mRNA_E-fasciculatus_F_contig1392.2877.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1392.2877.1
Unique NamemRNA_E-fasciculatus_F_contig1392.2877.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1392.2877.1 vs. uniprot
Match: D7FZC7_ECTSI (MinC_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC7_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 3.590e-83
Identity = 157/228 (68.86%), Postives = 161/228 (70.61%), Query Frame = 1 
Query:    1 MREALQGPGALGTTGLFPGAGSPVVLDLGAVSQDGSPHGRPAGRASLAGCSRAVRAAGLVPVGVCNASHDVLKTASEQGLPEVMMLHARPRSPPSQGAATRLPRNQRAEQPVPVRASDAAESVVQKPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSHSGRSESGNSLSEEGGGRETMVYQGSVRSGQQVFAEGTSLVVLG 684
            MREALQGPG LGTTGLFPGAGSPVVLDLGAVSQDGSPHGRPAGRASLAGCSRAVRAAGLVPVGVCNASHDVLKTASEQGLPEVMM+HARPRS P Q AA+R  RN  AEQPVPVRASDAAESVV+ PPS                                                     NSHS RS  G+SLSEE  GRETMVYQGSVRSGQQVFAEGTSLVVLG
Sbjct:    1 MREALQGPGVLGTTGLFPGAGSPVVLDLGAVSQDGSPHGRPAGRASLAGCSRAVRAAGLVPVGVCNASHDVLKTASEQGLPEVMMVHARPRSSPPQVAASRSTRNHGAEQPVPVRASDAAESVVKTPPSAAPSGTSAPAPTRTSALGEGEEGRRRGGGSCSVVEPAPATTGEQEEDR-----NSHSERS--GSSLSEEESGRETMVYQGSVRSGQQVFAEGTSLVVLG 221
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BLAST of mRNA_E-fasciculatus_F_contig1392.2877.1 vs. uniprot
Match: A0A6H5JAT5_9PHAE (MinC_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT5_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 5.680e-73
Identity = 145/224 (64.73%), Postives = 149/224 (66.52%), Query Frame = 1 
Query:    1 MREALQGPGALGTTGLFPGAGSPVVLDLGAVSQDGSPHGRPAGRASLAGCSRAVRAAGLVPVGVCNASHDVLKTASEQGLPEVMMLHARPRSPPSQGAATRLPRNQRAEQPVPVRASDAAESVVQKPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSHSGRSESGNSLSEEGGGRETMVYQGSVRSGQQVFAEGTSL 672
            MREALQGPGALGTTGLFPGAGSPVVLDLGAVSQDGSPHGRPAGRASLAGCSRAVRAAGLVPVGV NASHDVLKTASEQGLPE+MM+HARPRS P Q AA+R  RN   EQ VPVRASDAAESV Q PPS                                                        +    SG SLSEEG  RETMVYQGSVRSGQQVFAEGTSL
Sbjct:  151 MREALQGPGALGTTGLFPGAGSPVVLDLGAVSQDGSPHGRPAGRASLAGCSRAVRAAGLVPVGVSNASHDVLKTASEQGLPELMMVHARPRSSPPQVAASRSTRNHSVEQTVPVRASDAAESVAQMPPSAAPSGASAPAPSTTAASGEGEEGRRKGGSPCSGAAPAPA-----------------TDSEGSGTSLSEEGSDRETMVYQGSVRSGQQVFAEGTSL 357
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1392.2877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZC7_ECTSI3.590e-8368.86MinC_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JAT5_9PHAE5.680e-7364.73MinC_C domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1392contigE-fasciculatus_F_contig1392:152..2215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.7
Seed ortholog evalue1.7e-67
Seed eggNOG ortholog2880.D7FZC7
EggNOG free text desc.Septum formation inhibitor MinC, C-terminal domain
EggNOG OGs2RYK0@2759,COG0850@1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSeptum formation inhibitor MinC
Ec32 orthologEc-07_001750.1
Exons4
Model size732
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1392.2877.1prot_E-fasciculatus_F_contig1392.2877.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1392 152..2215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927883.7335272-CDS-E-fasciculatus_F_contig1392:151..2351622927883.7335272-CDS-E-fasciculatus_F_contig1392:151..235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1392 152..235 -
1695995737.139753-CDS-E-fasciculatus_F_contig1392:151..2351695995737.139753-CDS-E-fasciculatus_F_contig1392:151..235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1392 152..235 -
1622927883.7451208-CDS-E-fasciculatus_F_contig1392:633..10351622927883.7451208-CDS-E-fasciculatus_F_contig1392:633..1035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1392 634..1035 -
1695995737.1516984-CDS-E-fasciculatus_F_contig1392:633..10351695995737.1516984-CDS-E-fasciculatus_F_contig1392:633..1035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1392 634..1035 -
1622927883.7578192-CDS-E-fasciculatus_F_contig1392:1600..17471622927883.7578192-CDS-E-fasciculatus_F_contig1392:1600..1747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1392 1601..1747 -
1695995737.161766-CDS-E-fasciculatus_F_contig1392:1600..17471695995737.161766-CDS-E-fasciculatus_F_contig1392:1600..1747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1392 1601..1747 -
1622927883.7695951-CDS-E-fasciculatus_F_contig1392:2116..22151622927883.7695951-CDS-E-fasciculatus_F_contig1392:2116..2215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1392 2117..2215 -
1695995737.1716297-CDS-E-fasciculatus_F_contig1392:2116..22151695995737.1716297-CDS-E-fasciculatus_F_contig1392:2116..2215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1392 2117..2215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1392.2877.1

>prot_E-fasciculatus_F_contig1392.2877.1 ID=prot_E-fasciculatus_F_contig1392.2877.1|Name=mRNA_E-fasciculatus_F_contig1392.2877.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=244bp
MREALQGPGALGTTGLFPGAGSPVVLDLGAVSQDGSPHGRPAGRASLAGC
SRAVRAAGLVPVGVCNASHDVLKTASEQGLPEVMMLHARPRSPPSQGAAT
RLPRNQRAEQPVPVRASDAAESVVQKPPSPAPSSMSAPAQTATAVLGEGE
EGRDRDGSACSGVAPAAATTGEEQGEGEEEERNSHSGRSESGNSLSEEGG
GRETMVYQGSVRSGQQVFAEGTSLVVLGAVSSGGEVGSMYCGR*
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mRNA from alignment at E-fasciculatus_F_contig1392:152..2215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1392.2877.1 ID=mRNA_E-fasciculatus_F_contig1392.2877.1|Name=mRNA_E-fasciculatus_F_contig1392.2877.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2064bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1392:152..2215- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGGAGGCGTTGCAGGGGCCCGGGGCGCTAGGAACGACCGGGCTGTT
CCCAGGGGCGGGGTCTCCGGTGGTGCTCGATCTGGGCGCCGTGTCTCAGG
TGATATATCTGGAAGAGGGCGTTCATGTGGCTCTCCTTCTTTGTACCACA
CGGCGGCGAGCGTTTGTCGAAGCCTATAAAACGCCAACAGCACCGACAAG
TCGACGGGTGACGATCGCAGGGCACATTGCCGTACGCATAACGGTACTAA
CTGCGTTGAGAGGATGTTGGATAATGGCTTCGCACGTAAGCTTCTCCCGG
ACCAACCTCTGGTCCATCCTTGTGAAACGTACAATAGCCTGGGCCGGCGA
ATATCACCGTATACCGCTTTTTCTCGTAGACGAGGTCAGTGGTCTAACGA
CTATTGTATGCATATGGCGTGCCTCTACACGAGTACACCCCTTCTTCCCC
CGAAACCCGCATCGGCAGGACGGGTCGCCGCACGGCCGACCAGCTGGGCG
CGCCAGCCTTGCCGGCTGCTCGCGAGCTGTGAGGGCGGCGGGACTCGTGC
CGGTTGGGGTTTGCAACGCTAGCCACGACGTGTTGAAGACGGCCTCAGAG
CAGGGGTTGCCGGAGGTACGTACAGCAGTAGGTCTTGTTTCGATTTTTTT
CGGCGTGTTTCCTTTGTGTGTACTATGTTTACAAAAGATGTTTTACGACG
CCTTCCGCTCTGTGCTTGATGTTACTAGCTGCTTGTTTCCGACCTCCTTG
TCCTCTTCGTAGACCGAAAGAAGCGCGATCGTAAGTATTAGCTTTGTTTA
CCGGGGGGGGCGCTTGAGGCGGAAAACCTTCATCCCGTTGGACGGGATAT
CAAGGGACCGGTAGAATGCCCTCGATCTACAAACTTTGGTGATTTTTTTC
TCGCAGGCGTCTTTTTTCATGCAGTAGGGGTCCTCGAGTATGGCGGTCTG
AACAAGGCGGTGGTCCTGTATAATACTAAGGCCGGTGAAATTGGCTGGCA
TCGAGGGAAAAATCAAAGTTGTTCTACACATTGAATAAGGCGGCTGCACC
ATGTAAGGCGGTCATCATCAACCGCACCGCCTTACTCAGGGACCGCAACT
GCTGTACCGTCAGCCACTTGAAGGCCTCCCCTACTCTCGCGGGCGTTGAT
CTCTCCGCGCCGACCCGCGATTCTTGGCAGGTGATGATGTTGCACGCCAG
GCCACGATCACCGCCGTCTCAGGGCGCCGCCACACGATTGCCGAGGAATC
AGAGGGCAGAGCAGCCAGTGCCGGTTCGGGCCTCCGATGCGGCGGAATCG
GTGGTGCAAAAGCCTCCGTCCCCGGCGCCTTCCAGTATGTCGGCACCGGC
GCAAACGGCGACTGCGGTGTTGGGGGAAGGGGAGGAGGGGCGAGATAGAG
ATGGGAGTGCGTGCAGCGGCGTGGCACCCGCAGCAGCGACAACTGGAGAA
GAGCAGGGGGAGGGGGAGGAAGAGGAGCGAAATAGCCATAGCGGGCGTTC
GGAGAGCGGGAACAGTTTGAGCGAGGAGGGCGGGGGGCGAGAAACGATGG
TGTATCAAGGGTCTGTTCGGAGCGGGCAGCAGGTGAGGTTAGGCGCAGCC
GTCGCGCGGACGGTGTCATCGTCGTAGTTGTTGTTGTTTGGTAGGCTGGT
GGTGTTAGTGATGATAGTTCGCCCATTTGTCACCGCACAATGATAGAGCA
ATGTGTTTTGCTTTCTATGGGAAGAATCACCGTCTATCAGTCTCCACCCC
TTCCACAGTGCTCTTTCTTGCGACTGTCCCCCCTCAGCTGCTACCTGCTC
CCGTGTCTGACTTCGGCGATCTCCTCGTTTCTGTTGTCCTCCCAACGCCC
GCCTGAAACATCCTCACACCGTACGTGCTCGCAAGCACATTGTTTTTCAT
CATCAAGATCCCCTGCCCCACCTCAACCAATCGCATACCTGCTGTGCAAC
ATCAACGTTATGATCTTACCGCTATTGTAGGTTTTTGCGGAGGGAACCTC
GCTTGTGGTCCTGGGTGCTGTTAGCTCAGGCGGCGAGGTGGGTTCGATGT
ATTGCGGGAGGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1392:152..2215-

>mRNA_E-fasciculatus_F_contig1392.2877.1 ID=mRNA_E-fasciculatus_F_contig1392.2877.1|Name=mRNA_E-fasciculatus_F_contig1392.2877.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1392:152..2215- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGGAGGCGTTGCAGGGGCCCGGGGCGCTAGGAACGACCGGGCTGTT
CCCAGGGGCGGGGTCTCCGGTGGTGCTCGATCTGGGCGCCGTGTCTCAGA
TGAGGGAGGCGTTGCAGGGGCCCGGGGCGCTAGGAACGACCGGGCTGTTC
CCAGGGGCGGGGTCTCCGGTGGTGCTCGATCTGGGCGCCGTGTCTCAGGA
CGGGTCGCCGCACGGCCGACCAGCTGGGCGCGCCAGCCTTGCCGGCTGCT
CGCGAGCTGTGAGGGCGGCGGGACTCGTGCCGGTTGGGGTTTGCAACGCT
AGCCACGACGTGTTGAAGACGGCCTCAGAGCAGGGGTTGCCGGAGGACGG
GTCGCCGCACGGCCGACCAGCTGGGCGCGCCAGCCTTGCCGGCTGCTCGC
GAGCTGTGAGGGCGGCGGGACTCGTGCCGGTTGGGGTTTGCAACGCTAGC
CACGACGTGTTGAAGACGGCCTCAGAGCAGGGGTTGCCGGAGGTGATGAT
GTTGCACGCCAGGCCACGATCACCGCCGTCTCAGGGCGCCGCCACACGAT
TGCCGAGGAATCAGAGGGCAGAGCAGCCAGTGCCGGTTCGGGCCTCCGAT
GCGGCGGAATCGGTGGTGCAAAAGCCTCCGTCCCCGGCGCCTTCCAGTAT
GTCGGCACCGGCGCAAACGGCGACTGCGGTGTTGGGGGAAGGGGAGGAGG
GGCGAGATAGAGATGGGAGTGCGTGCAGCGGCGTGGCACCCGCAGCAGCG
ACAACTGGAGAAGAGCAGGGGGAGGGGGAGGAAGAGGAGCGAAATAGCCA
TAGCGGGCGTTCGGAGAGCGGGAACAGTTTGAGCGAGGAGGGCGGGGGGC
GAGAAACGATGGTGTATCAAGGGTCTGTTCGGAGCGGGCAGCAGGTGATG
ATGTTGCACGCCAGGCCACGATCACCGCCGTCTCAGGGCGCCGCCACACG
ATTGCCGAGGAATCAGAGGGCAGAGCAGCCAGTGCCGGTTCGGGCCTCCG
ATGCGGCGGAATCGGTGGTGCAAAAGCCTCCGTCCCCGGCGCCTTCCAGT
ATGTCGGCACCGGCGCAAACGGCGACTGCGGTGTTGGGGGAAGGGGAGGA
GGGGCGAGATAGAGATGGGAGTGCGTGCAGCGGCGTGGCACCCGCAGCAG
CGACAACTGGAGAAGAGCAGGGGGAGGGGGAGGAAGAGGAGCGAAATAGC
CATAGCGGGCGTTCGGAGAGCGGGAACAGTTTGAGCGAGGAGGGCGGGGG
GCGAGAAACGATGGTGTATCAAGGGTCTGTTCGGAGCGGGCAGCAGGTTT
TTGCGGAGGGAACCTCGCTTGTGGTCCTGGGTGCTGTTAGCTCAGGCGGC
GAGGTGGGTTCGATGTATTGCGGGAGGTAGGTTTTTGCGGAGGGAACCTC
GCTTGTGGTCCTGGGTGCTGTTAGCTCAGGCGGCGAGGTGGGTTCGATGT
ATTGCGGGAGGTAG
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