mRNA_E-fasciculatus_F_contig1398.2914.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1398.2914.1
Unique NamemRNA_E-fasciculatus_F_contig1398.2914.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: D7FK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK29_ECTSI)

HSP 1 Score: 470 bits (1209), Expect = 1.020e-165
Identity = 228/261 (87.36%), Postives = 243/261 (93.10%), Query Frame = 1 
Query:    1 QFSATIAEGCREAGVGDEHALYITTQWKLGKLKAWRSEQNRTGLVLNPSLKRIFQSFFGRMAGLAEEQPFHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGSPPPENSGYDMAAIEDRFRSNMARIPNGDRVIAFKGASLESLADLLASGLRSRFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDYWMRGVAQGTAAFEEALGDNLEVLHRDETHLVVTKVADDRFATHGSELLLGDGSRLQKLTSRNPTA 783
            Q SA IAEGCREAGV DEHA+ ITTQWK+ KLKAWR EQNRTGLVLNPSLK +FQ FFG MAGLAEEQPFHVLETGSWQG SASWIAEHILKHPESILVCLDTWNGSPPPENSGY+MAAIEDRFRSNMAR+PNGDRV+AFKG SLESLA++LASGL SRFDAVF+DGSHEM++VL DALLSFR+LKVGGVMIFDDYWMRGVA  TAAFEEALGD LEVLHRDETHLVVTK A++RF+THGSELLLGD SRLQKLTSRNPTA
Sbjct:   18 QCSAVIAEGCREAGVSDEHAISITTQWKMEKLKAWRLEQNRTGLVLNPSLKSVFQRFFGGMAGLAEEQPFHVLETGSWQGESASWIAEHILKHPESILVCLDTWNGSPPPENSGYEMAAIEDRFRSNMARVPNGDRVVAFKGTSLESLANILASGLDSRFDAVFLDGSHEMKNVLRDALLSFRMLKVGGVMIFDDYWMRGVAHATAAFEEALGDYLEVLHRDETHLVVTKAANERFSTHGSELLLGDSSRLQKLTSRNPTA 278
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BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: A0A6H5JQS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS8_9PHAE)

HSP 1 Score: 372 bits (954), Expect = 4.800e-128
Identity = 182/203 (89.66%), Postives = 191/203 (94.09%), Query Frame = 1 
Query:  181 MAGLAEEQPFHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGSPPPENSGYDMAAIEDRFRSNMARIPNGDRVIAFKGASLESLADLLASGLRSRFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDYWMRGVAQGTAAFEEALGDNLEVLHRDETHLVVTKVADDRFATHGSELLLGDGSRLQKLTSRNPTA*T 789
            MAGLAEEQPFHVLETGSWQG SASWIAEH+LKHPESILVCLD WNGSPPPENSGYDMAAIEDRFRSNMARIPNGDRV+AFKG+SLESLA++LASGL SRFDAV +DGSHEM DVLGDALLSFR+LKVGGVMIFDDYWMRGVAQ TAAFEEALGD LEVLH DETHLVV+K A+ RFATHGSELLLGD SRLQKLTSRNPTA T
Sbjct:    1 MAGLAEEQPFHVLETGSWQGESASWIAEHVLKHPESILVCLDKWNGSPPPENSGYDMAAIEDRFRSNMARIPNGDRVVAFKGSSLESLANILASGLDSRFDAVLLDGSHEMNDVLGDALLSFRMLKVGGVMIFDDYWMRGVAQATAAFEEALGDYLEVLHSDETHLVVSKAANKRFATHGSELLLGDSSRLQKLTSRNPTAST 203
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BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: D7FK47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK47_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 2.130e-89
Identity = 132/218 (60.55%), Postives = 169/218 (77.52%), Query Frame = 1 
Query:   16 IAEGCREAGVGDEHALYITTQWKLGKLKAWRSEQNRTGLVLNPS-LKRIFQSFFGRMAGLAEEQPFHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGSPPPENSGYDMAAIEDRFRSNMARIPNGDRVIAFKGASLESLADLLASGLRSRFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDYWMRGVAQGTAAFEEALGDNLEVLHRD 666
            +AEGCR+ G  + HA   T +W + +++      NRTG +   +  K IFQ+F G M   AEE+PF VLE+GSW+G SASW+AEH+LKH ES+LVCLDTW+G    EN+G+DM ++E+RF  NM + PNG+RV+AFKG SLESLA L+ASGL S FD V++D SHEM+D LGDALLSFRLLKVGGVMIFDD+WM+GVA+ T+AFEEAL D+L+VLH+D
Sbjct:    1 MAEGCRKIGASEYHAAQGTARW-MEQIEG--RGYNRTGYMFEATGSKNIFQTFLGEMMEAAEERPFFVLESGSWEGGSASWVAEHLLKHSESLLVCLDTWDGGQEMENTGFDMVSVEERFHWNMGKAPNGERVVAFKGDSLESLAGLVASGLTSSFDVVYVDASHEMKDTLGDALLSFRLLKVGGVMIFDDFWMKGVARATSAFEEALWDSLQVLHKD 215
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BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: A0A7S4KFR5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KFR5_9EUKA)

HSP 1 Score: 117 bits (294), Expect = 1.540e-28
Identity = 63/174 (36.21%), Postives = 97/174 (55.75%), Query Frame = 1 
Query:  187 GLAEEQPFHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGSP-----PPENSGYDMAAIEDRFRSNMARIPNGDRVIAFKGASLESLADLLASGLRS-------RFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDYWMR---GVAQGTAAFEEALGDNLEVLHR 663
            G     P  +LE G+++G++  W+AEH+L+H +S L+C+D W+ +       P     ++A    RF +N+AR PNG RV  F+G++L +L  ++A+            FD +++D  H   DVL DA L+FRLL+VGG++ FDDY  R   G+    AA E    + LE   R
Sbjct:    3 GSPAAMPVRILELGAFEGSTTMWLAEHLLRHKDSWLLCVDLWSTASLAAVGQPIAGTPELANTLGRFSANVARTPNGGRVRTFRGSTLAALGGMIAAAADGDQAAEGDAFDLIYVDAGHSASDVLADAALAFRLLRVGGLVFFDDYHGRCRDGIDAAVAAHEPGTFERLEADQR 176
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BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: A0A066XH38_COLSU (Putative SAM-dependent methyltransferase n=1 Tax=Colletotrichum sublineola TaxID=1173701 RepID=A0A066XH38_COLSU)

HSP 1 Score: 117 bits (293), Expect = 5.860e-28
Identity = 62/153 (40.52%), Postives = 97/153 (63.40%), Query Frame = 1 
Query:  169 FFGRMAGLAEEQP-------FHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGSPPPEN------SGYDMAAIEDRFRSNMARIPNGDRVIAFKGASLESLADLLASGLRSRFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDY 588
            +F R  G  EE+          +LE GS++G SA+WI ++++ HPES    +DT+ GS   EN      + YD+ ++E RFRSN+A+  + D++   K +SL++L  L   G  +RFD ++IDGSH   DVL DA++S+++L+VGG ++FDDY
Sbjct:   23 WFERTLGYWEERTRSLRGKKLRILEVGSFEGGSATWILDNLMSHPESTFTTVDTFEGSMEFENDTYKDLAAYDIPSLERRFRSNVAKCQHVDKLTIMKQSSLDALVALSHQG--ARFDFIYIDGSHVAFDVLHDAVVSWKMLEVGGTIVFDDY 173
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BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: H1V2F9_COLHI (SAM-dependent methyltransferase n=3 Tax=Colletotrichum destructivum species complex TaxID=2707350 RepID=H1V2F9_COLHI)

HSP 1 Score: 117 bits (292), Expect = 8.210e-28
Identity = 58/131 (44.27%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:  214 VLETGSWQGASASWIAEHILKHPESILVCLDTWNGSPPPENS------GYDMAAIEDRFRSNMARIPNGDRVIAFKGASLESLADLLASGLRSRFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDY 588
            V+E GS++G SA+WI ++++ HPES    +DT+ GS   EN        YD+ ++E RFRSN+A+  + D++   K +SL++LA L   G  +RFD ++IDGSH   DVL DA+L++ +L+VGG ++FDDY
Sbjct:   45 VMEVGSFEGGSATWILDNLMDHPESTFTAIDTFGGSMEFENDTYKEFEAYDIPSLEKRFRSNVAKCRHVDKLTVIKRSSLDALATLKHQG--ARFDFIYIDGSHVAFDVLHDAVLAWGMLEVGGTIVFDDY 173
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BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: A0A1G5IZ77_9HYPH (Methyltransferase domain-containing protein n=1 Tax=Microvirga guangxiensis TaxID=549386 RepID=A0A1G5IZ77_9HYPH)

HSP 1 Score: 115 bits (289), Expect = 1.270e-27
Identity = 64/145 (44.14%), Postives = 86/145 (59.31%), Query Frame = 1 
Query:  202 QPFHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGSPPPENSG---YDMAAIEDRFRSNMARI----PNGDRVIAFKGASLESLADLLASGLRSRFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDY-WMRGVAQG 612
            QP  +LE GS++GASA ++ + +       L C+DTW G    +  G    DM+A+E RF  N   +    PN   ++  KG S   LA +LASG  S FD V++DGSH+  DVL DA+LSFRLLK GG++IFDDY W   +  G
Sbjct:   27 QPRKILEIGSYEGASAYYLVQKLAPLHPLELHCIDTWEGGIEHQEGGGAETDMSAVEARFLKNARTMAESAPNPVELVVHKGFSHAQLAKILASGHESSFDMVYVDGSHQAPDVLCDAILSFRLLKTGGLLIFDDYLWFEDLPSG 171
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BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: A0A7T4N0Q6_9BURK (Class I SAM-dependent methyltransferase n=1 Tax=Paraburkholderia ginsengisoli TaxID=311231 RepID=A0A7T4N0Q6_9BURK)

HSP 1 Score: 115 bits (288), Expect = 1.780e-27
Identity = 73/183 (39.89%), Postives = 98/183 (53.55%), Query Frame = 1 
Query:  205 PFHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGS---PPPENSGYDMAAIEDRFRSNM----ARIPNGDRVIAFKGASLESLADLLASGLRSRFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDY-WMRGVAQGTA----------AFEEALGDNLEVLHRDETHLVVTKVAD 699
            P  +LE GS++GASA ++ + +       L C+DTW G     P  ++  DM+A+E RF  N+     + P+  RV   KG S E LA LLA G +  FD V++DGSH+  DVL DA+L FRLLKVGG++ FDDY W   +  G            AF       LEVL      L V K++D
Sbjct:   28 PARILEIGSYEGASARYLIDALAPRQPIELHCIDTWEGGVEHQPGGDAPADMSAVEARFHHNVRLAAGKYPDRVRVTVHKGYSDECLARLLADGKKGYFDFVYVDGSHQAADVLADAVLGFRLLKVGGIIAFDDYLWSEQLPSGKDPLRCPKPAIDAFVNLNFRKLEVLSAPLYQLYVRKLSD 210
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BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: A0A7Y0XYH9_9CHLB (Class I SAM-dependent methyltransferase n=1 Tax=Chlorobiaceae bacterium TaxID=2067991 RepID=A0A7Y0XYH9_9CHLB)

HSP 1 Score: 114 bits (286), Expect = 3.970e-27
Identity = 57/143 (39.86%), Postives = 89/143 (62.24%), Query Frame = 1 
Query:  202 QPFHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGSPPPENSGYDMAAIEDRFRSN----MARIPNGDRVIAFKGASLESLADLLASGLRSRFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDY-WMRGVAQGT 615
            +P  +LE GS++GAS  ++ E +       + C+DTW G    ++ G DMAA+E RF  N    ++++    R++  KG S  SLA L++    + FD V++DGSH+  DVL DA++SF+LL+VGG+M+FDDY W   +  G+
Sbjct:   35 KPKKILEIGSYEGASTCYLIEKLAVDSTIEIHCIDTWEGGIEHQDCGIDMAAVESRFLHNTSLALSKVSMSVRLVLHKGYSDYSLAALISQNHGNSFDMVYVDGSHQAPDVLADAVMSFKLLRVGGIMVFDDYLWSEELQYGS 177
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Match: A0A7S2V1H4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1H4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.030e-27
Identity = 64/175 (36.57%), Postives = 95/175 (54.29%), Query Frame = 1 
Query:  205 PFHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGSPPPENSGYDMAAIEDRFRSNMARIPNGDRVIAFKGASLESLADLLASGLRSRFDAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDYWM-------RGVAQGTAAFEEALGDNLEVLHRDETHLVVTKVADDRF 708
            P H+LE G  +G SAS+   ++L H ES   C+D W  +  P +      + + R+  N    PN +++   +G SL  LA L+  G   ++D +++DG HE+ +VL D++LSFRLLK+GG+MIFDDY         +    G  AF      N+EVL+    + VV K   DRF
Sbjct:    3 PIHILEIGCHEGGSASFYQRYMLHHQESTYTCIDPW--AIRPNDMTLPADSFKTRYHQNTCSHPNKEKIRILEGDSLSGLAQLV--GENKKYDVIYVDGGHEVSEVLADSVLSFRLLKIGGLMIFDDYLQNLDLGEDQRAKAGIDAFLLGFQSNIEVLYT--FYQVVIKKLSDRF 171
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1398.2914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK29_ECTSI1.020e-16587.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQS8_9PHAE4.800e-12889.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK47_ECTSI2.130e-8960.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4KFR5_9EUKA1.540e-2836.21Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A066XH38_COLSU5.860e-2840.52Putative SAM-dependent methyltransferase n=1 Tax=C... [more]
H1V2F9_COLHI8.210e-2844.27SAM-dependent methyltransferase n=3 Tax=Colletotri... [more]
A0A1G5IZ77_9HYPH1.270e-2744.14Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7T4N0Q6_9BURK1.780e-2739.89Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A7Y0XYH9_9CHLB3.970e-2739.86Class I SAM-dependent methyltransferase n=1 Tax=Ch... [more]
A0A7S2V1H4_9STRA5.030e-2736.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1398contigE-fasciculatus_F_contig1398:7121..11320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score373.6
Seed ortholog evalue5.7e-101
Seed eggNOG ortholog2880.D7FK29
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2DZ7R@1,2S6WK@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-04_006040.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size900
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1398.2914.1prot_E-fasciculatus_F_contig1398.2914.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1398 7235..10127 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927888.2221692-UTR-E-fasciculatus_F_contig1398:7120..72341622927888.2221692-UTR-E-fasciculatus_F_contig1398:7120..7234Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1398 7121..7234 -
1695995739.4221776-UTR-E-fasciculatus_F_contig1398:7120..72341695995739.4221776-UTR-E-fasciculatus_F_contig1398:7120..7234Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1398 7121..7234 -
1622927888.3147545-UTR-E-fasciculatus_F_contig1398:10127..102141622927888.3147545-UTR-E-fasciculatus_F_contig1398:10127..10214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1398 10128..10214 -
1695995739.4817436-UTR-E-fasciculatus_F_contig1398:10127..102141695995739.4817436-UTR-E-fasciculatus_F_contig1398:10127..10214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1398 10128..10214 -
1622927888.3298604-UTR-E-fasciculatus_F_contig1398:11227..113201622927888.3298604-UTR-E-fasciculatus_F_contig1398:11227..11320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1398 11228..11320 -
1695995739.4895885-UTR-E-fasciculatus_F_contig1398:11227..113201695995739.4895885-UTR-E-fasciculatus_F_contig1398:11227..11320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1398 11228..11320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927888.2339807-CDS-E-fasciculatus_F_contig1398:7234..73511622927888.2339807-CDS-E-fasciculatus_F_contig1398:7234..7351Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 7235..7351 -
1695995739.4344604-CDS-E-fasciculatus_F_contig1398:7234..73511695995739.4344604-CDS-E-fasciculatus_F_contig1398:7234..7351Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 7235..7351 -
1622927888.2494054-CDS-E-fasciculatus_F_contig1398:7745..79041622927888.2494054-CDS-E-fasciculatus_F_contig1398:7745..7904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 7746..7904 -
1695995739.44552-CDS-E-fasciculatus_F_contig1398:7745..79041695995739.44552-CDS-E-fasciculatus_F_contig1398:7745..7904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 7746..7904 -
1622927888.2622325-CDS-E-fasciculatus_F_contig1398:8911..90581622927888.2622325-CDS-E-fasciculatus_F_contig1398:8911..9058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 8912..9058 -
1695995739.4541683-CDS-E-fasciculatus_F_contig1398:8911..90581695995739.4541683-CDS-E-fasciculatus_F_contig1398:8911..9058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 8912..9058 -
1622927888.2785265-CDS-E-fasciculatus_F_contig1398:9469..96101622927888.2785265-CDS-E-fasciculatus_F_contig1398:9469..9610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 9470..9610 -
1695995739.4623654-CDS-E-fasciculatus_F_contig1398:9469..96101695995739.4623654-CDS-E-fasciculatus_F_contig1398:9469..9610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 9470..9610 -
1622927888.2946181-CDS-E-fasciculatus_F_contig1398:10085..101271622927888.2946181-CDS-E-fasciculatus_F_contig1398:10085..10127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 10086..10127 -
1695995739.4712832-CDS-E-fasciculatus_F_contig1398:10085..101271695995739.4712832-CDS-E-fasciculatus_F_contig1398:10085..10127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1398 10086..10127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1398.2914.1

>prot_E-fasciculatus_F_contig1398.2914.1 ID=prot_E-fasciculatus_F_contig1398.2914.1|Name=mRNA_E-fasciculatus_F_contig1398.2914.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=202bp
MAGLAEEQPFHVLETGSWQGASASWIAEHILKHPESILVCLDTWNGSPPP
ENSGYDMAAIEDRFRSNMARIPNGDRVIAFKGASLESLADLLASGLRSRF
DAVFIDGSHEMEDVLGDALLSFRLLKVGGVMIFDDYWMRGVAQGTAAFEE
ALGDNLEVLHRDETHLVVTKVADDRFATHGSELLLGDGSRLQKLTSRNPT
A*
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mRNA from alignment at E-fasciculatus_F_contig1398:7121..11320-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1398.2914.1 ID=mRNA_E-fasciculatus_F_contig1398.2914.1|Name=mRNA_E-fasciculatus_F_contig1398.2914.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4200bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1398:7121..11320- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTTTAGCGCCACGATTGCCGAGGGCTGTCGAGAGGCCGGCGTCGGCGA
TGAACACGCTCTCTACATCACGACCCAGTGGAAGTTGGGCAAGGTACGAA
AGGATGTGTGGAGAAGGAGCACTCAGTCTAGACAACCAAGGTTTCGAGGA
TCTAGACATTGATGGCTCTCTACCCCGACCTTGCGGCTTGGAGGGTGGAT
GCAAGAAACTCGGTCTTGCTGGAACAGCAGCAGATCATTTGTAGCCGAGA
CGATCGGACACGATGATGACACGATGGTGCCTAAATAGCGTCACGAGCCA
GTCATCGCGGCCTTCTTCTCCCCGAAACGTGAGGAGAGATGTGAGTGAGG
TACAAGGAGTGTCACAACGATGAGCAGGAGAACTTATGATGAAGCACCAA
GAGAGTTTTATCACAGTGAGTGGCAAGCGCAGCCAGCGATGCTGGGCGCG
GTGCGTTGAACGCTATTCTTGCTGTCTCGCAATACTCTGCCTCGTTATGA
CCTTTTGTGGTTCCTACTGTACGTTCGTACCACTTTTGCGTTTGTATTGG
TTCTTTGGACCCTCTGTTCTGAATATATCATGCATTCTATGCTCTTCTGG
GGTAGTTGGACCAGTACCGATAGAAGGTACTGGGCAAAGATTGGCATGTT
TTTTATTGTGAAGACAACAAGATATGGAGACGTTTTGATCTCGTACCGAT
GGCCTTGCGCAAAAAGCACAGCTACGCCAACCACTTCTTTTGAACACCTT
GTCCAGCATCTCATGAACATGTTTTACGTTCAACAAGCTGGCACCATTCC
CCCTGACACATGTTTCGACCGTTGGCGACTTGAGGATTTCGAGCTTCGAA
GGGGTTTTCATCCCTTCAGCTTCCTCGCTGCCATTGCTGCTACGCTGGGC
TATCAATAAGTCTCTGTCAAAATCAAATCAATATGGTGGTGAGGCGTGCA
TGAGGGGTTTGCTCCATTGGTTAGGACCGAGTCTCTGCGTGAGGTACGCG
AACAAAAACATGCGGTTGTGTAAAAACGCGCTAGAAATATGGTGCTCCCC
TCCCCCGTGCTTGGCATGGGGTTTCTTCTCGTGATATGTGTGTGTGCCCC
GTGCAGCTCAAAGCATGGCGTTCGGAGCAAAATCGTACAGGATTAGTGCT
GAATCCGAGTTTAAAAAGAATCTTCCAGAGCTTCTTTGGAAGGATGGCGG
GCCTGGCGGAGGAGCAGCCGTTTCACGTTCTTGAGGTATATATCGTATGA
CATCCGCAGAAAACCCAACCTTTGCAACGTGCGTGCTGTACCGTAGCGTC
GTTGTCCCAAACTCGGGTCACAACATGTACTCTTTGAGAGTAAGGTTTGA
CCAATGTTGCTCATCGTAGAATTGTGAAGCATGTAGACTTCAACCTTTAC
ATTCCATCAGTTTACCGCAGGCGGCTGCCATCGCAAGCGCGGCATTACAA
CTGCAACAAATGTTCGGATGTCACAAACATGTGAGGGCTGGTTTGTTTAC
CTAAAGAACTCGTGTGGTAGTTACCGAATCTCCTCAACCCCGCTTGTATG
ACCGTATTCGGAGAAAAAATAAGGAGGGTATACAGGGAAATGCTTGTGTA
GAGCATGCTGGAGGCCCTTCACTCGAATTTAGATAGTGATTGGGGCACCG
AACGAAGAACGTGATTGGAATGCGATCTCTCTTGGTTCTTATTCGCGGTT
TCTCGCTCAGACTGGCAGCTGGCAGGGAGCTTCGGCATCATGGATCGCAG
AGCATATTCTGAAACATCCAGAATCTATTCTCGTCTGCCTGGATACATGG
AACGGGAGTCCGCCGCCAGAGAACTCCGGATACGACATGGCTGCTATAGA
GGTAACGGTGCTATAGCTCGTCTGCGACCCTTCTACTCCTTGCCGATTGA
TGCACGGAGACGAAGCGGCTTGTTTCCTCCGGAGGTTCTGTTTACCCTCA
TCCTTCCTAGACGTACGTGTCACCCAAAGTATATATGACCGGGATGTTTC
CATCGTGTAATCCGTGGCGTTTGTTATCTTGCAACGCTGCGGTGACCTCA
ACCAGACAAAAGACTCCCAAGTAAATTCTTCGCGAAAAGAACTATTTGTG
TTGTATAGATGTCTAGGGACGACCGTTTAGCCAACCTTTCTACGTAGTTT
GCAAACCTCTGTACAACCCCCAAAGACAGCTGGATAGAGCAAGATTCCTT
CGCACCACGCTAGCCCGCACACCCGGATATCTAAACCCTGTTCGATCTTT
GCACGCACGCAGGACCGATTTCGCTCGAACATGGCTAGGATCCCTAATGG
CGATCGTGTGATCGCCTTCAAAGGCGCCTCTCTTGAGTCTCTGGCAGACC
TCCTGGCCAGCGGGCTTCGTTCTCGCTTCGATGCTGTCTTCATAGATGGT
TCGCATGAGGTGATGTGCGACGTTTGAAAGGAACGCGTAGGCCAGGAGTA
TCGCGTGCTTGGCGACGATTTGGCAGGATTTTGCTCTCCCAGGGAACCAT
GTTGTTTGTGCCAGCACGGCCCGGCTTCGTTACCGTACTTTGGGGTACCT
TTATAGCACAGCCCGTTTCTTTTGTAGCTTTACGGTTGAAACGTGGCGTC
GGAGCGTCTCCTGCTTGTGGGGGGCACGCACGACGGGATCGGACGGCATT
CGTGGTTTTACGTTTGATCGTGACAGTGACCTTGCATCCGTGACTCTACC
GGGTTACCCCTCAGAGAATTTTCTCACTGGTCCTCTCAGCTACCTGCAGG
CTGAGCACGCGAGGGTCGTGGCTTGATCCTCTACAACATCATTGAACCCA
ACACGTTCAGTAGGGCCCCGAAAACCAACCCTCTCTGTAAGCAACGATCC
CCCGAGAGCTTCCTCCCCACTTTACCAAGCGCTTTGAGGTAATCACCTTG
TACTTGACCGCCCCAAATTGCCTCGTCCGTCCTCCCACAAGTTGTTTGGG
TGAATGTCGGGGGGAAAAACGCGGTTCTGGCATTCGTAAACTGACCCATT
GAGAAACCTGCAGAACTATTTGTAACGCAAAACCCGCACGCACACGGCAT
CAGGAGTTGTATCCGACGGATCGTAATACTATTTCTCAATGACAGCTCGA
TAACGATTGTTACCGTTCTTGCGGTGACAAAGATTGCAACAGTGCCAATT
GCCACCCCTCTGCCGATCCTTATCCTCACGCAACACGGAACAAAAGACAT
GGAACGGCCCTACGATAACTGGCCGAAACGCGATGTTAAGACAATGAACG
AGCGGTGAAACGAGCTCTTGACTTCATCAGAGCAAACTCCCCCAGCTGCG
GATGAAAGTAACGTGATTCAAGCCGGACTACGTGTTGAGTGCAGCGGAAC
CGTAATCGTGACCCTCCCGTCCTCCCAACATCATTCCCCCCACTTCCCAC
CGTACCCCATCATCAGATGGAGGATGTGCTGGGGGACGCGCTCTTGTCGT
TCCGCTTGCTCAAGGTGGGAGGTGTCATGATCTTCGACGACTACTGGATG
CGAGGGGTAGCGCAAGGGACAGCAGCGTTCGAGGAAGCCCTCGGGGACAA
CCTCGAAGTTTTGCACAGAGACGAGGTAGGATTCTGGCATTCCTGGCTTT
ACCTTGGAGGGCTAGCGTTTAATGGCCGATGCAAGATAAATGAGACAAAG
CGTTTACACAAGGCGTACGACACATTGAGCGCCCCAAGTACCGAAAGGGA
CAGTTTGCCCATCTCAGACCCATGAGGACGGTGTGGGCAACTATGCAACG
GAGACTACGGTTGATTTCCTGCGGGGGAGACTAAAATGGCAGCGTGCGTC
TACGTCCCCCAAGCCAATCGAGGCGTGAATACAACCCAAAATTGCAGAAG
GAAGAAAAATCTTACTCTCGGGTTTCCGATCGTTCCGCCACGAAGACCCC
TACATACTATTCTCGAATGTCGTTTTTCGCCTGACGCCTTGCTCACGTAC
TTGTGGTCGTTGTTGGCAGACTCATCTGGTTGTGACGAAAGTGGCCGACG
ATCGTTTTGCGACACATGGCAGCGAACTATTGCTAGGCGACGGCTCAAGA
CTGCAGAAGCTAACCAGTCGGAATCCTACGGCCTAGACTAGATAAGGATA
AAGCCGGCGTCGTCGCTCTTGCCCATTTTCTGGTCGAGGGAGAGGATGGC
TGTCAGGGAAACAGTAGAATGGCGACGTTGCAGGTGTTGTTCTAAGCGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1398:7121..11320-

>mRNA_E-fasciculatus_F_contig1398.2914.1 ID=mRNA_E-fasciculatus_F_contig1398.2914.1|Name=mRNA_E-fasciculatus_F_contig1398.2914.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1398:7121..11320- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGGCCTGGCGGAGGAGCAGCCGTTTCACGTTCTTGAGATGGCGGG
CCTGGCGGAGGAGCAGCCGTTTCACGTTCTTGAGACTGGCAGCTGGCAGG
GAGCTTCGGCATCATGGATCGCAGAGCATATTCTGAAACATCCAGAATCT
ATTCTCGTCTGCCTGGATACATGGAACGGGAGTCCGCCGCCAGAGAACTC
CGGATACGACATGGCTGCTATAGAGACTGGCAGCTGGCAGGGAGCTTCGG
CATCATGGATCGCAGAGCATATTCTGAAACATCCAGAATCTATTCTCGTC
TGCCTGGATACATGGAACGGGAGTCCGCCGCCAGAGAACTCCGGATACGA
CATGGCTGCTATAGAGGACCGATTTCGCTCGAACATGGCTAGGATCCCTA
ATGGCGATCGTGTGATCGCCTTCAAAGGCGCCTCTCTTGAGTCTCTGGCA
GACCTCCTGGCCAGCGGGCTTCGTTCTCGCTTCGATGCTGTCTTCATAGA
TGGTTCGCATGAGGACCGATTTCGCTCGAACATGGCTAGGATCCCTAATG
GCGATCGTGTGATCGCCTTCAAAGGCGCCTCTCTTGAGTCTCTGGCAGAC
CTCCTGGCCAGCGGGCTTCGTTCTCGCTTCGATGCTGTCTTCATAGATGG
TTCGCATGAGATGGAGGATGTGCTGGGGGACGCGCTCTTGTCGTTCCGCT
TGCTCAAGGTGGGAGGTGTCATGATCTTCGACGACTACTGGATGCGAGGG
GTAGCGCAAGGGACAGCAGCGTTCGAGGAAGCCCTCGGGGACAACCTCGA
AGTTTTGCACAGAGACGAGATGGAGGATGTGCTGGGGGACGCGCTCTTGT
CGTTCCGCTTGCTCAAGGTGGGAGGTGTCATGATCTTCGACGACTACTGG
ATGCGAGGGGTAGCGCAAGGGACAGCAGCGTTCGAGGAAGCCCTCGGGGA
CAACCTCGAAGTTTTGCACAGAGACGAGACTCATCTGGTTGTGACGAAAG
TGGCCGACGATCGTTTTGCGACACATGGCAGCGAACTATTGCTAGGCGAC
GGCTCAAGACTGCAGAAGCTAACCAGTCGGAATCCTACGGCCTAGACTCA
TCTGGTTGTGACGAAAGTGGCCGACGATCGTTTTGCGACACATGGCAGCG
AACTATTGCTAGGCGACGGCTCAAGACTGCAGAAGCTAACCAGTCGGAAT
CCTACGGCCTAG
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