mRNA_E-fasciculatus_F_contig13927.2882.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13927.2882.1
Unique NamemRNA_E-fasciculatus_F_contig13927.2882.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13927.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13927contigE-fasciculatus_F_contig13927:741..1255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size517
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.3263395-UTR-E-fasciculatus_F_contig13927:740..9431622927884.3263395-UTR-E-fasciculatus_F_contig13927:740..943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13927 741..943 +
1695995737.4760253-UTR-E-fasciculatus_F_contig13927:740..9431695995737.4760253-UTR-E-fasciculatus_F_contig13927:740..943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13927 741..943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.3447516-CDS-E-fasciculatus_F_contig13927:943..12551622927884.3447516-CDS-E-fasciculatus_F_contig13927:943..1255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13927 944..1255 +
1695995737.48803-CDS-E-fasciculatus_F_contig13927:943..12551695995737.48803-CDS-E-fasciculatus_F_contig13927:943..1255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13927 944..1255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13927.2882.1prot_E-fasciculatus_F_contig13927.2882.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13927 944..1255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13927.2882.1

>prot_E-fasciculatus_F_contig13927.2882.1 ID=prot_E-fasciculatus_F_contig13927.2882.1|Name=mRNA_E-fasciculatus_F_contig13927.2882.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
MMMMMTTEGLRVGWAMTDARRYWAERTVLNVKRTTTMTAATTMTAATTMT
ATTTTTTIQCTPTNQVRSISTIPVQQQYQCWPGGSRSRLQESTQRQQDAI
LLLV
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mRNA from alignment at E-fasciculatus_F_contig13927:741..1255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13927.2882.1 ID=mRNA_E-fasciculatus_F_contig13927.2882.1|Name=mRNA_E-fasciculatus_F_contig13927.2882.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=515bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13927:741..1255+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAAATTTGTAGAATTGGGGGGGGTCGGGGGGCAGTTCCTCGGAAACCA
CTTGGGTCGAATTTGGTGGTCTCAATGGCCGGCCGGCCCTCTCCATGTCG
GAATACGGCACAGCCACCTTTGGACCATTTATTATCCCTCGCACGAACGT
TCTAGACAGGTGATCTGGTAGACCCATACCCCTCTTTGGATAGTTGGCCT
GTGATGATGATGATGATGACCACGGAAGGTCTCCGCGTCGGTTGGGCCAT
GACGGATGCTAGAAGGTACTGGGCAGAGAGAACGGTTCTTAATGTGAAGA
GAACAACAACAATGACAGCAGCAACAACAATGACAGCAGCAACAACAATG
ACAGCAACAACAACGACAACAACAATCCAGTGCACCCCAACGAACCAAGT
ACGAAGTATCTCTACAATACCAGTACAGCAGCAGTATCAGTGCTGGCCTG
GCGGCTCAAGGTCGCGCCTCCAGGAATCGACTCAAAGACAACAAGACGCC
ATCCTTCTTCTGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13927:741..1255+

>mRNA_E-fasciculatus_F_contig13927.2882.1 ID=mRNA_E-fasciculatus_F_contig13927.2882.1|Name=mRNA_E-fasciculatus_F_contig13927.2882.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13927:741..1255+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGATGATGATGACCACGGAAGGTCTCCGCGTCGGTTGGGCCATGAC
GGATGCTAGAAGGTACTGGGCAGAGAGAACGGTTCTTAATGTGAAGAGAA
CAACAACAATGACAGCAGCAACAACAATGACAGCAGCAACAACAATGACA
GCAACAACAACGACAACAACAATCCAGTGCACCCCAACGAACCAAGTACG
AAGTATCTCTACAATACCAGTACAGCAGCAGTATCAGTGCTGGCCTGGCG
GCTCAAGGTCGCGCCTCCAGGAATCGACTCAAAGACAACAAGACGCCATC
CTTCTTCTGGTGATGATGATGATGATGACCACGGAAGGTCTCCGCGTCGG
TTGGGCCATGACGGATGCTAGAAGGTACTGGGCAGAGAGAACGGTTCTTA
ATGTGAAGAGAACAACAACAATGACAGCAGCAACAACAATGACAGCAGCA
ACAACAATGACAGCAACAACAACGACAACAACAATCCAGTGCACCCCAAC
GAACCAAGTACGAAGTATCTCTACAATACCAGTACAGCAGCAGTATCAGT
GCTGGCCTGGCGGCTCAAGGTCGCGCCTCCAGGAATCGACTCAAAGACAA
CAAGACGCCATCCTTCTTCTGGTG
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