prot_E-fasciculatus_F_contig13918.2876.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig13918.2876.1
Unique Nameprot_E-fasciculatus_F_contig13918.2876.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length112
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13918.2876.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.370e-8
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 0 
Query:   28 MGWLTAIASVTLATV----SFGWLALLWRFWAMRNTFDIRARSPELVMVSMFTEFIVAVSVLLHWFLLSIHKSLPCVVIFVVSYA 108
            MGW     +V+L  V    S  W+ LL R   +R+ F+I ARSP+LV+++ FT +++++SV++ W LL +  ++PC V+  VSYA
Sbjct:    1 MGWGAWSCAVSLGAVAAVGSVVWIGLLVRLHVLRHEFEIAARSPQLVILTGFTCYLLSLSVVVQWMLLCVGTNIPCWVVIWVSYA 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13918.2876.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0L8_9PHAE2.370e-840.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..90
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..49
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 91..111
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..68
NoneNo IPR availableTMHMMTMhelixcoord: 28..50
NoneNo IPR availableTMHMMTMhelixcoord: 69..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13918contigE-fasciculatus_F_contig13918:2705..3040 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13918.2876.1mRNA_E-fasciculatus_F_contig13918.2876.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig13918 2705..3040 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig13918.2876.1 ID=prot_E-fasciculatus_F_contig13918.2876.1|Name=mRNA_E-fasciculatus_F_contig13918.2876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
GAPPYPRRISRRFVAAPNANAAPDPSPMGWLTAIASVTLATVSFGWLALL
WRFWAMRNTFDIRARSPELVMVSMFTEFIVAVSVLLHWFLLSIHKSLPCV
VIFVVSYACES*
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