mRNA_E-fasciculatus_F_contig13943.2891.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13943.2891.1
Unique NamemRNA_E-fasciculatus_F_contig13943.2891.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13943.2891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13943contigE-fasciculatus_F_contig13943:29..201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_001940.1
Exons2
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927885.601182-CDS-E-fasciculatus_F_contig13943:28..721622927885.601182-CDS-E-fasciculatus_F_contig13943:28..72Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13943 29..72 +
1695995738.161563-CDS-E-fasciculatus_F_contig13943:28..721695995738.161563-CDS-E-fasciculatus_F_contig13943:28..72Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13943 29..72 +
1622927885.6166804-CDS-E-fasciculatus_F_contig13943:110..2011622927885.6166804-CDS-E-fasciculatus_F_contig13943:110..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13943 111..201 +
1695995738.170898-CDS-E-fasciculatus_F_contig13943:110..2011695995738.170898-CDS-E-fasciculatus_F_contig13943:110..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13943 111..201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13943.2891.1prot_E-fasciculatus_F_contig13943.2891.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13943 29..201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13943.2891.1

>prot_E-fasciculatus_F_contig13943.2891.1 ID=prot_E-fasciculatus_F_contig13943.2891.1|Name=mRNA_E-fasciculatus_F_contig13943.2891.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=45bp
NPHRRLLLQCRSGIILLVGFEEVYLFVQNKNEKINSVVRDTKNSY
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mRNA from alignment at E-fasciculatus_F_contig13943:29..201+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13943.2891.1 ID=mRNA_E-fasciculatus_F_contig13943.2891.1|Name=mRNA_E-fasciculatus_F_contig13943.2891.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=173bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13943:29..201+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATCCCCACCGGAGATTATTATTACAGTGTCGCTCAGGTATTATGTAGGC
GTGTTGTCAGGCGGATACATACAAATGAATAGCTTGTTAGTGGGGTTCGA
AGAGGTTTATTTGTTTGTGCAAAATAAGAATGAGAAGATTAACTCCGTCG
TGCGGGACACGAAGAATTCGTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13943:29..201+

>mRNA_E-fasciculatus_F_contig13943.2891.1 ID=mRNA_E-fasciculatus_F_contig13943.2891.1|Name=mRNA_E-fasciculatus_F_contig13943.2891.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13943:29..201+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATCCCCACCGGAGATTATTATTACAGTGTCGCTCAGGTATTATAATCCC
CACCGGAGATTATTATTACAGTGTCGCTCAGGTATTATCTTGTTAGTGGG
GTTCGAAGAGGTTTATTTGTTTGTGCAAAATAAGAATGAGAAGATTAACT
CCGTCGTGCGGGACACGAAGAATTCGTACCTTGTTAGTGGGGTTCGAAGA
GGTTTATTTGTTTGTGCAAAATAAGAATGAGAAGATTAACTCCGTCGTGC
GGGACACGAAGAATTCGTAC
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