mRNA_E-fasciculatus_F_contig1396.2902.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1396.2902.1
Unique NamemRNA_E-fasciculatus_F_contig1396.2902.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1396.2902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1396contigE-fasciculatus_F_contig1396:13531..14042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size512
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1396.2902.1prot_E-fasciculatus_F_contig1396.2902.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1396 13623..13943 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927886.524533-UTR-E-fasciculatus_F_contig1396:13530..136221622927886.524533-UTR-E-fasciculatus_F_contig1396:13530..13622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1396 13531..13622 +
1695995738.6114676-UTR-E-fasciculatus_F_contig1396:13530..136221695995738.6114676-UTR-E-fasciculatus_F_contig1396:13530..13622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1396 13531..13622 +
1622927886.5585418-UTR-E-fasciculatus_F_contig1396:13943..140421622927886.5585418-UTR-E-fasciculatus_F_contig1396:13943..14042Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1396 13944..14042 +
1695995738.6310759-UTR-E-fasciculatus_F_contig1396:13943..140421695995738.6310759-UTR-E-fasciculatus_F_contig1396:13943..14042Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1396 13944..14042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927886.539873-CDS-E-fasciculatus_F_contig1396:13622..139431622927886.539873-CDS-E-fasciculatus_F_contig1396:13622..13943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1396 13623..13943 +
1695995738.6206968-CDS-E-fasciculatus_F_contig1396:13622..139431695995738.6206968-CDS-E-fasciculatus_F_contig1396:13622..13943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1396 13623..13943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1396.2902.1

>prot_E-fasciculatus_F_contig1396.2902.1 ID=prot_E-fasciculatus_F_contig1396.2902.1|Name=mRNA_E-fasciculatus_F_contig1396.2902.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
MYLGRATEYSGAVFVFIWRSQRTVLSEKTHACSSPRRTHTTPSKPKTRTC
KLYSKPERKSVSCFTFPCLHWSSSSPSYVTTYLTHPLYSLRLALQSPMVC
GQYPGM*
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mRNA from alignment at E-fasciculatus_F_contig1396:13531..14042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1396.2902.1 ID=mRNA_E-fasciculatus_F_contig1396.2902.1|Name=mRNA_E-fasciculatus_F_contig1396.2902.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=512bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1396:13531..14042+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGGGGCGACGGAGGGGGGGGGGTTAGTTACGAGCCGTGTGGTACCTTA
CTTGTCGCTTCTGTTCAAAATAATGCGTTTAGTGCTACTTTGATGTACCT
AGGCCGTGCAACAGAGTACTCGGGTGCGGTGTTTGTTTTCATTTGGCGTT
CTCAACGCACCGTACTCTCCGAGAAAACGCATGCTTGTAGTTCGCCGAGG
AGAACACACACTACGCCTTCGAAGCCTAAAACACGCACGTGCAAGTTATA
TTCGAAACCCGAAAGAAAGTCAGTTTCCTGCTTCACCTTCCCTTGTCTAC
ATTGGTCATCGTCATCTCCCTCGTACGTCACCACCTACTTGACACACCCG
CTTTATTCCTTACGCCTTGCCCTACAAAGTCCCATGGTCTGCGGACAATA
TCCAGGTATGTAGCAAATCACCATCAGAGAAAAAGGGAGGGGGGGAGCCG
GCCTTTCGTTCTTACCTTGACCTGCAACGGAGGGGCGTGGCCACGCCGTC
TTCTTGTTGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1396:13531..14042+

>mRNA_E-fasciculatus_F_contig1396.2902.1 ID=mRNA_E-fasciculatus_F_contig1396.2902.1|Name=mRNA_E-fasciculatus_F_contig1396.2902.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1396:13531..14042+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACCTAGGCCGTGCAACAGAGTACTCGGGTGCGGTGTTTGTTTTCAT
TTGGCGTTCTCAACGCACCGTACTCTCCGAGAAAACGCATGCTTGTAGTT
CGCCGAGGAGAACACACACTACGCCTTCGAAGCCTAAAACACGCACGTGC
AAGTTATATTCGAAACCCGAAAGAAAGTCAGTTTCCTGCTTCACCTTCCC
TTGTCTACATTGGTCATCGTCATCTCCCTCGTACGTCACCACCTACTTGA
CACACCCGCTTTATTCCTTACGCCTTGCCCTACAAAGTCCCATGGTCTGC
GGACAATATCCAGGTATGTAGATGTACCTAGGCCGTGCAACAGAGTACTC
GGGTGCGGTGTTTGTTTTCATTTGGCGTTCTCAACGCACCGTACTCTCCG
AGAAAACGCATGCTTGTAGTTCGCCGAGGAGAACACACACTACGCCTTCG
AAGCCTAAAACACGCACGTGCAAGTTATATTCGAAACCCGAAAGAAAGTC
AGTTTCCTGCTTCACCTTCCCTTGTCTACATTGGTCATCGTCATCTCCCT
CGTACGTCACCACCTACTTGACACACCCGCTTTATTCCTTACGCCTTGCC
CTACAAAGTCCCATGGTCTGCGGACAATATCCAGGTATGTAG
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