mRNA_E-fasciculatus_F_contig13975.2910.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13975.2910.1
Unique NamemRNA_E-fasciculatus_F_contig13975.2910.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.270e-28
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQLAKVDRRGSPVSSS 174
            EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ AK  RRGSPVSSS
Sbjct:   97 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ-AKPVRRGSPVSSS 153
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.730e-24
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQL 135
            EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ+
Sbjct:  138 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQV 182
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: UPI000C76FFC0 (integrator complex subunit 1-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76FFC0)

HSP 1 Score: 55.8 bits (133), Expect = 2.950e-7
Identity = 24/52 (46.15%), Postives = 30/52 (57.69%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQLAKVDRRG 156
            EWP   + +YM DA+G R W  H  CKPFVDN+ TA+    P Q+   D  G
Sbjct:  186 EWPEVFVRVYMDDAIGERVWVDHPECKPFVDNILTAFNTVLPAQVKGGDGGG 237
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: A0A7J7BSJ9_9COLE (Protein aurora borealis n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7BSJ9_9COLE)

HSP 1 Score: 53.9 bits (128), Expect = 1.420e-6
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQL 135
            +WP A + +Y+ DALG R W  +  CKPFVDN+ TA+    PP++
Sbjct:  664 QWPEAFVKLYVEDALGDRTWIDNPYCKPFVDNIITAFNTKQPPKV 708
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: A0A8K0C6N1_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0C6N1_9COLE)

HSP 1 Score: 53.5 bits (127), Expect = 1.930e-6
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQL 135
            +WP A + +Y+ DALG R W  +  CKPFVDN+ TA+    PP++
Sbjct:  231 QWPEAFVKLYVEDALGDRVWIDNPYCKPFVDNIVTAFNTKQPPKV 275
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: UPI000C207F93 (integrator complex subunit 1 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C207F93)

HSP 1 Score: 53.1 bits (126), Expect = 2.640e-6
Identity = 22/60 (36.67%), Postives = 32/60 (53.33%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQLAKVDRRGSPVSSSES 180
             WP + + +Y+ DA+G R W  +  CKPFVDN+ TA+    PP+L       +P     S
Sbjct:  218 HWPESFVKLYVEDAVGDRVWIDNPFCKPFVDNISTAFNTKQPPKLLLATETWAPAGRDTS 277
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: A0A0T6AW20_9SCAR (DUF3677 domain-containing protein n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6AW20_9SCAR)

HSP 1 Score: 52.8 bits (125), Expect = 3.620e-6
Identity = 21/60 (35.00%), Postives = 32/60 (53.33%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQLAKVDRRGSPVSSSES 180
             WP   + +Y+ DA+G R W  +  CKPFV+N++TA+    PP+L       +P     S
Sbjct:  230 HWPEIFVKLYVEDAVGDRVWIDNPFCKPFVENIKTAFGTKQPPKLLLATETWAPTGRDTS 289
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: A0A5N4AD27_PHOPY (DUF3677 domain-containing protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AD27_PHOPY)

HSP 1 Score: 50.8 bits (120), Expect = 1.730e-5
Identity = 19/45 (42.22%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQL 135
            +WP   + +Y+ DALG R W  +  CKPFV+N+ TA+    PP++
Sbjct:  228 QWPDVFVKLYVEDALGDRTWIDNPYCKPFVENIVTAFNTKQPPKV 272
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: UPI001D091156 (integrator complex subunit 1 n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D091156)

HSP 1 Score: 50.4 bits (119), Expect = 2.370e-5
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 132
             WP + + I++ DALG R W  +  CKPFVDN+ TA++   PP+
Sbjct:  220 HWPESFVRIFVEDALGDRIWIDNPYCKPFVDNIITAFSTKLPPK 263
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BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Match: UPI001E275D71 (integrator complex subunit 1 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E275D71)

HSP 1 Score: 49.3 bits (116), Expect = 6.050e-5
Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:    1 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 132
             WP   + I++ DALG R W  +  CKPFVDN+ TA+    PP+
Sbjct:  223 SWPEVFVKIFVEDALGDRIWIDNPYCKPFVDNIITAFNTKLPPK 266
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13975.2910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L4I3_9PHAE2.270e-2894.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPC4_ECTSI4.730e-2497.78Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus ... [more]
UPI000C76FFC02.950e-746.15integrator complex subunit 1-like n=1 Tax=Eurytemo... [more]
A0A7J7BSJ9_9COLE1.420e-646.67Protein aurora borealis n=1 Tax=Abscondita termina... [more]
A0A8K0C6N1_9COLE1.930e-646.67Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
UPI000C207F932.640e-636.67integrator complex subunit 1 n=1 Tax=Onthophagus t... [more]
A0A0T6AW20_9SCAR3.620e-635.00DUF3677 domain-containing protein n=1 Tax=Oryctes ... [more]
A0A5N4AD27_PHOPY1.730e-542.22DUF3677 domain-containing protein n=2 Tax=Photinus... [more]
UPI001D0911562.370e-545.45integrator complex subunit 1 n=1 Tax=Coccinella se... [more]
UPI001E275D716.050e-545.45integrator complex subunit 1 n=1 Tax=Harmonia axyr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13975contigE-fasciculatus_F_contig13975:33..263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog2880.D7FPC4
Preferred nameINTS1
KEGG koko:K03178,ko:K13138
KEGG Pathwayko04120,ko05012,map04120,map05012
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsCOG0476@1,KOG2012@2759,KOG4596@1,KOG4596@2759
EC6.2.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927887.8120034-UTR-E-fasciculatus_F_contig13975:32..621622927887.8120034-UTR-E-fasciculatus_F_contig13975:32..62Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13975 33..62 +
1695995739.236884-UTR-E-fasciculatus_F_contig13975:32..621695995739.236884-UTR-E-fasciculatus_F_contig13975:32..62Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13975 33..62 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927887.8229313-CDS-E-fasciculatus_F_contig13975:62..2631622927887.8229313-CDS-E-fasciculatus_F_contig13975:62..263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13975 63..263 +
1695995739.2472727-CDS-E-fasciculatus_F_contig13975:62..2631695995739.2472727-CDS-E-fasciculatus_F_contig13975:62..263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13975 63..263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13975.2910.1prot_E-fasciculatus_F_contig13975.2910.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13975 63..263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13975.2910.1

>prot_E-fasciculatus_F_contig13975.2910.1 ID=prot_E-fasciculatus_F_contig13975.2910.1|Name=mRNA_E-fasciculatus_F_contig13975.2910.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp
MHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQLAKVDRRGSPVSSSES
GAAGGSGGSATTAAAAP
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mRNA from alignment at E-fasciculatus_F_contig13975:33..263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13975.2910.1 ID=mRNA_E-fasciculatus_F_contig13975.2910.1|Name=mRNA_E-fasciculatus_F_contig13975.2910.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=231bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13975:33..263+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGTGGCCCATAGCCCTGCTAGACATCTACATGCACGACGCGCTGGGAGG
GAGGCAGTGGGCCTCCCACTCCGCCTGCAAGCCGTTCGTGGACAACGTCC
GCACGGCGTGGGCGCCCCCGACGCCGCCTCAGCTTGCCAAGGTCGACCGC
CGCGGGTCGCCGGTCTCGTCTTCCGAATCGGGCGCCGCCGGCGGTAGCGG
TGGTTCCGCGACAACCGCAGCGGCCGCTCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13975:33..263+

>mRNA_E-fasciculatus_F_contig13975.2910.1 ID=mRNA_E-fasciculatus_F_contig13975.2910.1|Name=mRNA_E-fasciculatus_F_contig13975.2910.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13975:33..263+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACGACGCGCTGGGAGGGAGGCAGTGGGCCTCCCACTCCGCCTGCAA
GCCGTTCGTGGACAACGTCCGCACGGCGTGGGCGCCCCCGACGCCGCCTC
AGCTTGCCAAGGTCGACCGCCGCGGGTCGCCGGTCTCGTCTTCCGAATCG
GGCGCCGCCGGCGGTAGCGGTGGTTCCGCGACAACCGCAGCGGCCGCTCC
CATGCACGACGCGCTGGGAGGGAGGCAGTGGGCCTCCCACTCCGCCTGCA
AGCCGTTCGTGGACAACGTCCGCACGGCGTGGGCGCCCCCGACGCCGCCT
CAGCTTGCCAAGGTCGACCGCCGCGGGTCGCCGGTCTCGTCTTCCGAATC
GGGCGCCGCCGGCGGTAGCGGTGGTTCCGCGACAACCGCAGCGGCCGCTC
CC
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