map00512,map01100
KEGG ModuleM00056
EggNOG free text desc.glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
EggNOG OGsKOG2246@1,KOG2246@2759
EC2.4.1.122
COG Functional cat.S
CAZyGT31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categorysignal peptide
Exons2
Model size641
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1398.2915.1prot_E-fasciculatus_F_contig1398.2915.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1398 11228..13074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927888.385115-CDS-E-fasciculatus_F_contig1398:11227..113171622927888.385115-CDS-E-fasciculatus_F_contig1398:11227..11317Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 11228..11317 -
1695995739.4985025-CDS-E-fasciculatus_F_contig1398:11227..113171695995739.4985025-CDS-E-fasciculatus_F_contig1398:11227..11317Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 11228..11317 -
1622927888.3986824-CDS-E-fasciculatus_F_contig1398:12810..130741622927888.3986824-CDS-E-fasciculatus_F_contig1398:12810..13074Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 12811..13074 -
1695995739.5086944-CDS-E-fasciculatus_F_contig1398:12810..130741695995739.5086944-CDS-E-fasciculatus_F_contig1398:12810..13074Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 12811..13074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927888.4120424-UTR-E-fasciculatus_F_contig1398:13074..133611622927888.4120424-UTR-E-fasciculatus_F_contig1398:13074..13361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1398 13075..13361 -
1695995739.5164332-UTR-E-fasciculatus_F_contig1398:13074..133611695995739.5164332-UTR-E-fasciculatus_F_contig1398:13074..13361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1398 13075..13361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1398.2915.1

>prot_E-fasciculatus_F_contig1398.2915.1 ID=prot_E-fasciculatus_F_contig1398.2915.1|Name=mRNA_E-fasciculatus_F_contig1398.2915.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp
MASIFRSPRFSVASKLVKSAIVWCVCWWCCNAEAATSGNPTVSSRLPLSE
PATGGAGAPEGWTALTMLLNGGAQSQTVMIRDDADEAEFSATIAEGCREA
GVGDEHALYITTQWKLGK
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mRNA from alignment at E-fasciculatus_F_contig1398:11228..13361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1398.2915.1 ID=mRNA_E-fasciculatus_F_contig1398.2915.1|Name=mRNA_E-fasciculatus_F_contig1398.2915.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1398:11228..13361- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTGGTGAAAACTACCGTGTTGTATGCACAGGATCCTTTCGTTGGAGCA
AGTCAACTTTTCACACCGCAACCAGGTGCACAAGGCCGCATGCCAGTGCA
TTGATTGGGTCTGCTGCATACGCTCGGAGCGTTGCTGAGTACGGCACCAG
CCTGCTGTCTACTACGGCAGTTGTTGCCTGTGAGCACAGCCGAGAGCGGA
GCACTGCTGTAAGGCCCTAATACTTCTGGACATCAGTGCACGTGAATTGC
CGTTAACGACAGATACAACGTTAGGCTACATAACTCGATGGCATCGATCT
TTCGATCTCCGCGTTTTTCTGTTGCTTCAAAACTTGTCAAATCGGCCATC
GTGTGGTGTGTCTGCTGGTGGTGCTGCAACGCTGAGGCCGCAACATCGGG
GAATCCTACGGTATCATCTCGGCTCCCGCTGTCAGAACCAGCTACAGGAG
GGGCAGGTGCACCAGAAGGGTGGACTGCGTTAACTATGCTTCTCAACGGG
GGCGCCCAAAGCCAGACTGTCATGATCAGGGACGACGCGGACGAGGCGGA
GGTACTGTTTTTTTTTATCTAACACAACGAATAACGGAAATCTCTTCGCC
AACACGGCACCACCGCAATCTGTAAATAGGAGTAAAGCAAATATTGGGCT
TTTTGTTTTTACTATTTGGGGGGGGGGGTTGGGCGACAAGTCAAAAGTGT
CAACGACAGACACAGTTAGCACCCGCGCGATTCACAAACAAGGCTCAGAC
GTTGCGATACAACAAGAAAAACTGAGAAACACACACCACAACCAGTTTTT
CGTGGACCCTACACTAAACTCTATATGAATTACCTATGTTCGACGGTGGC
GACGATAAAGAAGTTGAGCCTCGACCCCAAAGCGACGTTTCTTGAACGCG
GGCACTAACTGTAAGAATCTGGGATAGGTTGCCAATGAATTCATGGCGTT
ATATCATGGCAACCTTGCTCGTGTTTCCACGATTCCCCGAGCAGCTTAGT
CTACAGCAACGGCAACGTCTCCGCTGCGGCTTGCAGACCCCCTCTGTTAC
ACCCCTGCTTTACACGCTCCCTTTGTTACACCTTTGGCGTGTTGGACATC
TCTTTTATTACACCCGTTGTTTGGTGCGTTCTAAGCTTGCATAGCCTACG
GCCTACCCTTTTAGCGTTTTTTTTCTTCTTCTCTGGTCCATTAAAGGGCC
ACGGAGATTATTTTAGTCTGACTACTTCAACGCTGCTACTGCTGTAGAAC
GGTTAATGATACTCCTCTCCAGTGTACTCACGAACGGGCGCCTCTACTCG
GTACGAAAGGCGGTACCGTTGATACCTTCATTCATCTCCACATCTCGTTC
AATACTCAAGTGTAGCCCCCGAATTCCCGCACAAGTGTGCGTTAGCTGCC
ATATGGATATACAACTCCAGCGGAGTCGAGGGTCGAGAGAGACATCCATG
GAAACGACAAGAACGTCGATGGAAGGTAGTTAAGTATATGAACATAAAGA
GTTCCACGGAAGTAAATCTCTTTTTAGTAGCGAAGTTGCCTTCATGGACG
TTTTCGTGCTTCCATGAAAGGCCGAGGACTATGCCGAGGGACGAACTTCC
ATGGGATTTCTGACTGCCATGAAAAACTCTTCGCCATCTCGTCGAATATT
AAAATGCGACTTTCCACGAAGAAAGCAACGGACAGTTCGTACGCACGGCT
TTCATGGCAGTTGTTAACAAGTTCGATGGAGGAAGCATCATGAAAGCTGG
CGCCAGAAACCAACCATATTGGGTCCATATTGCTTCCATACAGCTTCCAA
TCGGCTTCCATGGCAGTTGAATAGGTTTCCTCCGTGGAAGTTCTACAAGC
CTGCATGGACCCTTGGACAACTATGTAGGGTATCCCATAATAGGCAGCTT
GCTTGACAACGTCGCCAACACTTGATAGTACACACGTCCTACAACCTGAG
CACATAACGGTGATGGCTACAGATAGATGTGGTACACGCGCTTCACAAAA
AGCAAAATGGTATGTCTTTGTCCCCGTTGTGCTTGCTTGGACAGTTTAGC
GCCACGATTGCCGAGGGCTGTCGAGAGGCCGGCGTCGGCGATGAACACGC
TCTCTACATCACGACCCAGTGGAAGTTGGGCAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1398:11228..13361-

>mRNA_E-fasciculatus_F_contig1398.2915.1 ID=mRNA_E-fasciculatus_F_contig1398.2915.1|Name=mRNA_E-fasciculatus_F_contig1398.2915.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1398:11228..13361- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCATCGATCTTTCGATCTCCGCGTTTTTCTGTTGCTTCAAAACTTGT
CAAATCGGCCATCGTGTGGTGTGTCTGCTGGTGGTGCTGCAACGCTGAGG
CCGCAACATCGGGGAATCCTACGGTATCATCTCGGCTCCCGCTGTCAGAA
CCAGCTACAGGAGGGGCAGGTGCACCAGAAGGGTGGACTGCGTTAACTAT
GCTTCTCAACGGGGGCGCCCAAAGCCAGACTGTCATGATCAGGGACGACG
CGGACGAGGCGGAGATGGCATCGATCTTTCGATCTCCGCGTTTTTCTGTT
GCTTCAAAACTTGTCAAATCGGCCATCGTGTGGTGTGTCTGCTGGTGGTG
CTGCAACGCTGAGGCCGCAACATCGGGGAATCCTACGGTATCATCTCGGC
TCCCGCTGTCAGAACCAGCTACAGGAGGGGCAGGTGCACCAGAAGGGTGG
ACTGCGTTAACTATGCTTCTCAACGGGGGCGCCCAAAGCCAGACTGTCAT
GATCAGGGACGACGCGGACGAGGCGGAGTTTAGCGCCACGATTGCCGAGG
GCTGTCGAGAGGCCGGCGTCGGCGATGAACACGCTCTCTACATCACGACC
CAGTGGAAGTTGGGCAAGTTTAGCGCCACGATTGCCGAGGGCTGTCGAGA
GGCCGGCGTCGGCGATGAACACGCTCTCTACATCACGACCCAGTGGAAGT
TGGGCAAG
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