mRNA_E-fasciculatus_F_contig13958.2899.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13958.2899.1
Unique NamemRNA_E-fasciculatus_F_contig13958.2899.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13958.2899.1 vs. uniprot
Match: A0A6H5L027_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L027_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.550e-56
Identity = 253/387 (65.37%), Postives = 257/387 (66.41%), Query Frame = 1 
Query:    1 MSAHGAPMVGSTPGLGQPSASPIPPQSSMHYAQHPSAGGYPQSAGYGGGGPQPSLSTSAYGASRSPSGXXXXXXXXXXXXXXXXXXA---------PPGSGSGXXXXXXXXXXXXXXXXXASYGGPQAATAGRYNTPXXXXXXXXXXXXXXXXXXXXSSRIAAAAPPXXAPAGYGXXXXXXXXXXXGGSHPASSSAYGSGGGLGAGAGAPQRNPNAVYYGPAAGSSGAAPLXXXXXXXXXXFSGGGYSRVGAPPAPAMSLKWGTPAAAPAAAAXXXTAAQYPTFGGPAAAQYSASTATPYHAPSAXXXXXXXPAXAPAPAAASYSNGSSPYSNGGGGGSTXXXXXXXXXXXSGGGGXXXXXXARPVPLPPGWEEKTASDGRTFFVDH 1134
            MS HGAPMVGSTPGLGQPS+S IPPQSSMHY QH SAGGY QS GYGG  PQPSLSTSAYGASR PS XXXXXXXXXXXXXXXXXX          PP S   XXXXXXXXXXXXXXX            AGRYN   XXXXXXXXXXXXXXXXXXX SR+ AA      PA   XXXXXXXXXXX  +                 AGAPQRNPNAVYYGPAAGS          XXXXX FSGG Y R GAPP PAMSLKWGTPAAAPAAA XXX   QY TFGG          ATPYHAP A       PA APAPAA  YSNGSSP          XXXXXXXXXX  GG G      ARP+PLPPGWEEK ASDGRTFFVDH
Sbjct:  134 MSTHGAPMVGSTPGLGQPSSSLIPPQSSMHYPQHQSAGGYSQSTGYGGRAPQPSLSTSAYGASRPPSXXXXXXXXXXXXXXXXXXXXXXXXXXSSRPPSSSXXXXXXXXXXXXXXXXX-----------AAGRYNX--XXXXXXXXXXXXXXXXXXXGSRVGAA------PAXXXXXXXXXXXXXXXXA-----------------AGAPQRNPNAVYYGPAAGSX---------XXXXXGFSGGSY-RAGAPPTPAMSLKWGTPAAAPAAAXXXX---QYSTFGGXXXXXXXXXXATPYHAPLAPSAPSAPPATAPAPAAG-YSNGSSPXXXXXXXXXXXXXXXXXXXXSGGGXGG-----ARPLPLPPGWEEKVASDGRTFFVDH 465
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BLAST of mRNA_E-fasciculatus_F_contig13958.2899.1 vs. uniprot
Match: D7G0H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H2_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.600e-47
Identity = 231/388 (59.54%), Postives = 236/388 (60.82%), Query Frame = 1 
Query:    1 MSAHGAPMVGSTPGLGQPSASPIPPQSSMHYAQHPSAGGYPQSAGYGGGGPQPSLSTSAYGASRSPSGXXXXXXXXXXXXXXXXXXA---------PPGSGSGXXXXXXXXXXXXXXXXXASYGGPQAATAGRYNTPXXXXXXXXXXXXXXXXXXXXSSRIAAAAPPXXAPAGYGXXXXXXXXXXXGGSHPASSSAYGSGGGLGAGAGAPQRNPNAVYYGPAAGSSGAAPLXXXXXXXXXXFSGGGYSRVGAPPAPAMSLKWGTPAAAPAAAAXXXTAAQYPTFGGPAAAQYSASTATPYHAPSAXXXXXXXPAXAPAPAAASYSNGSSPYSNGGGGGSTXXXXXXXXXXXSGGGGXXXXXXARPVPLPPGWEEKTASDGRTFFVDHK 1137
            MS HGAPMVGSTPGLGQPSASPIPPQSSMHY QHPSAGGYPQS GYGGG PQPSLSTSAYGASRSPS XXXXXXXXXXXXXXXXXX          PP S   XXXXXXXXXXXXXXX    Y  PQA  +                 XXXXXXXXX SR+AAA  P  +PAGYG             + P  S                                     XXXXXXXX  FSGG Y R GAPP PAMSLKWGTPAAAPAAA       QY TFGGP AAQ SASTA PYHAPS XXXXXXX  X                         XXXXXXXXXX SG GGXXXX  ARP+PLPPGWEEK ASDGRTFFVDHK
Sbjct:  134 MSTHGAPMVGSTPGLGQPSASPIPPQSSMHYPQHPSAGGYPQSTGYGGGAPQPSLSTSAYGASRSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPPSSSXXXXXXXXXXXXXXXXXAAGWYSNPQAPPSA------------YGGAXXXXXXXXXXSRVAAA--PAPSPAGYGA------------AQPPXSGXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSGGSY-RAGAPPTPAMSLKWGTPAAAPAAA-------QYSTFGGPEAAQSSASTAAPYHAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXXASGSGGXXXX--ARPLPLPPGWEEKVASDGRTFFVDHK 470
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13958.2899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L027_9PHAE1.550e-5665.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0H2_ECTSI1.600e-4759.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13958contigE-fasciculatus_F_contig13958:1151..3433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-19_003310.1
Exons4
Model size1140
Cds size1140
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13958.2899.1prot_E-fasciculatus_F_contig13958.2899.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13958 1151..3433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927886.426724-CDS-E-fasciculatus_F_contig13958:1150..12151622927886.426724-CDS-E-fasciculatus_F_contig13958:1150..1215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13958 1151..1215 -
1695995738.5731778-CDS-E-fasciculatus_F_contig13958:1150..12151695995738.5731778-CDS-E-fasciculatus_F_contig13958:1150..1215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13958 1151..1215 -
1622927886.4381416-CDS-E-fasciculatus_F_contig13958:1497..18511622927886.4381416-CDS-E-fasciculatus_F_contig13958:1497..1851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13958 1498..1851 -
1695995738.58276-CDS-E-fasciculatus_F_contig13958:1497..18511695995738.58276-CDS-E-fasciculatus_F_contig13958:1497..1851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13958 1498..1851 -
1622927886.4636462-CDS-E-fasciculatus_F_contig13958:2254..29241622927886.4636462-CDS-E-fasciculatus_F_contig13958:2254..2924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13958 2255..2924 -
1695995738.591619-CDS-E-fasciculatus_F_contig13958:2254..29241695995738.591619-CDS-E-fasciculatus_F_contig13958:2254..2924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13958 2255..2924 -
1622927886.4849505-CDS-E-fasciculatus_F_contig13958:3382..34331622927886.4849505-CDS-E-fasciculatus_F_contig13958:3382..3433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13958 3383..3433 -
1695995738.6022446-CDS-E-fasciculatus_F_contig13958:3382..34331695995738.6022446-CDS-E-fasciculatus_F_contig13958:3382..3433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13958 3383..3433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13958.2899.1

>prot_E-fasciculatus_F_contig13958.2899.1 ID=prot_E-fasciculatus_F_contig13958.2899.1|Name=mRNA_E-fasciculatus_F_contig13958.2899.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=380bp
MSAHGAPMVGSTPGLGQPSASPIPPQSSMHYAQHPSAGGYPQSAGYGGGG
PQPSLSTSAYGASRSPSGYGGGGGAPQPSLSTSMYGAPPGSGSGYGGPRP
SSSSYGAPQPGASYGGPQAATAGRYNTPQVPPASAYGGAPQAPPAAYGSS
RIAAAAPPAAAPAGYGAVQPPASATYGGGSHPASSSAYGSGGGLGAGAGA
PQRNPNAVYYGPAAGSSGAAPLPGGGGGGGAGFSGGGYSRVGAPPAPAMS
LKWGTPAAAPAAAAAAPTAAQYPTFGGPAAAQYSASTATPYHAPSAPSAP
SAPPAPAPAPAAASYSNGSSPYSNGGGGGSTYGNGSNPYTNGSGGGGGGG
GGGARPVPLPPGWEEKTASDGRTFFVDHK*
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mRNA from alignment at E-fasciculatus_F_contig13958:1151..3433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13958.2899.1 ID=mRNA_E-fasciculatus_F_contig13958.2899.1|Name=mRNA_E-fasciculatus_F_contig13958.2899.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2283bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13958:1151..3433- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAGCCCACGGAGCACCGATGGTGGGCTCGACACCCGGCCTTGGTCA
GGTAACGCAGCAGCATGGAGTACGACGTCTCCTGTCGTGCGTTGCATGTA
GCTGGCGTCGAGTGTTTTCTACGTGTGCCCCCTTCACGAATTGTAACGTC
CCGATCTCCGGATAACCTGTCGTCTCAGGCTACGGGCGTGCGTTTCTCGC
CACACCGGTTTGCTTAGAGGGAGTCGGATGTTAGTGTTTCGCGTGTGTGT
CCCCATGCACCGTTGATAAGTCCCGATCCCTGGAGGGCTTGTCGCTTCAA
GCTACGCACTTGCCTTTTTTCGACATGTCGGTCTCCGATGCTTGCACGCG
AGCGCCATAAACGAGCGAAAGCGTGGTCTACCTGTGTGCCAACTCTTTCC
GTCCCGCTTCCCTACCTATGCTCGCTGTACCGTTTCCGTGTTGCCCGAAC
TCCCCCCCCCCTCCGTCCGTTTCTCGTTGCTGGTGTCCCGCCTTTCCCAC
CGAATACAGCCGTCGGCCTCCCCGATCCCCCCGCAATCCTCCATGCACTA
CGCCCAACACCCGTCCGCGGGGGGTTACCCCCAGTCTGCGGGGTACGGCG
GCGGAGGCCCTCAGCCATCGTTGTCGACCTCTGCCTACGGCGCCTCCCGT
TCGCCATCGGGATACGGCGGCGGCGGTGGTGCCCCTCAACCATCGCTGTC
GACTTCCATGTACGGGGCTCCTCCCGGTTCGGGGTCGGGGTACGGGGGCC
CTCGCCCGTCATCGTCTTCGTACGGGGCCCCCCAACCTGGAGCATCGTAT
GGCGGCCCTCAAGCAGCAACGGCGGGGCGGTACAACACCCCTCAGGTGCC
GCCAGCATCGGCGTACGGCGGCGCTCCTCAAGCACCGCCAGCGGCGTACG
GCAGCTCTCGAATCGCCGCGGCTGCGCCGCCGGCGGCGGCGCCGGCGGGG
TACGGGGCCGTTCAACCGCCGGCTTCGGCGACGTACGGCGGCGGCAGCCA
CCCGGCATCATCATCCGCTTACGGCAGCGGCGGCGGCTTGGGTGCCGGGG
CCGGTGCGCCGCAGCGAAACCCGAATGCCGTGTACTACGGTCCCGCCGCC
GGCAGCAGCGGCGCGGCGCCTTTGCCCGGCGGCGGCGGTGGCGGCGGGGC
GGGATTTAGCGGCGGCGGCTATTCTCGAGGTGAGCCAGCGGTGTGGAGCA
GGATTGATGGGGAGCCGGCCTTGTAGCTGTTTTCGCTGCGGCCGTGTTTT
TTTGGCGTGGGTGATGTGTTATGTCGGGCCACGTATCGCCACGTGTCATA
CAGATGCGCACATACGAATTGCTTGCTGTGTGCCATACCGATACGATACG
CACACGCACGAAAATCGGTGCCCCGCTTCGTCCAATCCTCTCCGCCCCCG
ACCCCACCAGGACCAAAAAAACGCTCTTCCTCTCCCGCGTTTCTTGTATC
AGTGCCCGCTCCAATCGCCCCTCCCTCATTCTGCACCCGCCCCGCCCCTA
CCACTCCCGTGCTTGCCCCCCACACACCAATGGCAACGAACTCTTTCCCC
CATTTTACGGCAACAACTCTCGCTATCGGAAGTCGGGGCGCCGCCGGCAC
CGGCCATGTCGCTCAAGTGGGGTACCCCGGCGGCGGCTCCGGCGGCGGCG
GCGGCGGCTCCGACTGCGGCGCAATACCCGACGTTTGGGGGTCCCGCAGC
GGCGCAGTACTCTGCCAGCACGGCCACACCCTACCATGCGCCTTCGGCAC
CGTCGGCTCCGTCGGCACCGCCGGCGCCGGCCCCAGCACCGGCAGCGGCG
TCGTACTCGAACGGCAGCAGTCCCTACAGCAACGGCGGCGGCGGCGGTAG
TACCTATGGTAACGGCAGCAATCCGTACACCAACGGCAGCGGCGGTGGTG
GTGGGGGTGGTGGCGGAGGCGCGCGTCCTGTTCCTCGTGAGTGCCGATTA
AAAGAGGATGCAATGGATGCAATGCCAGCAATGTTATTGTGGTGCTGCTG
CACACCAACAACTTGTGTCGCCTATCCCAATCCGGCATATTGCTCCGTCC
CGGCATGTAGGGATGCGAGGCCAATGGTCTATCGACCACGGCACGTGTTT
GCATGAGTACCCCCCCCCGAGCCCCCCCCCATTCTCTCTCTGACGCCGTT
TTTTTTCTGTGCGGTACCCCGCCGTTCGCTCCCTCACCACCGCCCTCCGC
TGCTGTTCGTTCGCGAAGTCCCCCCAGGCTGGGAAGAGAAGACCGCAAGC
GACGGACGGACGTTTTTCGTCGACCACAAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13958:1151..3433-

>mRNA_E-fasciculatus_F_contig13958.2899.1 ID=mRNA_E-fasciculatus_F_contig13958.2899.1|Name=mRNA_E-fasciculatus_F_contig13958.2899.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2280bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13958:1151..3433- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAGCCCACGGAGCACCGATGGTGGGCTCGACACCCGGCCTTGGTCA
GATGTCAGCCCACGGAGCACCGATGGTGGGCTCGACACCCGGCCTTGGTC
AGCCGTCGGCCTCCCCGATCCCCCCGCAATCCTCCATGCACTACGCCCAA
CACCCGTCCGCGGGGGGTTACCCCCAGTCTGCGGGGTACGGCGGCGGAGG
CCCTCAGCCATCGTTGTCGACCTCTGCCTACGGCGCCTCCCGTTCGCCAT
CGGGATACGGCGGCGGCGGTGGTGCCCCTCAACCATCGCTGTCGACTTCC
ATGTACGGGGCTCCTCCCGGTTCGGGGTCGGGGTACGGGGGCCCTCGCCC
GTCATCGTCTTCGTACGGGGCCCCCCAACCTGGAGCATCGTATGGCGGCC
CTCAAGCAGCAACGGCGGGGCGGTACAACACCCCTCAGGTGCCGCCAGCA
TCGGCGTACGGCGGCGCTCCTCAAGCACCGCCAGCGGCGTACGGCAGCTC
TCGAATCGCCGCGGCTGCGCCGCCGGCGGCGGCGCCGGCGGGGTACGGGG
CCGTTCAACCGCCGGCTTCGGCGACGTACGGCGGCGGCAGCCACCCGGCA
TCATCATCCGCTTACGGCAGCGGCGGCGGCTTGGGTGCCGGGGCCGGTGC
GCCGCAGCGAAACCCGAATGCCGTGTACTACGGTCCCGCCGCCGGCAGCA
GCGGCGCGGCGCCTTTGCCCGGCGGCGGCGGTGGCGGCGGGGCGGGATTT
AGCGGCGGCGGCTATTCTCGAGCCGTCGGCCTCCCCGATCCCCCCGCAAT
CCTCCATGCACTACGCCCAACACCCGTCCGCGGGGGGTTACCCCCAGTCT
GCGGGGTACGGCGGCGGAGGCCCTCAGCCATCGTTGTCGACCTCTGCCTA
CGGCGCCTCCCGTTCGCCATCGGGATACGGCGGCGGCGGTGGTGCCCCTC
AACCATCGCTGTCGACTTCCATGTACGGGGCTCCTCCCGGTTCGGGGTCG
GGGTACGGGGGCCCTCGCCCGTCATCGTCTTCGTACGGGGCCCCCCAACC
TGGAGCATCGTATGGCGGCCCTCAAGCAGCAACGGCGGGGCGGTACAACA
CCCCTCAGGTGCCGCCAGCATCGGCGTACGGCGGCGCTCCTCAAGCACCG
CCAGCGGCGTACGGCAGCTCTCGAATCGCCGCGGCTGCGCCGCCGGCGGC
GGCGCCGGCGGGGTACGGGGCCGTTCAACCGCCGGCTTCGGCGACGTACG
GCGGCGGCAGCCACCCGGCATCATCATCCGCTTACGGCAGCGGCGGCGGC
TTGGGTGCCGGGGCCGGTGCGCCGCAGCGAAACCCGAATGCCGTGTACTA
CGGTCCCGCCGCCGGCAGCAGCGGCGCGGCGCCTTTGCCCGGCGGCGGCG
GTGGCGGCGGGGCGGGATTTAGCGGCGGCGGCTATTCTCGAGTCGGGGCG
CCGCCGGCACCGGCCATGTCGCTCAAGTGGGGTACCCCGGCGGCGGCTCC
GGCGGCGGCGGCGGCGGCTCCGACTGCGGCGCAATACCCGACGTTTGGGG
GTCCCGCAGCGGCGCAGTACTCTGCCAGCACGGCCACACCCTACCATGCG
CCTTCGGCACCGTCGGCTCCGTCGGCACCGCCGGCGCCGGCCCCAGCACC
GGCAGCGGCGTCGTACTCGAACGGCAGCAGTCCCTACAGCAACGGCGGCG
GCGGCGGTAGTACCTATGGTAACGGCAGCAATCCGTACACCAACGGCAGC
GGCGGTGGTGGTGGGGGTGGTGGCGGAGGCGCGCGTCCTGTTCCTCTCGG
GGCGCCGCCGGCACCGGCCATGTCGCTCAAGTGGGGTACCCCGGCGGCGG
CTCCGGCGGCGGCGGCGGCGGCTCCGACTGCGGCGCAATACCCGACGTTT
GGGGGTCCCGCAGCGGCGCAGTACTCTGCCAGCACGGCCACACCCTACCA
TGCGCCTTCGGCACCGTCGGCTCCGTCGGCACCGCCGGCGCCGGCCCCAG
CACCGGCAGCGGCGTCGTACTCGAACGGCAGCAGTCCCTACAGCAACGGC
GGCGGCGGCGGTAGTACCTATGGTAACGGCAGCAATCCGTACACCAACGG
CAGCGGCGGTGGTGGTGGGGGTGGTGGCGGAGGCGCGCGTCCTGTTCCTC
TCCCCCCAGGCTGGGAAGAGAAGACCGCAAGCGACGGACGGACGTTTTTC
GTCGACCACAAGTGATCCCCCCAGGCTGGGAAGAGAAGACCGCAAGCGAC
GGACGGACGTTTTTCGTCGACCACAAGTGA
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