mRNA_E-fasciculatus_F_contig13952.2897.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13952.2897.1
Unique NamemRNA_E-fasciculatus_F_contig13952.2897.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13952.2897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13952contigE-fasciculatus_F_contig13952:117..3468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size421
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927886.2725244-CDS-E-fasciculatus_F_contig13952:116..2181622927886.2725244-CDS-E-fasciculatus_F_contig13952:116..218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13952 117..218 +
1695995738.511169-CDS-E-fasciculatus_F_contig13952:116..2181695995738.511169-CDS-E-fasciculatus_F_contig13952:116..218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13952 117..218 +
1622927886.2836757-CDS-E-fasciculatus_F_contig13952:3149..34671622927886.2836757-CDS-E-fasciculatus_F_contig13952:3149..3467Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13952 3150..3467 +
1695995738.5213995-CDS-E-fasciculatus_F_contig13952:3149..34671695995738.5213995-CDS-E-fasciculatus_F_contig13952:3149..3467Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13952 3150..3467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13952.2897.1prot_E-fasciculatus_F_contig13952.2897.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13952 117..3467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13952.2897.1

>prot_E-fasciculatus_F_contig13952.2897.1 ID=prot_E-fasciculatus_F_contig13952.2897.1|Name=mRNA_E-fasciculatus_F_contig13952.2897.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=140bp
GTRARVDVARSKLSLCPTWVKSTSRRSLQRSGLEAARQLCALFREPTSSG
SGSGRRRLAAGSGFVVVGSAVCLFAPRRRTRARVLEGLHRVRHSTASKGK
WETEGGAVKRRRLLFLGRQYEEVGTATAAARHVGVSRSGS
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mRNA from alignment at E-fasciculatus_F_contig13952:117..3468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13952.2897.1 ID=mRNA_E-fasciculatus_F_contig13952.2897.1|Name=mRNA_E-fasciculatus_F_contig13952.2897.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3352bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13952:117..3468+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGACGCGCGCGCGGGTAGACGTGGCTCGCAGCAAACTATCCTTGTGCCC
CACCTGGGTCAAAAGTACGAGTCGGCGGAGCCTTCAGCGATCTGGTCTAG
AGGTGAGCTTTTTACCTTGATGAATTTGGACGGGGGTGTCTCTCTTTTTT
TTTGACTGACGGGAGGTGCTTGCGCAAATGGTGGGTCGTTATCGCCTAGG
GGGGAGAGCTGCATCACCTGGATCAGGACGCGGGGTGGGGCGGACGGGTG
GCGGCAGGGGTGGAGAAGGAGAGGGCTCGACGAAGGACACCGGGGATGTG
TAGTTTGATGGTGTTGTTGTTGTCGTTGTTGTTGTTGTCGGGGTGAGCGT
CCACAGATAAGATGTCTTCGTTCGAAAAAAGCGCTCTCTCATGCGGCGTT
AAAAAATCCAGCCTGCTGCCGGCGAAGGTGCGCAAGGCAGCTCTGTAGCC
CACAACGGCATCCGGTCGATGCGTATGTCCCGCGAGAGCAGGCTTCCTGC
ACCAGCAAGATTGGGGTTGCTGACAAGGGTGTCTGGTTGTCGACGTTTGC
TTCAGCCGTTGGCGGTTCAAAGTTCGACTAGGAGTAGATGGTAGATGACC
AGACCGCTCGCCACGGGAGCCAATGAGGTGCTAATTAGCCCAACGCCATT
TTCCTCTCTCCACAGCAGTTTATAGCAATAGACAGACTCGCGGGGTGCGC
ACGCAGTCCCCACGGCAACTATGTCGCCCACCAGCTTGTTCCCGTTGCCA
GCTGCGTGGAAGGCGTCGGCATTTGACAGGCTCTTTAAAAGCGGTGCAGT
CGGTAGGCACCCGTTATTTTTGCTGTAGGTAACCAGATGCGAGCATTTTT
GTACGCTTCTCTCGTCTCTCTCGCCTGCTGTGCCGCTTTTTGAAAACCTG
CCCTCAGTTGAAAACCTGTCTCTCCCTCGATGTGATTGTCAAAGCGAGAC
AGACAGGCACACAAACGCGCAACAACCTTATGCCGGAGGAGCGAGAGCGC
TCACTCGCTGTGCAATGATGTAGCGGTAGCGGCCAACGACGTAGAAATTG
TGTTTTCCAACATAGCGCGTGCGGACTAGCAAGGATGGGGAGCCTTGTTT
TGGTCGGCGTTTTTTTGAAAAAAGTATCAACATCTTTCCTCCAACAGCCT
GGGTTTGCCACTGCTGTCGCTGCATCTGCATGGTGTGGCAGATCCCCGAG
GGGGCCTAGAGTTTATAGACTATAGACGCGCTTCGGATTGTTTTGCGTGG
TGTCGGGCAATCGACATGTTGTTTCCCAACGTAATTGGCCGGAGCTGTAT
GAGCGAGCACAGCAGCACGTGTGCATCAGGTTTTGTACTACTGCTGTACA
CGCTGCATGTACAGCAGTCGTGCGGCTATCTTCCGGTGTGATATAGTATG
CATCGCCATCTCCGTTTTACAACTGCTTTGCACAGCAGCACTCCTTGCTC
GGGGAGGGAGAGAGAGAGAGAGAGACAGCACTCCAAAACAATTACTGCGC
ACAGTCCTCCATGTGCAGTCCTCGCGGCCAGAGGAGAGGCAATCAGATCA
TATATAAAGTTGCAATATCCTCTCTCGCGCCAAGCGTGGTTTACACGTCG
TTGGCATTCCTCCGCACATCTCCGCCCGTGACACTTTCGTCGTTGAAGCT
GGCATCCAGTCCATTTTCCCGGAGAGCTTGCGCGGGTTGATGTGTGCGCC
GGCTGCAACCATGACAAGATTTTGATGCTAGTGCAGTTTTTTTGCTTTGC
TGCAATGCAGCAAGCAGTACGTTATTGTTCATAGCGATGCACTCGTTGTC
CCCTACGTTCGATTCCACGGTTTGGTTCCATGGTATCAGACTGCTGCTGC
TGTGTCGTCCAAATTTGGACAAAATTTTGTTGACGAAAGACCGAAACTCA
ACACGGCACAAGCATAAATCAACGAAGGCACGAGCGATCGCACACTCCCT
AGACCGACTTGCGAGGCTCGGCATCTCGGCATAGCCTCCACAACAAAAGA
GGAGTGCGAAAAAATATGTCGTCGGAGAGATGTTCGTAGATCTCTGTCGA
GAGCTTCCGCATGTGTCGGTGTGTTGTACATTGTAGGACACCCTCGGTTT
TTCGGTGCAATCGGGCCTTGACAGTCGGTCTAGGAGGTTGTGTGATGACA
ATCGTGCGCTTACGGTAGTTCCTGGAACGTCGTAAGGGGTTGTTGTCCTC
GGGCTGAGGTTGAAGTTGTGGGATCATGTCCATGCGAGAAGGAAGCTTAT
TGTCTGCTGGTTGTGTGTCTGACCCTCTCCGCCATGTGGTTGCACGCACT
ACAACCCCGAAAACACCTGGGAACTCGCCGGAAACGTGGTCAAGGTTTTG
TGCATGTCTGTTCCCGTGTGTATTGCGGCATCTACTTGGTGCTGGAAAAC
TTCTAACCTACATCTTTTCATTTCGTGACAGGGTCCTACACCCTCTTTCC
AACATCTCCCCACGGAGCTGCTGCTCATTCAACCTTATGTGGTGTCTAAC
GCGAGCCCTACTACGGCAATAGCTTTGCGGGTGTGGTTTTTGGTGTATGT
TGTTTTTTTTAAAGAAAATACAAATACAGACACAGAAAGACTACCCGTTC
GAGACAGAACCAAGCCGAAGGGGATGTGTTGAAGTCTTTACAGTGAGTGG
GCAGAAAACCGGCTGGATACCGGGCTTTTTGGTGCCTGTTTAAGCCTGTA
CACTGAATTTTTGTCAGCTTTTTGCAAGAAACGTCGTCGAAGCGGGACCG
GTGGTACCACCGCCGGCGTGCCGTCGGTCCTCTCAACGAACTCCCGTGCC
AGCAATGGCGACGAAGTTTTGCATATTGTCGCAGCAAAGTGACCTCTGGC
TGTACATCTGACAATATACAGCATACCTGCTGTTGTACCTCGTCTTTCCT
TTCCCATAACGAAGCTTACTATTTCTTCCCCGTGTCCCACCTTTTGCTCC
TGTTGTTCGCACCCCTCCCCCGCATGTTTTGGGAAACCCTCCCGAAAACT
CGCACCTGGTCGCGTGAACAACAACTTTGGCAGGCGGCGCGACAGCTCTG
CGCGCTCTTTCGTGAACCAACAAGCAGCGGCAGCGGCAGCGGCAGGCGGC
GGCTCGCTGCGGGTTCGGGCTTTGTGGTTGTTGGGTCAGCGGTGTGCCTT
TTCGCTCCCAGGCGAAGGACTCGGGCGCGGGTTCTGGAAGGGTTGCATCG
AGTGCGACACTCTACCGCAAGCAAGGGGAAGTGGGAAACGGAGGGCGGCG
CCGTCAAGAGGAGGAGGCTTTTGTTTCTTGGGCGGCAGTACGAGGAAGTT
GGGACGGCTACGGCAGCCGCGCGACATGTCGGCGTCTCCCGTAGCGGTAG
TC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13952:117..3468+

>mRNA_E-fasciculatus_F_contig13952.2897.1 ID=mRNA_E-fasciculatus_F_contig13952.2897.1|Name=mRNA_E-fasciculatus_F_contig13952.2897.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13952:117..3468+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGACGCGCGCGCGGGTAGACGTGGCTCGCAGCAAACTATCCTTGTGCCC
CACCTGGGTCAAAAGTACGAGTCGGCGGAGCCTTCAGCGATCTGGTCTAG
AGGGGACGCGCGCGCGGGTAGACGTGGCTCGCAGCAAACTATCCTTGTGC
CCCACCTGGGTCAAAAGTACGAGTCGGCGGAGCCTTCAGCGATCTGGTCT
AGAGGCGGCGCGACAGCTCTGCGCGCTCTTTCGTGAACCAACAAGCAGCG
GCAGCGGCAGCGGCAGGCGGCGGCTCGCTGCGGGTTCGGGCTTTGTGGTT
GTTGGGTCAGCGGTGTGCCTTTTCGCTCCCAGGCGAAGGACTCGGGCGCG
GGTTCTGGAAGGGTTGCATCGAGTGCGACACTCTACCGCAAGCAAGGGGA
AGTGGGAAACGGAGGGCGGCGCCGTCAAGAGGAGGAGGCTTTTGTTTCTT
GGGCGGCAGTACGAGGAAGTTGGGACGGCTACGGCAGCCGCGCGACATGT
CGGCGTCTCCCGTAGCGGTAGTGCGGCGCGACAGCTCTGCGCGCTCTTTC
GTGAACCAACAAGCAGCGGCAGCGGCAGCGGCAGGCGGCGGCTCGCTGCG
GGTTCGGGCTTTGTGGTTGTTGGGTCAGCGGTGTGCCTTTTCGCTCCCAG
GCGAAGGACTCGGGCGCGGGTTCTGGAAGGGTTGCATCGAGTGCGACACT
CTACCGCAAGCAAGGGGAAGTGGGAAACGGAGGGCGGCGCCGTCAAGAGG
AGGAGGCTTTTGTTTCTTGGGCGGCAGTACGAGGAAGTTGGGACGGCTAC
GGCAGCCGCGCGACATGTCGGCGTCTCCCGTAGCGGTAGT
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