mRNA_E-fasciculatus_F_contig13943.2892.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13943.2892.1
Unique NamemRNA_E-fasciculatus_F_contig13943.2892.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13943.2892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13943contigE-fasciculatus_F_contig13943:2072..3015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size944
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13943.2892.1prot_E-fasciculatus_F_contig13943.2892.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13943 2141..2755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927885.4995174-UTR-E-fasciculatus_F_contig13943:2071..21401622927885.4995174-UTR-E-fasciculatus_F_contig13943:2071..2140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13943 2072..2140 +
1695995738.1236923-UTR-E-fasciculatus_F_contig13943:2071..21401695995738.1236923-UTR-E-fasciculatus_F_contig13943:2071..2140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13943 2072..2140 +
1622927885.5407624-UTR-E-fasciculatus_F_contig13943:2755..30151622927885.5407624-UTR-E-fasciculatus_F_contig13943:2755..3015Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13943 2756..3015 +
1695995738.1515067-UTR-E-fasciculatus_F_contig13943:2755..30151695995738.1515067-UTR-E-fasciculatus_F_contig13943:2755..3015Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13943 2756..3015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927885.5171793-CDS-E-fasciculatus_F_contig13943:2140..27551622927885.5171793-CDS-E-fasciculatus_F_contig13943:2140..2755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13943 2141..2755 +
1695995738.1409698-CDS-E-fasciculatus_F_contig13943:2140..27551695995738.1409698-CDS-E-fasciculatus_F_contig13943:2140..2755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13943 2141..2755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13943.2892.1

>prot_E-fasciculatus_F_contig13943.2892.1 ID=prot_E-fasciculatus_F_contig13943.2892.1|Name=mRNA_E-fasciculatus_F_contig13943.2892.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=205bp
MFVCSNALSILHANPFSRYKIHHASPTMATCARGPFSRPFGLTHKGSYNK
LRKAAAFYLYFASTLAESLTSLSPILPVLHRRLRRAFAVWQRIRLPFDEK
THIITRTDQPTTPGPKNNLRPTLDIHSVEPIVLEPRNPTSDNNPLPTSTH
NRDLKYTQDLDRKVVLPFLATTGFAKKNSPLIYPCVPGARRNTHEVREKH
YLAS*
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mRNA from alignment at E-fasciculatus_F_contig13943:2072..3015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13943.2892.1 ID=mRNA_E-fasciculatus_F_contig13943.2892.1|Name=mRNA_E-fasciculatus_F_contig13943.2892.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=944bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13943:2072..3015+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCCGTCTTCTTTGTTCAAGTACTTTTTTTACTGTCTCGACAGTTATCT
TTTCATCTTTATCTTTTCGATGTTTGTTTGTTCCAACGCCCTCTCGATTC
TACACGCAAATCCTTTCTCGAGGTATAAAATTCATCATGCTTCACCTACA
ATGGCCACGTGCGCGCGTGGACCATTTTCGCGTCCTTTCGGCCTAACACA
CAAGGGAAGTTACAACAAACTACGCAAAGCCGCCGCCTTCTACCTTTACT
TCGCCTCAACCCTTGCTGAGTCTTTAACTTCTCTCTCGCCCATCTTGCCG
GTTTTGCACCGCCGGCTGCGTCGAGCTTTTGCCGTGTGGCAAAGGATCAG
ACTGCCGTTCGATGAAAAAACACACATCATCACACGCACGGACCAACCAA
CCACACCTGGACCAAAAAACAACCTACGACCTACCCTCGACATACACTCT
GTTGAACCCATCGTGCTAGAACCACGCAACCCTACCTCCGACAATAACCC
GCTACCGACAAGCACGCACAACAGGGATTTGAAATATACTCAGGATCTAG
ATAGGAAGGTGGTGCTGCCTTTCCTCGCTACAACGGGCTTCGCTAAAAAA
AACAGCCCATTAATATACCCTTGCGTACCGGGTGCACGACGGAACACACA
CGAGGTACGCGAAAAGCACTATTTAGCTAGCTAGCATCGTCCACGATACT
TTCCAAGAAACTACTTAAACGGAGTATAGGAGTATATGTGCTTGTCCGTC
CATCGTAACGCCCCCCCCCATCACTCATCTGACGCCGACCTACGGTAGAT
ATCTATAGAGGACGATAAAAACAAAACAAGCGAGTCGCATCGCCGTTGAT
GACCCTCTGCTTCACATCAACACTTGGCACAAAGATGTAGATATAACTGC
TTCACACGCCCCGAGATGCCATTCCGCTACACAAAACATAGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13943:2072..3015+

>mRNA_E-fasciculatus_F_contig13943.2892.1 ID=mRNA_E-fasciculatus_F_contig13943.2892.1|Name=mRNA_E-fasciculatus_F_contig13943.2892.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1230bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13943:2072..3015+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTGTTTGTTCCAACGCCCTCTCGATTCTACACGCAAATCCTTTCTC
GAGGTATAAAATTCATCATGCTTCACCTACAATGGCCACGTGCGCGCGTG
GACCATTTTCGCGTCCTTTCGGCCTAACACACAAGGGAAGTTACAACAAA
CTACGCAAAGCCGCCGCCTTCTACCTTTACTTCGCCTCAACCCTTGCTGA
GTCTTTAACTTCTCTCTCGCCCATCTTGCCGGTTTTGCACCGCCGGCTGC
GTCGAGCTTTTGCCGTGTGGCAAAGGATCAGACTGCCGTTCGATGAAAAA
ACACACATCATCACACGCACGGACCAACCAACCACACCTGGACCAAAAAA
CAACCTACGACCTACCCTCGACATACACTCTGTTGAACCCATCGTGCTAG
AACCACGCAACCCTACCTCCGACAATAACCCGCTACCGACAAGCACGCAC
AACAGGGATTTGAAATATACTCAGGATCTAGATAGGAAGGTGGTGCTGCC
TTTCCTCGCTACAACGGGCTTCGCTAAAAAAAACAGCCCATTAATATACC
CTTGCGTACCGGGTGCACGACGGAACACACACGAGGTACGCGAAAAGCAC
TATTTAGCTAGCTAGATGTTTGTTTGTTCCAACGCCCTCTCGATTCTACA
CGCAAATCCTTTCTCGAGGTATAAAATTCATCATGCTTCACCTACAATGG
CCACGTGCGCGCGTGGACCATTTTCGCGTCCTTTCGGCCTAACACACAAG
GGAAGTTACAACAAACTACGCAAAGCCGCCGCCTTCTACCTTTACTTCGC
CTCAACCCTTGCTGAGTCTTTAACTTCTCTCTCGCCCATCTTGCCGGTTT
TGCACCGCCGGCTGCGTCGAGCTTTTGCCGTGTGGCAAAGGATCAGACTG
CCGTTCGATGAAAAAACACACATCATCACACGCACGGACCAACCAACCAC
ACCTGGACCAAAAAACAACCTACGACCTACCCTCGACATACACTCTGTTG
AACCCATCGTGCTAGAACCACGCAACCCTACCTCCGACAATAACCCGCTA
CCGACAAGCACGCACAACAGGGATTTGAAATATACTCAGGATCTAGATAG
GAAGGTGGTGCTGCCTTTCCTCGCTACAACGGGCTTCGCTAAAAAAAACA
GCCCATTAATATACCCTTGCGTACCGGGTGCACGACGGAACACACACGAG
GTACGCGAAAAGCACTATTTAGCTAGCTAG
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