mRNA_E-fasciculatus_F_contig13950.2895.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: D7FI12_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI12_ECTSI) HSP 1 Score: 380 bits (976), Expect = 3.780e-124 Identity = 223/329 (67.78%), Postives = 230/329 (69.91%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGSGPRFMNQDDETDSEPELVIPSRGNRDRSPEVPTAGMGGAVTLSGRAPPGASIRASDIHHLNPYGGGXXXXXXQAYLRGMAPPQDRMGAGGAVGXXAAAHL-HRGVLSGSGGGYGGAVGMEDNGWSRTRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQYLHRQGIPDGXXXXXXXXXXXXXXXDGLLVESPGGPPLGRFLDGMDSPIVDGMHTPGSMVSLDQVFEDDPQR 984
NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPP YTRKVYGSGPRFMNQDDETDSEPELVIPSRGNR+RSPEVP+ GMG AV L+GRAPPGASIR DIHHLNPY GGXXXXXX AYLRGM P QDR GAGGA G AAAHL HRGVLSG+G GYGGA+GMEDNGWSR RSGXXXXXXXXX DGLLVESPGGPPLGRFLDGMDSP+VDG HTPGSMVSLDQVF+DDPQR
Sbjct: 71 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPEYTRKVYGSGPRFMNQDDETDSEPELVIPSRGNRERSPEVPSPGMGSAVALAGRAPPGASIRPGDIHHLNPYAGGXXXXXXPAYLRGMTPSQDRTGAGGAAGGGAAAHLPHRGVLSGAGSGYGGAMGMEDNGWSRARSGXXXXXXXXXGAA------------------------------------------------------------------------------DGLLVESPGGPPLGRFLDGMDSPVVDGAHTPGSMVSLDQVFDDDPQR 321
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: A0A6H5L4Y2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y2_9PHAE) HSP 1 Score: 366 bits (939), Expect = 5.400e-118 Identity = 252/318 (79.25%), Postives = 259/318 (81.45%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGSGPRFMNQDDETDSEPELVIPSRGNRDRSPEVPTAGMGGAVTLSGRAPPGASIRASDIHHLNPYGGGXXXXXXQAYLRGMAPPQDRMGAGGAVGXXAAAHL-HRGVLSGSGGGYGGAVGMEDNGWSRTRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------GQYLHRQGIPDGXXXXXXXXXXXXXXX---DGLLVESPGGPPLGRFLDGMDSPIVDG 924
NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRP+LLSEVRRG+VPPCPP YTRKVYGSGPRFMNQDDETDSEPELVIPSRGNRDRSPEVP+ GMG AV LSGRAPPGASIR DIHHLNPY GG XXXXX AYLRGMAP QDR GAGGAVG AAAHL HRGVLSG+GGGYGGA+GMEDNGWSR RSGXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX GQYLHRQG+PDG XXXXXXXX DGLLVESPGGPP GRFLD MDSP+VDG
Sbjct: 52 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPDLLSEVRRGIVPPCPPEYTRKVYGSGPRFMNQDDETDSEPELVIPSRGNRDRSPEVPSPGMGSAVALSGRAPPGASIRPGDIHHLNPYAGGGXXXXXPAYLRGMAPSQDRTGAGGAVGGGAAAHLPHRGVLSGAGGGYGGAMGMEDNGWSRARSGXXXXXXXXXXXXXXXXXFYRGGMDGGVPTGIPYQQQQHQLQXXXXXXXXXXXXXXXXXXXXHHXXXXXXGQYLHRQGMPDGSGGGATWXXXXXXXXXXXDGLLVESPGGPPFGRFLDVMDSPVVDG 369
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: A0A6H5KNL3_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNL3_9PHAE) HSP 1 Score: 155 bits (391), Expect = 7.510e-36 Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGSGPRFMNQDDETDSEPELVIPSRGNRDRS 270
NKFSSFQRQLNLYGFRK+VKGRESGCYMHP FLRD PE L+EV+RGVVPPCPP Y+RK+YGSGPRFM+Q++ +DSEPELV+ +RG+ ++S
Sbjct: 52 NKFSSFQRQLNLYGFRKVVKGRESGCYMHPSFLRDSPEKLTEVKRGVVPPCPPCYSRKIYGSGPRFMSQEEGSDSEPELVVQARGHWEKS 141
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: A0A835YPY0_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY0_9STRA) HSP 1 Score: 115 bits (289), Expect = 5.950e-27 Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGSGPRFMNQDDETDSEPELVIPSRG 255
+KFSSFQRQLNLYGFRKIV+GRESG YMH F R R +LL V+RG +PPCPP Y +K+YGSG R +D E DS+PEL+ P RG
Sbjct: 36 DKFSSFQRQLNLYGFRKIVRGRESGGYMHKDFQRGRLDLLKHVKRGYMPPCPPEYEKKIYGSGAR--GEDSEADSDPELIPPPRG 118
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: A0A835YN41_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN41_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.630e-23 Identity = 56/91 (61.54%), Postives = 61/91 (67.03%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGSGPR------------FMNQDDETDSEPEL 237
+KFSSFQRQLNLYGFRKIVKGRESGCY+H F R PELL +VRRG VPPCPP Y RKVYG R D +DSEPE+
Sbjct: 69 DKFSSFQRQLNLYGFRKIVKGRESGCYIHCYFQRGHPELLKQVRRGQVPPCPPRYERKVYGCSTRPRQGAGSALDGTARTSDSSSDSEPEM 159
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: A0A835Z0U6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.510e-23 Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGS 186
+KFSSFQRQLNLYGFRKIVKG ESGCY+H F R PELL +VRRG +PPCPP Y KVYGS
Sbjct: 49 DKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 110
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: A0A835Z533_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z533_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 4.310e-21 Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGSG 189
+KFSSFQRQLNLYGFRKIV+G+E+G YMH F R R +LL VRRG +PPCPP Y RK+YGSG
Sbjct: 47 DKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 109
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: D8LU68_ECTSI (Heat Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 3.090e-15 Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGSG 189
NK+SSFQRQLNLYGFRK+V+G E+G YMHP+F R +PE LS+VRRG P PP + V+G G
Sbjct: 97 NKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEIPPEFAHDVHGHG 159
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: A0A6H5JLW3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 4.480e-13 Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRG------VVPPCPPAYTRKVYGSG 189
NK+SSFQRQLNLYGFRK+V+G E+G YMHP+F R +PE LS+VRRG P PP + V+G G
Sbjct: 74 NKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEEEAFPQIPPEFAHDVHGHG 142
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Match: A0A6H5JIP5_9PHAE (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP5_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.240e-12 Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 1 NKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGSGPRFMNQDDET--DSEPELVIPSR--GNRDRSPEVPTAGMGGAVTLSGRAPPG 333
NKFSSF+RQLNLYG+RK++KG ++G YMHP F R RPELL EV++G VP +++G R +T ++E V+P+ N SP P GGA S PG
Sbjct: 98 NKFSSFRRQLNLYGYRKVIKGPDAGAYMHPFFQRGRPELLGEVKKGKVPHYEMHGVNEIHGQHFRHHPPGVKTKENAEQAKVVPAHMTSNPCSSPVTPEL-QGGAGYPSPHGGPG 211 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13950.2895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13950.2895.1 >prot_E-fasciculatus_F_contig13950.2895.1 ID=prot_E-fasciculatus_F_contig13950.2895.1|Name=mRNA_E-fasciculatus_F_contig13950.2895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=339bp MHPMFLRDRPELLSEVRRGVVPPCPPAYTRKVYGSGPRFMNQDDETDSEPback to top mRNA from alignment at E-fasciculatus_F_contig13950:48..3408+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13950.2895.1 ID=mRNA_E-fasciculatus_F_contig13950.2895.1|Name=mRNA_E-fasciculatus_F_contig13950.2895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3361bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13950:48..3408+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13950:48..3408+ >mRNA_E-fasciculatus_F_contig13950.2895.1 ID=mRNA_E-fasciculatus_F_contig13950.2895.1|Name=mRNA_E-fasciculatus_F_contig13950.2895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2034bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13950:48..3408+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |