mRNA_E-fasciculatus_F_contig13928.2883.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13928.2883.1
Unique NamemRNA_E-fasciculatus_F_contig13928.2883.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13928.2883.1 vs. uniprot
Match: D8LKI1_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.780e-18
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 GLRPVHLAVVHGFLFCLEELADRGVDLEATDGDGETPLSLAVR 129
            GLRPVHL VVHGFLFCLEELADRGVDLEATDGDGETPL LAVR
Sbjct: 1873 GLRPVHLTVVHGFLFCLEELADRGVDLEATDGDGETPLLLAVR 1915
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BLAST of mRNA_E-fasciculatus_F_contig13928.2883.1 vs. uniprot
Match: A0A7M7PCZ6_STRPU (ZU5 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PCZ6_STRPU)

HSP 1 Score: 51.6 bits (122), Expect = 7.230e-6
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 GLRPVHLAVVHGFLFCLEELADRGVDLEATDGDGETPLSLAVRVCNRNSR 150
            GL PVHLA + G    LE L  RG +L     DG+TPL LAV++C  + R
Sbjct: 1272 GLTPVHLATIKGLTSVLELLLSRGAELNGQANDGQTPLHLAVKLCQCSER 1321
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13928.2883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKI1_ECTSI1.780e-1895.35Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
A0A7M7PCZ6_STRPU7.230e-648.00ZU5 domain-containing protein n=1 Tax=Strongylocen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13928contigE-fasciculatus_F_contig13928:777..989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.9e-15
Seed eggNOG ortholog2880.D8LKI1
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.3869405-CDS-E-fasciculatus_F_contig13928:776..9891622927884.3869405-CDS-E-fasciculatus_F_contig13928:776..989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13928 777..989 +
1695995737.4995918-CDS-E-fasciculatus_F_contig13928:776..9891695995737.4995918-CDS-E-fasciculatus_F_contig13928:776..989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13928 777..989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13928.2883.1prot_E-fasciculatus_F_contig13928.2883.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13928 777..989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13928.2883.1

>prot_E-fasciculatus_F_contig13928.2883.1 ID=prot_E-fasciculatus_F_contig13928.2883.1|Name=mRNA_E-fasciculatus_F_contig13928.2883.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=71bp
GLRPVHLAVVHGFLFCLEELADRGVDLEATDGDGETPLSLAVRVCNRNSR
HMHHFTCVMLHPFFLHAWGI*
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mRNA from alignment at E-fasciculatus_F_contig13928:777..989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13928.2883.1 ID=mRNA_E-fasciculatus_F_contig13928.2883.1|Name=mRNA_E-fasciculatus_F_contig13928.2883.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=213bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13928:777..989+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCTGCGCCCGGTGCATCTCGCCGTCGTCCACGGCTTCCTCTTCTGCTT
GGAAGAGCTCGCCGATCGCGGGGTTGACCTGGAGGCCACCGACGGGGACG
GGGAGACGCCCCTGTCGCTCGCGGTTCGGGTGTGTAACCGAAATTCCCGG
CATATGCACCATTTTACCTGCGTCATGTTGCACCCCTTCTTCCTGCACGC
ATGGGGTATTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13928:777..989+

>mRNA_E-fasciculatus_F_contig13928.2883.1 ID=mRNA_E-fasciculatus_F_contig13928.2883.1|Name=mRNA_E-fasciculatus_F_contig13928.2883.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13928:777..989+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCTGCGCCCGGTGCATCTCGCCGTCGTCCACGGCTTCCTCTTCTGCTT
GGAAGAGCTCGCCGATCGCGGGGTTGACCTGGAGGCCACCGACGGGGACG
GGGAGACGCCCCTGTCGCTCGCGGTTCGGGTGTGTAACCGAAATTCCCGG
CATATGCACCATTTTACCTGCGTCATGTTGCACCCCTTCTTCCTGCACGC
ATGGGGTATTTAGGGCCTGCGCCCGGTGCATCTCGCCGTCGTCCACGGCT
TCCTCTTCTGCTTGGAAGAGCTCGCCGATCGCGGGGTTGACCTGGAGGCC
ACCGACGGGGACGGGGAGACGCCCCTGTCGCTCGCGGTTCGGGTGTGTAA
CCGAAATTCCCGGCATATGCACCATTTTACCTGCGTCATGTTGCACCCCT
TCTTCCTGCACGCATGGGGTATTTAG
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