mRNA_E-fasciculatus_F_contig13954.2898.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13954.2898.1
Unique NamemRNA_E-fasciculatus_F_contig13954.2898.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13954.2898.1 vs. uniprot
Match: A0A6H5KGY7_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGY7_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 5.610e-84
Identity = 127/133 (95.49%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:   19 GLMKPLAAVATSFVAMKLLFSHHRKRKGIKSLEEEKKRWVQMKKDDLKQINQQFNQMEASLTASLNEKVIQSKKLEQFLYSLPDTNQDGLITRFEFDKYMNEYKRAHPGLTDHDLPRFEDMDHNNNGHINFHE 417
            GLMKPLAAVATSFVAMKLLFSHHRKRKGIK+LE+E+K+WVQMKK+DL+QINQQFNQMEASLTASLNEKVIQSKKLEQFLYSLPDTNQDGLITRFEFDKYMNEYKRAHPGLTDHDLPRFEDMDHNNNGHINFHE
Sbjct:   85 GLMKPLAAVATSFVAMKLLFSHHRKRKGIKALEQERKKWVQMKKEDLQQINQQFNQMEASLTASLNEKVIQSKKLEQFLYSLPDTNQDGLITRFEFDKYMNEYKRAHPGLTDHDLPRFEDMDHNNNGHINFHE 217
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BLAST of mRNA_E-fasciculatus_F_contig13954.2898.1 vs. uniprot
Match: A0A7S2LGL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGL3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.210e-7
Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = 1 
Query:    7 GEGGGLMKPLAAVATSFVAMKLLFSHHRKRKGIKSLEEEKKRWVQMKKDDLKQINQQFNQMEASLTASLN---EKVIQSKKLEQFL-----YSLPDTNQDGLITRFEFDKYMNEYKRAHPGLTDHDLPRFEDMDHNNNGHINFHE 417
            G GGG+ K +   A  ++A     S+  K K  K  ++E+K       +D+ Q+  Q  ++ A L   L      V +  +L+        +  PD + D  I+R EF+ Y+  Y   +PGLT+ D+P+FED DH+N+G ++F E
Sbjct:   60 GGGGGMGKMVIGGALGWLAGGKFHSNRTKTKLNKKHKKEQKALYTQYYNDVYQLQTQNAEL-AYLAEQLKTHARNVEEQAELDALQRDYDEFKQPDVDGDDRISRAEFNHYVKNYLSNYPGLTEKDMPKFEDFDHDNDGSVSFSE 203
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BLAST of mRNA_E-fasciculatus_F_contig13954.2898.1 vs. uniprot
Match: A0A482SNT9_9ARCH (EF-hand domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNT9_9ARCH)

HSP 1 Score: 50.4 bits (119), Expect = 6.860e-5
Identity = 21/54 (38.89%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  256 YSLPDTNQDGLITRFEFDKYMNEYKRAHPGLTDHDLPRFEDMDHNNNGHINFHE 417
            +  PDTN D +I+R EF+ Y+ +Y  + P L++ D P+F+D D + +G ++F E
Sbjct:   63 FKAPDTNNDDMISRAEFNAYVTKYLSSFPELSEADFPKFDDFDQDEDGLVSFDE 116
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13954.2898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGY7_9PHAE5.610e-8495.49EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2LGL3_9STRA4.210e-731.03Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A482SNT9_9ARCH6.860e-538.89EF-hand domain-containing protein n=1 Tax=archaeon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13954contigE-fasciculatus_F_contig13954:30..2882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.1e-07
Seed eggNOG ortholog35128.Thaps2171
EggNOG free text desc.EF-hand domain pair
EggNOG OGs2E463@1,2SB4A@2759,2XC32@2836
COG Functional cat.Z
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-24_002230.1
Exons4
Model size417
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13954.2898.1prot_E-fasciculatus_F_contig13954.2898.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13954 54..2882 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927886.3272624-UTR-E-fasciculatus_F_contig13954:29..531622927886.3272624-UTR-E-fasciculatus_F_contig13954:29..53Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13954 30..53 +
1695995738.53033-UTR-E-fasciculatus_F_contig13954:29..531695995738.53033-UTR-E-fasciculatus_F_contig13954:29..53Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13954 30..53 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927886.33959-CDS-E-fasciculatus_F_contig13954:53..1491622927886.33959-CDS-E-fasciculatus_F_contig13954:53..149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13954 54..149 +
1695995738.540181-CDS-E-fasciculatus_F_contig13954:53..1491695995738.540181-CDS-E-fasciculatus_F_contig13954:53..149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13954 54..149 +
1622927886.3544786-CDS-E-fasciculatus_F_contig13954:988..10631622927886.3544786-CDS-E-fasciculatus_F_contig13954:988..1063Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13954 989..1063 +
1695995738.5483077-CDS-E-fasciculatus_F_contig13954:988..10631695995738.5483077-CDS-E-fasciculatus_F_contig13954:988..1063Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13954 989..1063 +
1622927886.3686423-CDS-E-fasciculatus_F_contig13954:1703..18111622927886.3686423-CDS-E-fasciculatus_F_contig13954:1703..1811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13954 1704..1811 +
1695995738.5565648-CDS-E-fasciculatus_F_contig13954:1703..18111695995738.5565648-CDS-E-fasciculatus_F_contig13954:1703..1811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13954 1704..1811 +
1622927886.381893-CDS-E-fasciculatus_F_contig13954:2768..28821622927886.381893-CDS-E-fasciculatus_F_contig13954:2768..2882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13954 2769..2882 +
1695995738.5647786-CDS-E-fasciculatus_F_contig13954:2768..28821695995738.5647786-CDS-E-fasciculatus_F_contig13954:2768..2882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13954 2769..2882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13954.2898.1

>prot_E-fasciculatus_F_contig13954.2898.1 ID=prot_E-fasciculatus_F_contig13954.2898.1|Name=mRNA_E-fasciculatus_F_contig13954.2898.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=131bp
MKPLAAVATSFVAMKLLFSHHRKRKGIKSLEEEKKRWVQMKKDDLKQINQ
QFNQMEASLTASLNEKVIQSKKLEQFLYSLPDTNQDGLITRFEFDKYMNE
YKRAHPGLTDHDLPRFEDMDHNNNGHINFHE
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mRNA from alignment at E-fasciculatus_F_contig13954:30..2882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13954.2898.1 ID=mRNA_E-fasciculatus_F_contig13954.2898.1|Name=mRNA_E-fasciculatus_F_contig13954.2898.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2853bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13954:30..2882+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGCGGAGAGGGCGGCGGTCTGATGAAGCCGCTCGCAGCCGTGGCGAC
GAGCTTCGTGGCGATGAAGTTGCTCTTCTCCCACCACAGGAAGAGGAAGG
GCATCAAGTCGCTGGAGGAGGTGCGGAAATTTCTTCTTTGTAGGTTTTTC
TTAGTATGACACAACGAATCCATCTCAATCCGCAGAAAAATGCCTCGGAT
AGGTTAGCAATGGTTGTTCCATAGCGTCAGAGGAAAGCTACGTGAAGTTT
TCCTTCTTCAACTCCCGGTCGATCCCTCCTCGTCCAAACGAAGTCGATGC
ACGAGGACGTGCGGTTGTGTTCCCAAGTACTCGGCGGGGTGACCAGACGC
TGTTGACACCCTAGCAGCCGATCCTTGTAGACATGTGTACGAAGGCAGGG
GACTCCGTGATTTCATCAGATCAAACATGTGCCGTAAGGTTGCGAGTCTC
CACACAGGGGTGTCGCGCTTTTTGAAAACCTTCATTGCTCTACAACTTGG
GGGCCACCGCTGCCCGAAAAGGGCGGGTTTGGAATTTTCTCGTCGAGATC
TTTCATCGGACGTGTTTCTTGGCTTTCGCACCCTCCTAGTTGTGGAAGCT
TTGAAAACCTTAACACCCCGTACGGAGGCGCGCAACCTTACGGTACCCCC
AGAGGCTTCATGCATCATACCGACCGCCGGGTGCACCGTACAGGTTGGTT
GCGCCTTGGGCTCTCTCGTCGGGGAGACAAGGAGGCATTTTCCGCAAATT
AGTTGAGATATCACGCCCCCCTGAAGCGATTGTCAAAGGTCTAAGGCTAT
ACAGCAAAGAGATGTTGGGGCGCGGAGGCTCTCGTCGGGAACAGAGAGGC
ATGAGAACCAGTTCTTGGAGACAACAAGTTTGCCGTGGGATGTAGCTCCC
CGTTTTGATATATCCCCCTGCTTTGACCCCGCCGCCGACCTCGTGGTCAT
GTTTGCCAGGAGAAAAAGCGGTGGGTGCAGATGAAGAAGGACGACCTGAA
GCAGATCAATCAGCAGTTCAACCAGATGGAAGCGGTGAGCGAGTTTTGTC
TGATTCCCGGACGTCTTGTATTTTTGCCGGTGTTGTTATGGCAAAGCAAT
CCTCCTGTATTCATTCCGAGAAGGCGGCAGTGAACAACTCGTGGCAGAAA
CTTGTAGCGATTGCTGCCGTTTCATGATTCATGGCCACCGGGCTGGGCTT
GCTGAGTACCGTAGTTTGCGTAAGATACCACACCCCCTGGGCCGATCTTC
AATGCCCGATTGCTCCACGAGGAAGAGGGTGCCGAAATCAAAAGACAATG
CTGTTTAGAAGACGAGACTGCTGTTCCAACGCCGCCATTTTCGGCACCGT
CACTGCTTTTCCTTCCTGCTGAGAAATCGAGCCCTGAGAATCCGTCCACG
GGGTGTGCCATCTCATGCAACCTACGGTACATCACGGAGGAACGTATAGG
GCACACTGGGATCGGCGTAAGGACAGTTGAGTCTGTACGTGCGCGTGAAC
GTACTACTCGCATACCATCACGATACCGGGAGTTGGTACCAACATGACAA
CTCATCGTGGTGAACACAAGCTATGATTGTACTTTACCTGTTGGCTCAGG
AAAGCCCCCCCCCCCCCCCCCCCCCCCGCGAAACCTGTGAATCTACGAAC
CCCGGTGTTGGATGGGATGGTCAGTCGTTGACGGCCAGCCTAAACGAAAA
GGTTATCCAGTCCAAGAAGCTGGAGCAGTTCCTGTACTCCCTCCCCGACA
CCAACCAAGACGGGCTCATCACCCGCTTCGAGGTGAGCGCATGACTGCTG
TGGTTGTAACCGGGGCTGCTTCTTTTAGGCGGCCCGATCGCGAACAGGGC
CGAGACCTGTGGCTCATGACAGGCCCTTGCCCCGGGGACTAGTCAGTGTT
GCTGCTGCAGCAGCTGCTGCTGCTGCTGCTCCTGCTCCTGCACCGATGGG
GGTTGTGGAGCCACATGTCGCGGCTCTCGCTCTGTTGTGCAATACAGGAT
GAAAGTAGCAGCAGTGTTTATATTTGTAGTCATAGAGGTGTTTTTTAGGG
TCACCCTCGGGTTCTTGAAACCACCCAGCTCTCTTGCATCAGAGGGTCAC
GCCGCAGTTGAGTCGAGAGCGAACAGTTGTATCTACCGAACATTTTTTTT
TTCAGTGTTCCTCCTAACCTACTACTGTACTCTCGGCAGATCTCTATGCC
GTGGCCGATCTTGCCGGGAAAGGCGACCAATCCAGTAGTGGTTTTAGAAA
CGTGTGGCCTGTGTTTTCTTTTTTTTATGGCAAGCCGTAGACGGTAGCTT
GGTCCTGGGGAGATGAGAAGGTTCTGTCGCTTGACACTCTTATCCCACGA
TCACGTAGAGGTGCGGCTGCTGCTCGTTATTGCTGAGAGAAGCTCTGGGA
GAACGCGGAAATAATCCACTTCATCTCAGGGGGCACGCAGAATAGACATT
TCTGATGTCGTATGGGGGCCCTTACCATCCCACATCCTATCCTGAATAAG
ATACACCCAATTAATGTCAACAGCTGTACTCCTTAAAACTTGCTCGTGCT
GCCGCTTTGTTCATGCACCACCGTCCATGACGGGCAAGTATGTGAATGCT
GCTCTAGGTTTGTGATGGGACCACTCCACTTTTTCTTGAAACGGTTGGGT
AGCTTCTTGCAGCCGGGTCCAGGTGCCGCTTTGCTCACGCACCTCTGCTG
CTCCCGGAAAATTTTGGTTCTGTTGTTGTTTGTTGCCAGTTCGACAAGTA
CATGAACGAGTACAAGAGGGCGCACCCGGGCCTCACCGACCACGACCTTC
CGAGATTCGAGGACATGGACCACAACAACAACGGCCACATCAACTTCCAC
GAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13954:30..2882+

>mRNA_E-fasciculatus_F_contig13954.2898.1 ID=mRNA_E-fasciculatus_F_contig13954.2898.1|Name=mRNA_E-fasciculatus_F_contig13954.2898.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13954:30..2882+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGCCGCTCGCAGCCGTGGCGACGAGCTTCGTGGCGATGAAGTTGCT
CTTCTCCCACCACAGGAAGAGGAAGGGCATCAAGTCGCTGGAGGAGATGA
AGCCGCTCGCAGCCGTGGCGACGAGCTTCGTGGCGATGAAGTTGCTCTTC
TCCCACCACAGGAAGAGGAAGGGCATCAAGTCGCTGGAGGAGGAGAAAAA
GCGGTGGGTGCAGATGAAGAAGGACGACCTGAAGCAGATCAATCAGCAGT
TCAACCAGATGGAAGCGGAGAAAAAGCGGTGGGTGCAGATGAAGAAGGAC
GACCTGAAGCAGATCAATCAGCAGTTCAACCAGATGGAAGCGTCGTTGAC
GGCCAGCCTAAACGAAAAGGTTATCCAGTCCAAGAAGCTGGAGCAGTTCC
TGTACTCCCTCCCCGACACCAACCAAGACGGGCTCATCACCCGCTTCGAG
TCGTTGACGGCCAGCCTAAACGAAAAGGTTATCCAGTCCAAGAAGCTGGA
GCAGTTCCTGTACTCCCTCCCCGACACCAACCAAGACGGGCTCATCACCC
GCTTCGAGTTCGACAAGTACATGAACGAGTACAAGAGGGCGCACCCGGGC
CTCACCGACCACGACCTTCCGAGATTCGAGGACATGGACCACAACAACAA
CGGCCACATCAACTTCCACGAGTTCGACAAGTACATGAACGAGTACAAGA
GGGCGCACCCGGGCCTCACCGACCACGACCTTCCGAGATTCGAGGACATG
GACCACAACAACAACGGCCACATCAACTTCCACGAG
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