mRNA_E-fasciculatus_F_contig13967.2906.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13967.2906.1
Unique NamemRNA_E-fasciculatus_F_contig13967.2906.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13967.2906.1 vs. uniprot
Match: D7FN61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN61_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 7.950e-89
Identity = 167/181 (92.27%), Postives = 169/181 (93.37%), Query Frame = 1 
Query:  244 MSTRCVTDFDVTYGSALAPAGFHRITTRVGGSANLNTTASSQQSFLWTHEGLSRGNPVVQIRVTYDDEPGPEGFERVSRDLAKGGTSGRKAFLWLKRHAQQIPRTASATALDQRRXXXXXXXXXXXXXXXXXX------EGDGGILPIGEVVVAFGSSDPNVEEATETVEQERAAGVVDGA 768
            MSTRCVTDFDVTYGSALAPAGFHR TTRVGGSANLNTTASSQQSFLWTHEGLSRGNPVVQ+ VTYDDEPGPEGFERVSRDLAKGGTSGRKAFLWLKRHAQQIPRTASATALDQRRXXXXXXXXXXXXXXXXXX      EGD G+LPIGEVVVAFGSSDPNVEEATE  EQERAAG VDGA
Sbjct:    1 MSTRCVTDFDVTYGSALAPAGFHRTTTRVGGSANLNTTASSQQSFLWTHEGLSRGNPVVQVSVTYDDEPGPEGFERVSRDLAKGGTSGRKAFLWLKRHAQQIPRTASATALDQRRXXXXXXXXXXXXXXXXXXXXXXXEEGDSGVLPIGEVVVAFGSSDPNVEEATEAAEQERAAGAVDGA 181
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BLAST of mRNA_E-fasciculatus_F_contig13967.2906.1 vs. uniprot
Match: A0A4D9CLS1_9STRA (USP domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLS1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 7.530e-19
Identity = 50/112 (44.64%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:  259 VTDFDVTYGSALAPAGFHRITTRVGGSANLNTTASSQ---QSFLWTHEGLSRGNPVVQIRVTYDDEPGPEGFERVSRDLAKGGTSGRKAFLWLKRHAQQIPRTASATALDQR 585
            + DFDVTYG ALAPAGF R TT     A+++  A+     ++FLW H+GL+RG P+V + V Y+DEP P+GF +V+RD++KG  S +++FL  +R A+  P+ + A  +  R
Sbjct:    3 IRDFDVTYGDALAPAGFSRATTPAKDCADISAGATGSGAGRTFLWYHKGLNRGEPIVAVDVIYEDEPVPQGFVKVARDMSKG--SHQRSFLCFRR-ARSPPQESGAEGIADR 111
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BLAST of mRNA_E-fasciculatus_F_contig13967.2906.1 vs. uniprot
Match: A0A836CI44_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI44_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.870e-16
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:  259 VTDFDVTYGSALAPAGFHRITTRVGGSANLNTTASSQ----QSFLWTHEGLSRGNPVVQIRVTYDDEPGPEGFERVSRDLAKGGTSGRKAFLWLKRHA 540
            +T FDVT+GSALA AG+HR T   GG+AN+N +   Q    QSFLW  +  S+  PVV ++V YDDEP P G+E+V R +    +  R + L LKR A
Sbjct:    1 ITGFDVTFGSALAAAGYHRTTLHDGGTANINRSNDKQGVSSQSFLWYCDVPSKLGPVVDVQVLYDDEPTPPGWEKVPRSMVV--SDKRSSHLCLKRAA 96
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BLAST of mRNA_E-fasciculatus_F_contig13967.2906.1 vs. uniprot
Match: A0A813CFD0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CFD0_9DINO)

HSP 1 Score: 72.8 bits (177), Expect = 1.820e-11
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:  259 VTDFDVTYGSALAPAGFHRITTRVGGSANLNTTASSQQSFLWTHEGLSRGNPVVQIRVTYDDEPGPEGFERVSRDLAKGGTSGRKAFLWLKR 534
            ++D  VTYGSALAPA +HRI T  G  A++N   +    +LW+ +  ++   +V I V YD E  PEGFE+VS+ L KG    R+A++ +K+
Sbjct:    4 ISDITVTYGSALAPAKYHRIVTLEGHGADVNK-GNGPPVYLWSKDRTNKEPAIVDISVIYDGEDVPEGFEKVSKTLLKG--VDRQAYICVKK 92
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13967.2906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FN61_ECTSI7.950e-8992.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CLS1_9STRA7.530e-1944.64USP domain-containing protein n=5 Tax=Monodopsidac... [more]
A0A836CI44_9STRA2.870e-1647.96Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A813CFD0_9DINO1.820e-1142.39Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13967contigE-fasciculatus_F_contig13967:83..2314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size769
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13967.2906.1prot_E-fasciculatus_F_contig13967.2906.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13967 83..2314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927887.3227348-CDS-E-fasciculatus_F_contig13967:82..4271622927887.3227348-CDS-E-fasciculatus_F_contig13967:82..427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13967 83..427 -
1695995739.004416-CDS-E-fasciculatus_F_contig13967:82..4271695995739.004416-CDS-E-fasciculatus_F_contig13967:82..427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13967 83..427 -
1622927887.3347964-CDS-E-fasciculatus_F_contig13967:1638..17581622927887.3347964-CDS-E-fasciculatus_F_contig13967:1638..1758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13967 1639..1758 -
1695995739.013886-CDS-E-fasciculatus_F_contig13967:1638..17581695995739.013886-CDS-E-fasciculatus_F_contig13967:1638..1758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13967 1639..1758 -
1622927887.3516872-CDS-E-fasciculatus_F_contig13967:2011..23141622927887.3516872-CDS-E-fasciculatus_F_contig13967:2011..2314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13967 2012..2314 -
1695995739.0239227-CDS-E-fasciculatus_F_contig13967:2011..23141695995739.0239227-CDS-E-fasciculatus_F_contig13967:2011..2314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13967 2012..2314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13967.2906.1

>prot_E-fasciculatus_F_contig13967.2906.1 ID=prot_E-fasciculatus_F_contig13967.2906.1|Name=mRNA_E-fasciculatus_F_contig13967.2906.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=256bp
MLPAPSCSLCLLCVCVCANARVEPGGGRAPAYRHDSMTGYTNSSPPRCRV
LHFASPPRWALRAPSKSKARYPDARPACCVEMSTRCVTDFDVTYGSALAP
AGFHRITTRVGGSANLNTTASSQQSFLWTHEGLSRGNPVVQIRVTYDDEP
GPEGFERVSRDLAKGGTSGRKAFLWLKRHAQQIPRTASATALDQRRRSSN
GTKEHEEAAAASQEEGDGGILPIGEVVVAFGSSDPNVEEATETVEQERAA
GVVDGA
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mRNA from alignment at E-fasciculatus_F_contig13967:83..2314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13967.2906.1 ID=mRNA_E-fasciculatus_F_contig13967.2906.1|Name=mRNA_E-fasciculatus_F_contig13967.2906.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2232bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13967:83..2314- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCCTGCGCCGTCTTGCTCTCTCTGTCTTCTCTGTGTGTGTGTGTG
TGCCAACGCCAGAGTTGAACCCGGGGGGGGGCGCGCACCGGCATACCGGC
ATGACAGCATGACAGGCTACACTAATTCGTCACCCCCTAGATGTAGAGTG
CTGCATTTTGCGTCACCCCCTAGATGGGCATTGCGTGCTCCAAGCAAGTC
AAAGGCAAGGTACCCGGATGCCCGTCCCGCTTGCTGCGTCGAGATGTCGA
CGAGATGTGTCACAGACTTCGACGTGACTTACGGAAGTGCCCTGGCACCT
GCGGTAAGTGTGGCGCGGCCGGTTCGCTGCTGCATCTTCAAGTGCTTTTG
CGAATTTCGACAGCACACGCAATTATAAAGCATCTTGTTCGCTCGCTGTC
TCTAAACCTGGTTCGTGCTCTGTTCTTGCTATCAAACACGAAAGCATGCG
GCGGCGCGTGTGTCTCACGCTCACCTCAACCGTGTTGTTTGGCCATGTGC
CGTGGCTGCTGCTATCGATCCTGCTGAGCATGCCTGTTCTGCTTGCTCTT
TCGCAGGGATTTCATCGAATCACAACTCGGGTAGGCGGCAGTGCAAACCT
CAACACGACCGCGAGCTCGCAGCAGAGCTTCTTGTGGACGCATGAGGGAC
TCAGCAGGGGCAATCCCGTCGTGCAGGTGGGTCAGGGGATATCGACATGT
ACGCCCTTGTTGAAGATGCTGGCTAGGATCAAAACTCTTGATGATTTGCG
TACAAGTGACTCGGCCGGGCTGCTCTATCCTTTTGTACGATCGGATAATC
AATCGTCCTTCATGACAGGGATGGACAGGCGGCGCAATTGTGAGATTGCG
GGAGGGAGGTGGCCTTCGTCATTTGTCATGTGCGAACACGACAAACACGG
AAACAAAGTGCAATATAGGGACACATACCCGACACGCCCACCCATGGAGA
TACACGAACTTGCTATGATGTGACCATTCATCTTTGTCGAGAGCCACAAC
GTCAGGCAGTGTGTGTACATGGACGATCGGGGCGTGGGCAGGAGGTCTCT
TGAAGCCACGCTGGTGCAAAAATTGTTGACGTGCGAGAGGGTCGAATGCA
CACGGGCATACATTAGAGATCGCACACGGTACATGTAGGACCGAATCGCG
TATGATGCTATTGTACGCAGTACGACGCGGAAAGATCCACATCTTCCATC
ACCGTCCACCACAGAGCACCGCTAGTTACCCGCCGCGCGAGCACGCGCCT
GTGTTTCGAGAACGCGACCCTAAAATAGTTGATCCCCTACACACCCCGAA
GTCTGTGGTACCGTTTAGTCCGCAGTATATACTACTTTTGAGCCCCACAT
CTTGTTACCTGTGTAATAGATACCTGTATCAGCATTTGCGCACCGCAGTG
AACTCTTTGTACGGATGATTGTCATACTCGCTCACCTGGAGCCACGAACG
AATGCGGACATGGTGGCTGAGTGCAAGGAGGCCAAGGGCCTATGCATACT
GCTGTAGCTCCGCGAACCGGTCAATCGTTATCTCGTACAAATAGATACCC
TTGTGTATGTTGCCAGGCACCCACGACGTAGAAGCACCGAAATTGTCTAC
GCTGGATTGAAATCAAGCAACTCGACGCTGTCGTCCGCCCTTGTAAAGCA
CGTGGTGCCCCAAGTCCGCCTCCCGGAGCAATTAATGCTGGCAACATGCT
GCAAAACACCTACCTTTTTGCGCGACACGGTGAACACCTGATAGCGGTTT
CGCGATGCGAGGCCAACCTCACGGGCCAAAAGAACAAAAAAACCGACGAC
GATACTCGGTGCATGCACCTCGTGGCAACGTTTTGTCGGCCTTGTTTGCC
CCCTCTACGTCTCAACAACACGAAATGTTCTTTCAAGATACGCGTGACCT
ACGACGATGAGCCGGGACCGGAGGGTTTCGAACGGGTGTCGCGGGACCTC
GCGAAGGGCGGCACCAGCGGAAGGAAGGCCTTCCTCTGGCTCAAGCGCCA
CGCCCAGCAGATACCCAGGACCGCCAGCGCCACGGCTCTCGACCAACGGA
GACGCAGCTCTAACGGCACGAAAGAACATGAAGAAGCAGCAGCAGCATCA
CAAGAAGAAGGGGATGGCGGCATCCTGCCGATCGGCGAAGTTGTTGTGGC
GTTCGGGTCCTCTGACCCAAATGTCGAAGAGGCGACGGAAACGGTGGAGC
AAGAGCGCGCGGCGGGGGTGGTCGACGGCGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13967:83..2314-

>mRNA_E-fasciculatus_F_contig13967.2906.1 ID=mRNA_E-fasciculatus_F_contig13967.2906.1|Name=mRNA_E-fasciculatus_F_contig13967.2906.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1536bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13967:83..2314- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCCTGCGCCGTCTTGCTCTCTCTGTCTTCTCTGTGTGTGTGTGTG
TGCCAACGCCAGAGTTGAACCCGGGGGGGGGCGCGCACCGGCATACCGGC
ATGACAGCATGACAGGCTACACTAATTCGTCACCCCCTAGATGTAGAGTG
CTGCATTTTGCGTCACCCCCTAGATGGGCATTGCGTGCTCCAAGCAAGTC
AAAGGCAAGGTACCCGGATGCCCGTCCCGCTTGCTGCGTCGAGATGTCGA
CGAGATGTGTCACAGACTTCGACGTGACTTACGGAAGTGCCCTGGCACCT
GCGATGCTGCCTGCGCCGTCTTGCTCTCTCTGTCTTCTCTGTGTGTGTGT
GTGTGCCAACGCCAGAGTTGAACCCGGGGGGGGGCGCGCACCGGCATACC
GGCATGACAGCATGACAGGCTACACTAATTCGTCACCCCCTAGATGTAGA
GTGCTGCATTTTGCGTCACCCCCTAGATGGGCATTGCGTGCTCCAAGCAA
GTCAAAGGCAAGGTACCCGGATGCCCGTCCCGCTTGCTGCGTCGAGATGT
CGACGAGATGTGTCACAGACTTCGACGTGACTTACGGAAGTGCCCTGGCA
CCTGCGGGATTTCATCGAATCACAACTCGGGTAGGCGGCAGTGCAAACCT
CAACACGACCGCGAGCTCGCAGCAGAGCTTCTTGTGGACGCATGAGGGAC
TCAGCAGGGGCAATCCCGTCGTGCAGGGATTTCATCGAATCACAACTCGG
GTAGGCGGCAGTGCAAACCTCAACACGACCGCGAGCTCGCAGCAGAGCTT
CTTGTGGACGCATGAGGGACTCAGCAGGGGCAATCCCGTCGTGCAGATAC
GCGTGACCTACGACGATGAGCCGGGACCGGAGGGTTTCGAACGGGTGTCG
CGGGACCTCGCGAAGGGCGGCACCAGCGGAAGGAAGGCCTTCCTCTGGCT
CAAGCGCCACGCCCAGCAGATACCCAGGACCGCCAGCGCCACGGCTCTCG
ACCAACGGAGACGCAGCTCTAACGGCACGAAAGAACATGAAGAAGCAGCA
GCAGCATCACAAGAAGAAGGGGATGGCGGCATCCTGCCGATCGGCGAAGT
TGTTGTGGCGTTCGGGTCCTCTGACCCAAATGTCGAAGAGGCGACGGAAA
CGGTGGAGCAAGAGCGCGCGGCGGGGGTGGTCGACGGCGCGATACGCGTG
ACCTACGACGATGAGCCGGGACCGGAGGGTTTCGAACGGGTGTCGCGGGA
CCTCGCGAAGGGCGGCACCAGCGGAAGGAAGGCCTTCCTCTGGCTCAAGC
GCCACGCCCAGCAGATACCCAGGACCGCCAGCGCCACGGCTCTCGACCAA
CGGAGACGCAGCTCTAACGGCACGAAAGAACATGAAGAAGCAGCAGCAGC
ATCACAAGAAGAAGGGGATGGCGGCATCCTGCCGATCGGCGAAGTTGTTG
TGGCGTTCGGGTCCTCTGACCCAAATGTCGAAGAGGCGACGGAAACGGTG
GAGCAAGAGCGCGCGGCGGGGGTGGTCGACGGCGCG
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