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Homology
BLAST of mRNA_E-fasciculatus_F_contig13951.2896.1 vs. uniprot
Match: D7G3K3_ECTSI (G-patch domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K3_ECTSI) HSP 1 Score: 286 bits (732), Expect = 1.620e-84 Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 1
Query: 226 GSDLDEETKVTIRQTAEWFHANPDKSKVIMEKSRGNAQFSFLFDASSPGGRFYRQVLDEIKTEEEVKRVCSGFGEANASDYGPTPQDAGNVYGPGAGLAAXXXXXXXXXXXXXXXXXXATPSWAATSVAKPVATAXXXXXXXXXXXXXXXXAQIVAQISAQVAMRSASTYGPAPVATARPRKNRWGA 786
GSDLDEETK+TIRQTAEWFHANPDKSKVIMEKSRGNAQFSFLFDASSPGGRFYRQVLDEIKTEEEVKRVCSGFGEANASDYGPTPQDAGNVYGPGAGLAAXXXXXXXXXXXXXXXXX ATPSWAATSVAKPVAT XXXXXXXXXXXXXXXXAQIVAQISAQVAMRSASTYGPAPVATARPRKNRWGA
Sbjct: 566 GSDLDEETKITIRQTAEWFHANPDKSKVIMEKSRGNAQFSFLFDASSPGGRFYRQVLDEIKTEEEVKRVCSGFGEANASDYGPTPQDAGNVYGPGAGLAAXXXXXXXXXXXXXXXXX-ATPSWAATSVAKPVATXXXXXXXXXXXXXXXXXAQIVAQISAQVAMRSASTYGPAPVATARPRKNRWGA 751
BLAST of mRNA_E-fasciculatus_F_contig13951.2896.1 vs. uniprot
Match: A0A7S2R9A4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9A4_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.240e-12 Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 205 ALSQSSGGSDLDEETKVTIRQTAEWFHANPDKSKVIMEKSRGNAQFSFLFDASSPGGRFYRQVLDEIKTEEEVKRVCSG 441
A ++ G+ L + + I +TAEW NPDK +I+E S+GN +FSFLFD SS G+FY + +E++ EV+ VCSG
Sbjct: 301 AGTRGESGTMLSADRREEIEKTAEWLTQNPDKEDIILENSKGNPKFSFLFDPSSVEGQFYLKAKEEMRLAAEVRAVCSG 379
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 288.5 |
| Seed ortholog evalue | 4.2e-75 |
| Seed eggNOG ortholog | 2880.D7G3K3 |
| Preferred name | SUGP1 |
| KEGG ko | ko:K13096 |
| GOs | GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0031974,GO:0031981,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 |
| EggNOG free text desc. | RNA processing |
| EggNOG OGs | KOG0965@1,KOG0965@2759 |
| Ec32 ortholog description | SWAP/Surp |
| Ec32 ortholog | Ec-19_004980.1 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03041 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1059 |
| Cds size | 1059 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13951.2896.1 >prot_E-fasciculatus_F_contig13951.2896.1 ID=prot_E-fasciculatus_F_contig13951.2896.1|Name=mRNA_E-fasciculatus_F_contig13951.2896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=353bp
KENGSKEASSKTDNTSASSSAATTGAVATSALSGGAAATAAAGQAAAAAA
AAAAAAGGQVGVGLGAAVALSQSSGGSDLDEETKVTIRQTAEWFHANPDK
SKVIMEKSRGNAQFSFLFDASSPGGRFYRQVLDEIKTEEEVKRVCSGFGE
ANASDYGPTPQDAGNVYGPGAGLAAAAAGGGGGGGMGGGAAGGATPSWAA
TSVAKPVATAAAFGKGGDGGAPGGNAAQIVAQISAQVAMRSASTYGPAPV
ATARPRKNRWGAGAGGASAPAPAPAAAAAVDGAGRGGIGFGGGGNGVDAA
SSAAAAGLVAAAAAASSAGKSIVAAGGGGAEGVGLGKRSRGFSEGGAWGF
VV* back to topmRNA from alignment at E-fasciculatus_F_contig13951:974..3452- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13951.2896.1 ID=mRNA_E-fasciculatus_F_contig13951.2896.1|Name=mRNA_E-fasciculatus_F_contig13951.2896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2479bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13951:974..3452- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGAGAACGGTTCTAAGGAAGCTTCTTCCAAAACCGATAACACTTCTGC
GTCCTCGTCCGCGGCTACTACGGGAGCAGTCGCAACGAGTGCTCTATCCG
GCGGAGCAGCAGCAACTGCTGCTGCTGGTCAAGCTGCTGCTGCTGCTGCG
GCGGCGGCGGCGGCAGCGGGGGGGCAAGTCGGGGTAGGGCTCGGAGCGGC
GGTGGCTCTATCCCAATCGTCAGGCGGGTCGGACTTGGACGAGGAGACGA
AGGTTACCATCCGGCAGACGGCGGAGTGGTTCCATGCTAACCCAGACAAG
AGCAAGGTGCGTGCTTTGTTGTGTTGCGTTGTGTTGTGTTGTGTTGTGTT
GTGTGTTGTGTTGTGTTGTGTTGTGTTGCGTTGTGATGTGTGCTGTGTTG
CGTTGTGTTGTGTGTGCTGTGTTGTGTTGTTTTGTGTTGTGTTGCGTTGT
GTTGTGTCGTGTTGTGCTGTGTTGTGCTGTGTTGTGTTGTGCTGTGTTGT
GTTGTGCTGTGCTGTGTTGTGTTGTGTTGTGTTGTGTATTGTGTTGTATT
GTAATTGTGTTGGTGCTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTCGTG
TTGTGTTGTTGTGTATTGCGTTGTTTTAGTGTTTGTGTTGTGTTGTGCTG
CCCGATGCCTGGTCAGCACGCGTTCCCCATCAGCGCGAAAAAATGATTGT
GGACTCAGGGCCAGTCAGACCAATCTCCCACTGAAGCGATCCCCGAAACT
GTGAGCGTCCGTCGCTACCTATTCCATAGGCCTACGGCATGATTTTAAAC
ATTGCTTCGACGATGCTGGCTGGCATGTGCTTGGGGGAAAGCAGTCTCAC
GCAGCCATCGAAACGGTGTGTCGCGACAACGACGAAATTGCTCTGTTGTG
AACTTTGTAACCCACAACCCCGATGTTGTTCGCCACCCCCTGCGTACGTA
TCTACGATGCTTGAAACAACACAAGGTTATCATGGAGAAGAGCAGGGGCA
ACGCGCAGTTCAGCTTCCTGTTTGACGCGTCCTCGCCTGGGGGGCGGTTC
TACAGACAGGTAGGCCGGCACGGGCAATGTCCCCTAAAGGATTTATTTGT
TGGGCTCTCCCGACTTTCAGCGCAATGGCCAGGCGCGGAGATCACGAGGG
TTGGGGTGTGTGACGGTGTGGCTTTGTCCCAGTATTATGGCAGGCTTTTG
CGGTAGAGATGCGGTCGTATCGCAGCGCACACACGTTTTTATATATGCGG
TTCAGATCTTGGGACGAAGTCACTGATTATTATACCTCCTTGTCTTTGCG
CATTACATTTTCAGATCTTGGGACGAAATCACTGATTAATACCTCCTATC
TTGCGCATACCTTTTTTTTTGTTTTACATTTGCAGGTTTTGGACGAAATC
AAGACCGAGGAGGAAGTGAAGCGGGTATGCAGCGGCTTCGGGGAGGCTAA
CGCCTCCGACTACGGTCCAACTCCCCAGGACGCCGGTAACGTCTACGGCC
CGGGAGCCGGCCTCGCCGCCGCTGCCGCAGGCGGCGGCGGCGGCGGGGGG
ATGGGGGGGGGGGCTGCGGGCGGAGCAACCCCGTCTTGGGCGGCCACCAG
CGTGGCGAAACCCGTCGCCACGGCCGCGGCGTTTGGGAAGGGGGGAGACG
GAGGGGCGCCGGGAGGCAACGCGGCACAGATCGTTGCGCAGATCTCTGCA
CAGGTGACTGACTCCTGTATTTCGTGCGGAAGTTTGGGATTTTTTTGGCT
CTTTCTGAAAGCGGAAGATACATGCAATCACCGAAAGAGTATCCGTTGAA
GATAACGCCCCCATTCGGAGGGTGTCTTGAAGTGTTGTCAGGTTTTATGG
AGCCGGACCGAGTGCTATCCTTAGCACCAGCTTCTTTTCTTTTCGTATTT
TGTCGACTCACGCGAAACGCCTGCGGCGAGACGAACACCCCGTCTTGCCT
GTCGCTACGGGCCAACCGCAAGTCTTGCGCCTTGCTAACGACAAAGGCCG
TCGTCCCCGAACTCCAGTGCATCTGCTGCGCTATCTTGAGATTTATTTCT
CACGGACGCGTCCTTGTCGTTGTCACTGTTTCTTTTGACATTCCGCCCTT
CTCCCGCCCCACCCCCCCCCGCTATCAGGTGGCAATGCGCTCGGCCTCCA
CGTACGGCCCCGCACCGGTCGCGACGGCACGCCCTCGAAAGAATCGGTGG
GGGGCGGGAGCGGGCGGAGCGTCTGCGCCGGCGCCGGCACCGGCGGCAGC
GGCAGCGGTCGATGGAGCGGGCCGCGGCGGTATCGGGTTCGGGGGGGGTG
GAAACGGCGTTGACGCGGCGTCCTCGGCGGCGGCGGCGGGGCTGGTTGCG
GCGGCGGCGGCGGCTTCGAGCGCGGGGAAGAGTATTGTCGCCGCTGGCGG
CGGCGGTGCGGAGGGCGTGGGGCTGGGCAAGCGCAGCCGAGGTTTCAGCG
AGGGAGGTGCGTGGGGTTTTGTCGTGTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13951:974..3452- >mRNA_E-fasciculatus_F_contig13951.2896.1 ID=mRNA_E-fasciculatus_F_contig13951.2896.1|Name=mRNA_E-fasciculatus_F_contig13951.2896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2118bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13951:974..3452- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGAGAACGGTTCTAAGGAAGCTTCTTCCAAAACCGATAACACTTCTGC
GTCCTCGTCCGCGGCTACTACGGGAGCAGTCGCAACGAGTGCTCTATCCG
GCGGAGCAGCAGCAACTGCTGCTGCTGGTCAAGCTGCTGCTGCTGCTGCG
GCGGCGGCGGCGGCAGCGGGGGGGCAAGTCGGGGTAGGGCTCGGAGCGGC
GGTGGCTCTATCCCAATCGTCAGGCGGGTCGGACTTGGACGAGGAGACGA
AGGTTACCATCCGGCAGACGGCGGAGTGGTTCCATGCTAACCCAGACAAG
AGCAAGAAGGAGAACGGTTCTAAGGAAGCTTCTTCCAAAACCGATAACAC
TTCTGCGTCCTCGTCCGCGGCTACTACGGGAGCAGTCGCAACGAGTGCTC
TATCCGGCGGAGCAGCAGCAACTGCTGCTGCTGGTCAAGCTGCTGCTGCT
GCTGCGGCGGCGGCGGCGGCAGCGGGGGGGCAAGTCGGGGTAGGGCTCGG
AGCGGCGGTGGCTCTATCCCAATCGTCAGGCGGGTCGGACTTGGACGAGG
AGACGAAGGTTACCATCCGGCAGACGGCGGAGTGGTTCCATGCTAACCCA
GACAAGAGCAAGGTTATCATGGAGAAGAGCAGGGGCAACGCGCAGTTCAG
CTTCCTGTTTGACGCGTCCTCGCCTGGGGGGCGGTTCTACAGACAGGTTA
TCATGGAGAAGAGCAGGGGCAACGCGCAGTTCAGCTTCCTGTTTGACGCG
TCCTCGCCTGGGGGGCGGTTCTACAGACAGGTTTTGGACGAAATCAAGAC
CGAGGAGGAAGTGAAGCGGGTATGCAGCGGCTTCGGGGAGGCTAACGCCT
CCGACTACGGTCCAACTCCCCAGGACGCCGGTAACGTCTACGGCCCGGGA
GCCGGCCTCGCCGCCGCTGCCGCAGGCGGCGGCGGCGGCGGGGGGATGGG
GGGGGGGGCTGCGGGCGGAGCAACCCCGTCTTGGGCGGCCACCAGCGTGG
CGAAACCCGTCGCCACGGCCGCGGCGTTTGGGAAGGGGGGAGACGGAGGG
GCGCCGGGAGGCAACGCGGCACAGATCGTTGCGCAGATCTCTGCACAGGT
TTTGGACGAAATCAAGACCGAGGAGGAAGTGAAGCGGGTATGCAGCGGCT
TCGGGGAGGCTAACGCCTCCGACTACGGTCCAACTCCCCAGGACGCCGGT
AACGTCTACGGCCCGGGAGCCGGCCTCGCCGCCGCTGCCGCAGGCGGCGG
CGGCGGCGGGGGGATGGGGGGGGGGGCTGCGGGCGGAGCAACCCCGTCTT
GGGCGGCCACCAGCGTGGCGAAACCCGTCGCCACGGCCGCGGCGTTTGGG
AAGGGGGGAGACGGAGGGGCGCCGGGAGGCAACGCGGCACAGATCGTTGC
GCAGATCTCTGCACAGGTGGCAATGCGCTCGGCCTCCACGTACGGCCCCG
CACCGGTCGCGACGGCACGCCCTCGAAAGAATCGGTGGGGGGCGGGAGCG
GGCGGAGCGTCTGCGCCGGCGCCGGCACCGGCGGCAGCGGCAGCGGTCGA
TGGAGCGGGCCGCGGCGGTATCGGGTTCGGGGGGGGTGGAAACGGCGTTG
ACGCGGCGTCCTCGGCGGCGGCGGCGGGGCTGGTTGCGGCGGCGGCGGCG
GCTTCGAGCGCGGGGAAGAGTATTGTCGCCGCTGGCGGCGGCGGTGCGGA
GGGCGTGGGGCTGGGCAAGCGCAGCCGAGGTTTCAGCGAGGGAGGTGCGT
GGGGTTTTGTCGTGTGAGTGGCAATGCGCTCGGCCTCCACGTACGGCCCC
GCACCGGTCGCGACGGCACGCCCTCGAAAGAATCGGTGGGGGGCGGGAGC
GGGCGGAGCGTCTGCGCCGGCGCCGGCACCGGCGGCAGCGGCAGCGGTCG
ATGGAGCGGGCCGCGGCGGTATCGGGTTCGGGGGGGGTGGAAACGGCGTT
GACGCGGCGTCCTCGGCGGCGGCGGCGGGGCTGGTTGCGGCGGCGGCGGC
GGCTTCGAGCGCGGGGAAGAGTATTGTCGCCGCTGGCGGCGGCGGTGCGG
AGGGCGTGGGGCTGGGCAAGCGCAGCCGAGGTTTCAGCGAGGGAGGTGCG
TGGGGTTTTGTCGTGTGA back to top
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