mRNA_E-fasciculatus_F_contig13920.2880.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13920.2880.1
Unique NamemRNA_E-fasciculatus_F_contig13920.2880.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13920.2880.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.470e-78
Identity = 136/151 (90.07%), Postives = 137/151 (90.73%), Query Frame = 1 
Query:    1 PEELQEMVKSVQAVLGGTEEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVAGLNRGLRRAWKSKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDXXXXXXX----REVDVGGGGGRGSDFETVRRVNQLVRQ 441
            PEEL+EMVKSVQAVLGGT EPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVA LNRGLRRAWK KKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDD           REVDVGGGGGRGSDFETVRRVNQLVRQ
Sbjct:  340 PEELEEMVKSVQAVLGGTGEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLRRAWKGKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDYDDQAWREYDDREVDVGGGGGRGSDFETVRRVNQLVRQ 490
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BLAST of mRNA_E-fasciculatus_F_contig13920.2880.1 vs. uniprot
Match: A0A7S2AVJ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AVJ1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.600e-11
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 1 
Query:   67 GLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVAGLNRGLRRAWKSKKG--DLDKAYRV-----DKDLAAAEAKRLIA-MEKRQEDDAYLLSREYDDDXXXXXXXREVDVGGGGGRGSDFETVRRVNQLVRQE 444
            GLG GFVEA L    +S   V+ AVL+D LPPQ+ G++R L R   S+K   D+D  Y V     D D+   + ++LI  M++ +ED+A++LSREYDDD        +  V     + ++ E  RR+N ++R +
Sbjct:    1 GLGAGFVEAMLVFHDFSVARVVAAVLDDNLPPQLEGMDRKLGRYRVSRKDLKDIDAGYSVGSQARDDDVLREKQRQLIRNMDRDEEDNAWVLSREYDDDFDDQF---DNVVSFEVCKETEQENTRRMNSIIRDK 131
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BLAST of mRNA_E-fasciculatus_F_contig13920.2880.1 vs. uniprot
Match: A0A4D9DC10_9STRA (CUE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC10_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.110e-9
Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 1 
Query:   10 LQEMVKSVQAVLGGTEEP-GGLGEGFVEACLSVLGWSPQGVIEAVLE-DRLPPQVAGLNRGLRRAWKS----KKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDXXXXXXXREVDVGGGGGRGSDFETVRRVNQLVRQE 444
            +Q   +SV+A++    +   GLGEGFV ACL+V+G++   V+ A+LE   LP  +  L+R L     +    KKG  +     D++  A +   L  MEK  E+DAYLL +EYDDD        +        R  DFE +R+ N L+R+E
Sbjct:  413 VQRPARSVEAMVQEVRQVCPGLGEGFVHACLAVMGYNINMVVNALLEGSALPYPLDTLDRSLPSPLGADKLRKKGREEAEEARDEEFIARQKAYLRQMEKDAEEDAYLL-QEYDDDFDDQYAGEQTMFSRDTTR-EDFEAIRKYNNLMRKE 561
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BLAST of mRNA_E-fasciculatus_F_contig13920.2880.1 vs. uniprot
Match: A0A836CBT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.930e-6
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 LQEMVKSVQAVLGGTEEPGGLGEGFVEACLSVLGWSPQ 123
            L  M+  VQ V GG E+ GG+GEGFVEACLS++GWSPQ
Sbjct:  734 LAAMIAEVQEVFGGPEQEGGVGEGFVEACLSLMGWSPQ 771
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BLAST of mRNA_E-fasciculatus_F_contig13920.2880.1 vs. uniprot
Match: A0A7S2BCH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCH7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.150e-5
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 1 
Query:   70 LGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVAGLNRGLRR----AWKSKKGD--LDKAYRVDKDLAAAEAKRLIAMEKRQ-EDDAYLLSREYDDDXXXXXXXREVDVGGGGGRGSDFETVRRVNQLVRQE 444
            LGEGFVE CL+   +S + V+  +LED LPPQ+A ++R  +R      K ++G+  +    + D D A A+   L  ME+ + E +A+L++   D  XXXXXXX   ++G       D E  ++ N  +R++
Sbjct:    1 LGEGFVEVCLAFHDFSVETVVNKILEDDLPPQLADMDRTTKRFRVNMGKVERGNFTVGTTVKADDDFAQAQKAYLRQMEEEEHEKEAFLMAEYNDXXXXXXXXXNNFEIGHSD---RDLEATKKSNAAIREK 129
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13920.2880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L6J2_9PHAE1.470e-7890.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2AVJ1_9STRA3.600e-1138.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9DC10_9STRA7.110e-935.76CUE domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A836CBT6_9STRA5.930e-665.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BCH7_9STRA1.150e-534.85Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13920contigE-fasciculatus_F_contig13920:611..3485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-23_002680.1
Exons5
Model size675
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13920.2880.1prot_E-fasciculatus_F_contig13920.2880.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13920 629..3485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.150708-UTR-E-fasciculatus_F_contig13920:610..6281622927884.150708-UTR-E-fasciculatus_F_contig13920:610..628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13920 611..628 +
1695995737.363492-UTR-E-fasciculatus_F_contig13920:610..6281695995737.363492-UTR-E-fasciculatus_F_contig13920:610..628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13920 611..628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.1609669-CDS-E-fasciculatus_F_contig13920:628..7331622927884.1609669-CDS-E-fasciculatus_F_contig13920:628..733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 629..733 +
1695995737.375003-CDS-E-fasciculatus_F_contig13920:628..7331695995737.375003-CDS-E-fasciculatus_F_contig13920:628..733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 629..733 +
1622927884.1722405-CDS-E-fasciculatus_F_contig13920:1336..14171622927884.1722405-CDS-E-fasciculatus_F_contig13920:1336..1417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 1337..1417 +
1695995737.3885744-CDS-E-fasciculatus_F_contig13920:1336..14171695995737.3885744-CDS-E-fasciculatus_F_contig13920:1336..1417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 1337..1417 +
1622927884.1847837-CDS-E-fasciculatus_F_contig13920:1786..19331622927884.1847837-CDS-E-fasciculatus_F_contig13920:1786..1933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 1787..1933 +
1695995737.39738-CDS-E-fasciculatus_F_contig13920:1786..19331695995737.39738-CDS-E-fasciculatus_F_contig13920:1786..1933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 1787..1933 +
1622927884.1978312-CDS-E-fasciculatus_F_contig13920:2613..27531622927884.1978312-CDS-E-fasciculatus_F_contig13920:2613..2753Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 2614..2753 +
1695995737.4049597-CDS-E-fasciculatus_F_contig13920:2613..27531695995737.4049597-CDS-E-fasciculatus_F_contig13920:2613..2753Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 2614..2753 +
1622927884.2100375-CDS-E-fasciculatus_F_contig13920:3301..34851622927884.2100375-CDS-E-fasciculatus_F_contig13920:3301..3485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 3302..3485 +
1695995737.4125729-CDS-E-fasciculatus_F_contig13920:3301..34851695995737.4125729-CDS-E-fasciculatus_F_contig13920:3301..3485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13920 3302..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13920.2880.1

>prot_E-fasciculatus_F_contig13920.2880.1 ID=prot_E-fasciculatus_F_contig13920.2880.1|Name=mRNA_E-fasciculatus_F_contig13920.2880.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=219bp
MVKSVQAVLGGTEEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQV
AGLNRGLRRAWKSKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLL
SREYDDDYDDQYDDREVDVGGGGGRGSDFETVRRVNQLVRQEEEEDAWWE
NNKNTNLSVAAPKGGGWRARSHREQEGGGEGEDNTQEQASSAGGGGGGGR
GRGGGRSGGRGGGPPPPGG
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mRNA from alignment at E-fasciculatus_F_contig13920:611..3485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13920.2880.1 ID=mRNA_E-fasciculatus_F_contig13920.2880.1|Name=mRNA_E-fasciculatus_F_contig13920.2880.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2875bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13920:611..3485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGAGGAGCTGCAGGAGATGGTGAAGAGCGTGCAGGCTGTGCTGGGGGG
CACGGAGGAGCCCGGCGGGCTCGGGGAAGGGTTCGTGGAGGCGTGCTTGT
CGGTGCTAGGGTGGTCGCCACAGGTGTGTTTTGTGTGTTTTGTGCGAGCA
TCGACCGCGCTGTGTAACCGACTGACCAATCAAAAAACGTCGTTCTTCCG
GCGGGATAAAACCACACAAACGCTGCTTTGCGTGCGTGTGTGTTTCGTCG
GCTGTTGTATCTAGTGCCAAACGTTCGTTCTGAGGTACTGCACCGGCCGC
GTGTGTAGGGAGTATGCCGTTTTAGCCGCCCGAGCCGTTGTTTGGTCGCC
GTGGTTGCCTCGCCGTTCGGATGGCCGCTAGTCGCCACCTCCCCAGTGGA
TGGACCTCTTTTGCTGTCAAGCACGAAACGATCAACGTAGCCAGTTGGAA
ACAGTCTTAGGACCAGAAGTACACGCGAAGCACAGCCTCCATGCCTTCAT
AAGAACGAGTAGTCCCTACAGCTGCGTTCAACATGTACTGCGCATGTTTT
CATTTTGTTTTTTCTAACATAGCGAAATCATCTCTTCCACAGACAAAGAG
TCCGGGATAGAATAATTAAGAATACAAGTCGTGTTGTAATGTGATGACCA
ACTTGCTTTCATACATCTGGCTCCTTTCAATCTGTCCCGCCCCTTCTGTG
TTGGTTGCACGCCTCTCCTCTCCCAGGGCGTGATCGAGGCTGTCCTGGAG
GACCGGTTGCCACCACAGGTCGCCGGCCTTAACCGCGGCCTACGGCGGGC
GTGGAAGGTGATCAAGCGGAAGCCGTACAATCATGTAAAATAGCTGAAAT
GCGCACTCTGCCCGGGGCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTTTTTTGTGCCCTTTTGCCTTTCCTGCACGCTAGTGCTTGT
GGTCATTACTCTGCCGGCCAAACAGGCGGCGAAATCATTGACATGGTGGT
CCAATTTCTTCGCGTACTAGCCAGAGGGGAGTTTCTTCTTTTTTTTTTCT
GGTCTGAAAATGTACGTCCAAAAGACTACCCGTTCTTTTTTTCCCTTCTG
CTGTTGTGATTCCTTCTGCATATCTATGTCTGTCTCAGAGCTCTCCCCGC
CTCCGTTCCGCCGCTTCTTTTATCAGAGCAAGAAGGGAGACTTGGACAAG
GCCTACCGCGTGGACAAGGACCTGGCTGCGGCAGAGGCGAAGCGGCTCAT
CGCCATGGAGAAGCGGCAAGAGGATGACGCCTACCTCCTCTCGAGGGAGT
ACGACGACGACTATGACGATCAGGTATGCACGTTGGTGGTGGCAATGGGC
TGTGGACATTGGCGTTATTATTGGTCCATGTGTAGCGATGTTCAGGTGTG
TTGGTAGTGGTGGTGTGATGGTATTGGCTGTTGATATAGGCTAAATCAGT
CCACGTGTAAGTAACGATGTTGCTGCTGTATGAGACAGACAGACAGCATC
CATAGACCGATAATGAGTTGGTTTGGCACAATTCGCGCACTGACGGTGCT
GTGTGTGTACGCCGGTGCGCTTGTGTCACGATATGTATGTGGGGAGAGGC
AGACGACCCGTGTTTTCTTGTGGCCGTGGTGTTTGGTCAATCGATGCGTC
TGTCTCTGAGCGGTAGGTGCGGACACCCGTCTCTAGTTGTTGTTGTTACT
TAGCGATATCTCATGAGCATGTCCCCGAAACAGGATCTCCCCATTCTTCT
CATGTTGCTGCCGTGCTGCGGTGCTTGTTTGTAGCCCCTCGCGTTCTTCA
TGCGTGACTGCTGAGAAAGTATTCACAACAAGGCGGGAGTCAGCCTACAA
TACCTGACGTACAACTTTATTTTCCGGAACCCTAGTACACAACACCTTTT
CTTTTCCGGGACGCTTACCGTAGTACGTTAACACTGTAATTGGCGACCAA
ACGCTCTACCCTTACGTGGTATCTGCTGCTACACAATTGCTGTTTTTGTG
AAGTATGATGACCGCGAGGTCGATGTGGGCGGCGGCGGCGGCCGCGGGTC
CGACTTCGAGACGGTGCGGAGGGTCAACCAGCTGGTTCGGCAGGAGGAGG
AGGAGGACGCCTGGTGGGAGAACAACAAGAACACAAACCTCAGGTTAGTG
GTTAGTCTCCGGTCCCACATGGTAGCCTACAAAGCCGGTGTTTCCGTGCA
CGAGAACAACACAGGAACACTAACTCTCCGGTTCCACCTGGTATCTTGCA
ACCCGCGTGTTTCTGTGCGCGTCCGAGTTGGGTGTGTTCCGTCCTTTTGT
TTGTGATCACCAATCTTGTTGGGTGTTACCGCTATGATGTCGGTTTTGTT
TTTTTGGCCGGCGTAAGCGGGTCGTGGCGTGTTGGCCGGGGCACGCCTGC
TTGCCTGTCCTGCATCACCACACACACGAACGTTGGTTGATAAGGGGGCC
TTCTTCTGCTGCTGCACTTGCGTTCAGCCGATGATGGCAGACATCTGGCA
ACGAAACTCCTACACGCCTCTGCAACAGTTTGGGGGCGTTTTTGTGTCAT
CGGCCAGCCGGTCGGTGTCACCGTTCCCAGATAAAAACTGAAAGAGCACA
GCGGCAGTGCTTATTACATACCCACACGAGTGCACGGTGCACGCCCTGCC
ACCCCCCCCCCCCTCTGAATCTCTCTCGACGCTCTCCGCAGTGTCGCCGC
TCCTAAGGGCGGCGGATGGCGAGCAAGGAGCCACCGAGAACAAGAAGGAG
GAGGAGAGGGAGAGGACAACACCCAAGAGCAAGCTTCTTCTGCCGGTGGG
GGAGGCGGCGGCGGTCGCGGCCGCGGCGGCGGGAGATCAGGCGGGCGGGG
CGGCGGACCACCACCCCCAGGGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13920:611..3485+

>mRNA_E-fasciculatus_F_contig13920.2880.1 ID=mRNA_E-fasciculatus_F_contig13920.2880.1|Name=mRNA_E-fasciculatus_F_contig13920.2880.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1314bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13920:611..3485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGAAGAGCGTGCAGGCTGTGCTGGGGGGCACGGAGGAGCCCGGCGG
GCTCGGGGAAGGGTTCGTGGAGGCGTGCTTGTCGGTGCTAGGGTGGTCGC
CACAGATGGTGAAGAGCGTGCAGGCTGTGCTGGGGGGCACGGAGGAGCCC
GGCGGGCTCGGGGAAGGGTTCGTGGAGGCGTGCTTGTCGGTGCTAGGGTG
GTCGCCACAGGGCGTGATCGAGGCTGTCCTGGAGGACCGGTTGCCACCAC
AGGTCGCCGGCCTTAACCGCGGCCTACGGCGGGCGTGGAAGGGCGTGATC
GAGGCTGTCCTGGAGGACCGGTTGCCACCACAGGTCGCCGGCCTTAACCG
CGGCCTACGGCGGGCGTGGAAGAGCAAGAAGGGAGACTTGGACAAGGCCT
ACCGCGTGGACAAGGACCTGGCTGCGGCAGAGGCGAAGCGGCTCATCGCC
ATGGAGAAGCGGCAAGAGGATGACGCCTACCTCCTCTCGAGGGAGTACGA
CGACGACTATGACGATCAGAGCAAGAAGGGAGACTTGGACAAGGCCTACC
GCGTGGACAAGGACCTGGCTGCGGCAGAGGCGAAGCGGCTCATCGCCATG
GAGAAGCGGCAAGAGGATGACGCCTACCTCCTCTCGAGGGAGTACGACGA
CGACTATGACGATCAGTATGATGACCGCGAGGTCGATGTGGGCGGCGGCG
GCGGCCGCGGGTCCGACTTCGAGACGGTGCGGAGGGTCAACCAGCTGGTT
CGGCAGGAGGAGGAGGAGGACGCCTGGTGGGAGAACAACAAGAACACAAA
CCTCAGTATGATGACCGCGAGGTCGATGTGGGCGGCGGCGGCGGCCGCGG
GTCCGACTTCGAGACGGTGCGGAGGGTCAACCAGCTGGTTCGGCAGGAGG
AGGAGGAGGACGCCTGGTGGGAGAACAACAAGAACACAAACCTCAGTGTC
GCCGCTCCTAAGGGCGGCGGATGGCGAGCAAGGAGCCACCGAGAACAAGA
AGGAGGAGGAGAGGGAGAGGACAACACCCAAGAGCAAGCTTCTTCTGCCG
GTGGGGGAGGCGGCGGCGGTCGCGGCCGCGGCGGCGGGAGATCAGGCGGG
CGGGGCGGCGGACCACCACCCCCAGGGGGCTGTCGCCGCTCCTAAGGGCG
GCGGATGGCGAGCAAGGAGCCACCGAGAACAAGAAGGAGGAGGAGAGGGA
GAGGACAACACCCAAGAGCAAGCTTCTTCTGCCGGTGGGGGAGGCGGCGG
CGGTCGCGGCCGCGGCGGCGGGAGATCAGGCGGGCGGGGCGGCGGACCAC
CACCCCCAGGGGGC
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