|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig13979.2912.1 vs. uniprot
Match: A0A6H5JU77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU77_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 5.500e-10 Identity = 64/123 (52.03%), Postives = 68/123 (55.28%), Query Frame = 2
Query: 479 RTTATSPPQPRPVAEPPRGSPES-PRPXX-----PAFGSPSPHAAADDADGDSSDSTRIATRLAIAHNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGVESCPPAL-PAVATADIDNDTA 826
RT +SPPQPRPVA+ PRGSPES P P X PAFGSPS A + D S+ STRIATRLAIAHNN GVGVES PPAL PAVA A DND A
Sbjct: 72 RTATSSPPQPRPVADLPRGSPESSPAPPXXXXXXPAFGSPSHRADSSD----SAMSTRIATRLAIAHNNAAARRRHARLLDARSMRRSITASLRP---GVGVESHPPALLPAVAIATADNDAA 187
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-08_004210.2 |
| Exons | 3 |
| Model size | 1535 |
| Cds size | 981 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13979.2912.1 >prot_E-fasciculatus_F_contig13979.2912.1 ID=prot_E-fasciculatus_F_contig13979.2912.1|Name=mRNA_E-fasciculatus_F_contig13979.2912.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=327bp
MPVRQREPSPASSPACRPEEEAPLAASEGGGGTIEMEEPRTPVGSGGGDE
QLAVANATAAAAALLAVDRTTATSPPQPRPVAEPPRGSPESPRPPPPAFG
SPSPHAAADDADGDSSDSTRIATRLAIAHNNAAAARRRHARLLDARSMRR
RSTTALLPPPGVGVESCPPALPAVATADIDNDTAAAAAAGGAAGSGGSSA
FAAASDGWSRRVGEARAAAAAAGVGGGGMMAESSITDEDDDIIGSDTSGT
VDSSAVHATTRSGAAEHNNTATTCCCCCCCYCASVWWCPQEAKPHQHYRQ
PYRRCSDCWCCPSVYPQEARLSCHYY* back to topmRNA from alignment at E-fasciculatus_F_contig13979:1286..3398+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13979.2912.1 ID=mRNA_E-fasciculatus_F_contig13979.2912.1|Name=mRNA_E-fasciculatus_F_contig13979.2912.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2113bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13979:1286..3398+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGATGAACTGAACTGTGAATTCGAACCCCAGTCTCTCGCTTCCCTTTC
TCTCCCTCTCTCTCTCTCTCTCTAGCACTAGCACTCACTCATCGTCTGGC
GCAGGGCGGGAGCGCCCGCTGCACTCGTCGTCGCGCGGCTCGCCATCATC
CCAAGGGTCTCTACCGTGCCGTGACAAACAGCAGGTAGGTGTATTGGTGA
AACGAACCTCGCGGGAAGCGGACAATCAGCCCGGAGTGTTTATCGTTACA
CTGAGTTTTTCGGGTCATCGTCACACGACTCTGTTGTCTGCTGTCTGAGC
TGTATGATCACACCGTAGTTTCGCCGTTCTCCCACCCCGCGGCTCCCAGG
AGGGGGCTCAGGGTGTGTGGCGTTGGCCTTGTTGTGACGTTGGGGCTGGT
GGGGGTCTGACCGAGTGGCGTCACGGCACGAAAGTTAGCGCAATAAAAAA
AAGTCTAGAGCTTGCTGAGCTTGTATGTTTTTCATGTCCGGAGCTTGTTG
CTCTCGTCGCCCTTGTTTGCTGCTGCTGTCCCGTATGACGCGCCCAACTG
CACAGCAGTCGCACACGCGTTGGAATGTGCGGCTGGGTGGCTGGCTCCCT
CCCTACTGCCGCCGCGTCCTATTGATTCGCCGTGCTTGCTTGCTCTGTTG
GCCCCTTCCTCTCACACGCGTGTGTCGCATCTCTGTCTTGGCAGAGAGAT
CCGAGAAAATAGGAGGAGAGCGCATTTAGGGCAGGAGGAGGGCGGGAGGG
CCGCCAAAAACGGAACTCGAGTCATCCATCCATCATGCCCGTAAGGCAGC
GGGAACCCTCCCCTGCTTCTTCTCCTGCCTGCCGGCCGGAGGAGGAGGCG
CCCTTGGCCGCAAGCGAAGGCGGCGGCGGCACCATCGAGATGGAAGAGCC
CAGGACCCCCGTTGGAAGCGGCGGCGGCGATGAACAGCTGGCTGTTGCAA
ATGCCACTGCCGCCGCCGCCGCCCTTCTAGCAGTCGACCGCACTACTGCC
ACCAGTCCTCCGCAGCCGCGGCCCGTCGCCGAGCCCCCTCGGGGCTCGCC
CGAGTCTCCTCGTCCTCCTCCCCCCGCGTTTGGTTCTCCCAGCCCCCATG
CCGCCGCCGACGACGCCGACGGCGACAGCAGCGACTCCACCAGGATCGCC
ACGCGCCTCGCCATCGCCCACAACAACGCCGCCGCCGCCCGCAGGCGTCA
CGCGAGGCTGCTGGACGCCAGGTCCATGAGGAGGAGGAGCACGACCGCGT
TGCTGCCGCCGCCCGGGGTGGGCGTGGAATCTTGCCCGCCCGCTCTTCCG
GCAGTGGCCACCGCCGACATCGACAACGATACTGCCGCCGCCGCCGCTGC
CGGTGGTGCCGCCGGATCCGGCGGCAGTAGTGCCTTTGCCGCCGCGAGCG
ATGGTTGGAGCCGTCGGGTGGGCGAGGCGCGGGCGGCGGCGGCGGCGGCG
GGTGTGGGCGGCGGTGGCATGATGGCGGAGAGCAGCATCACGGACGAGGA
CGACGACATCATCGGCAGTGACACAAGTGGTACCGTGGACTCTTCCGCGG
TACACGCAACGACAAGGAGCGGTGCCGCTGAACACAACAACACTGCCACC
ACCAACGGCAGTGTTGCTACTGCTGCTGCGGTTACTACTAGCCTTGCGGA
GAATGCTCCGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGTGC
GTCGGTCTGGTGGTGCCCACAGGAGGCGAAGCCCCACCAGCACTACCGTC
AGCCCTATCGAAGATGCTCCGACTGCTGGTGTTGCCCGTCGGTCTACCCT
CAGGAGGCGAGGCTCTCCTGTCACTACTACTAGCCTAGTCGTCGAAGATG
CTCCGACTGCTGCTGCTGCTGCTGCTGCTGTCCCTCGGTCTGGTGGTACC
CTGAGGAGGCGAGGCATCTACAGCCCCAGCAGCAGCAGCAGCAGCACGCG
TATCACGGCGGCAGCGGTGGCGGTGGCTGCTGCCACCACCGCTGCCACCA
CCGAAGGAGAAGAGGATTCCGATTTCGGCGGCGCTGCCGCCGCCAACGGG
GATGGCGACGACAACAACGGGGACGCTACTTCTTCTTCCGCTGCTGCTCC
CGGCGGGGCGGGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13979:1286..3398+ >mRNA_E-fasciculatus_F_contig13979.2912.1 ID=mRNA_E-fasciculatus_F_contig13979.2912.1|Name=mRNA_E-fasciculatus_F_contig13979.2912.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1962bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13979:1286..3398+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCGTAAGGCAGCGGGAACCCTCCCCTGCTTCTTCTCCTGCCTGCCG
GCCGGAGGAGGAGGCGCCCTTGGCCGCAAGCGAAGGCGGCGGCGGCACCA
TCGAGATGGAAGAGCCCAGGACCCCCGTTGGAAGCGGCGGCGGCGATGAA
CAGCTGGCTGTTGCAAATGCCACTGCCGCCGCCGCCGCCCTTCTAGCAGT
CGACCGCACTACTGCCACCAGTCCTCCGCAGCCGCGGCCCGTCGCCGAGC
CCCCTCGGGGCTCGCCCGAGTCTCCTCGTCCTCCTCCCCCCGCGTTTGGT
TCTCCCAGCCCCCATGCCGCCGCCGACGACGCCGACGGCGACAGCAGCGA
CTCCACCAGGATCGCCACGCGCCTCGCCATCGCCCACAACAACGCCGCCG
CCGCCCGCAGGCGTCACGCGAGGCTGCTGGACGCCAGGTCCATGAGGAGG
AGGAGCACGACCGCGTTGCTGCCGCCGCCCGGGGTGGGCGTGGAATCTTG
CCCGCCCGCTCTTCCGGCAGTGGCCACCGCCGACATCGACAACGATACTG
CCGCCGCCGCCGCTGCCGGTGGTGCCGCCGGATCCGGCGGCAGTAGTGCC
TTTGCCGCCGCGAGCGATGGTTGGAGCCGTCGGGTGGGCGAGGCGCGGGC
GGCGGCGGCGGCGGCGGGTGTGGGCGGCGGTGGCATGATGGCGGAGAGCA
GCATCACGGACGAGGACGACGACATCATCGGCAGTGACACAAGTGGTACC
GTGGACTCTTCCGCGGTACACGCAACGACAAGGAGCGGTGCCGCTGAACA
CAACAACACTGCCACCACATGCCCGTAAGGCAGCGGGAACCCTCCCCTGC
TTCTTCTCCTGCCTGCCGGCCGGAGGAGGAGGCGCCCTTGGCCGCAAGCG
AAGGCGGCGGCGGCACCATCGAGATGGAAGAGCCCAGGACCCCCGTTGGA
AGCGGCGGCGGCGATGAACAGCTGGCTGTTGCAAATGCCACTGCCGCCGC
CGCCGCCCTTCTAGCAGTCGACCGCACTACTGCCACCAGTCCTCCGCAGC
CGCGGCCCGTCGCCGAGCCCCCTCGGGGCTCGCCCGAGTCTCCTCGTCCT
CCTCCCCCCGCGTTTGGTTCTCCCAGCCCCCATGCCGCCGCCGACGACGC
CGACGGCGACAGCAGCGACTCCACCAGGATCGCCACGCGCCTCGCCATCG
CCCACAACAACGCCGCCGCCGCCCGCAGGCGTCACGCGAGGCTGCTGGAC
GCCAGGTCCATGAGGAGGAGGAGCACGACCGCGTTGCTGCCGCCGCCCGG
GGTGGGCGTGGAATCTTGCCCGCCCGCTCTTCCGGCAGTGGCCACCGCCG
ACATCGACAACGATACTGCCGCCGCCGCCGCTGCCGGTGGTGCCGCCGGA
TCCGGCGGCAGTAGTGCCTTTGCCGCCGCGAGCGATGGTTGGAGCCGTCG
GGTGGGCGAGGCGCGGGCGGCGGCGGCGGCGGCGGGTGTGGGCGGCGGTG
GCATGATGGCGGAGAGCAGCATCACGGACGAGGACGACGACATCATCGGC
AGTGACACAAGTGGTACCGTGGACTCTTCCGCGGTACACGCAACGACAAG
GAGCGGTGCCGCTGAACACAACAACACTGCCACCACCTGCTGCTGCTGCT
GCTGCTGCTACTGTGCGTCGGTCTGGTGGTGCCCACAGGAGGCGAAGCCC
CACCAGCACTACCGTCAGCCCTATCGAAGATGCTCCGACTGCTGGTGTTG
CCCGTCGGTCTACCCTCAGGAGGCGAGGCTCTCCTGTCACTACTACTAGC
TGCTGCTGCTGCTGCTGCTGCTACTGTGCGTCGGTCTGGTGGTGCCCACA
GGAGGCGAAGCCCCACCAGCACTACCGTCAGCCCTATCGAAGATGCTCCG
ACTGCTGGTGTTGCCCGTCGGTCTACCCTCAGGAGGCGAGGCTCTCCTGT
CACTACTACTAG back to top
|