mRNA_E-fasciculatus_F_contig13918.2876.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13918.2876.1
Unique NamemRNA_E-fasciculatus_F_contig13918.2876.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13918.2876.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.370e-8
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   82 MGWLTAIASVTLATV----SFGWLALLWRFWAMRNTFDIRARSPELVMVSMFTEFIVAVSVLLHWFLLSIHKSLPCVVIFVVSYA 324
            MGW     +V+L  V    S  W+ LL R   +R+ F+I ARSP+LV+++ FT +++++SV++ W LL +  ++PC V+  VSYA
Sbjct:    1 MGWGAWSCAVSLGAVAAVGSVVWIGLLVRLHVLRHEFEIAARSPQLVILTGFTCYLLSLSVVVQWMLLCVGTNIPCWVVIWVSYA 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13918.2876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0L8_9PHAE2.370e-840.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13918contigE-fasciculatus_F_contig13918:2705..3040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927883.702267-CDS-E-fasciculatus_F_contig13918:2704..30401622927883.702267-CDS-E-fasciculatus_F_contig13918:2704..3040Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13918 2705..3040 +
1695995737.1302907-CDS-E-fasciculatus_F_contig13918:2704..30401695995737.1302907-CDS-E-fasciculatus_F_contig13918:2704..3040Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13918 2705..3040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13918.2876.1prot_E-fasciculatus_F_contig13918.2876.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13918 2705..3040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13918.2876.1

>prot_E-fasciculatus_F_contig13918.2876.1 ID=prot_E-fasciculatus_F_contig13918.2876.1|Name=mRNA_E-fasciculatus_F_contig13918.2876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
GAPPYPRRISRRFVAAPNANAAPDPSPMGWLTAIASVTLATVSFGWLALL
WRFWAMRNTFDIRARSPELVMVSMFTEFIVAVSVLLHWFLLSIHKSLPCV
VIFVVSYACES*
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mRNA from alignment at E-fasciculatus_F_contig13918:2705..3040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13918.2876.1 ID=mRNA_E-fasciculatus_F_contig13918.2876.1|Name=mRNA_E-fasciculatus_F_contig13918.2876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13918:2705..3040+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGCACCGCCGTATCCTAGGCGCATTTCTCGCCGTTTTGTGGCAGCCCC
GAACGCCAACGCTGCACCCGACCCGAGTCCGATGGGCTGGTTGACCGCAA
TCGCCTCTGTGACACTGGCTACCGTGTCTTTCGGGTGGCTTGCCTTGTTG
TGGCGGTTTTGGGCGATGAGAAACACGTTCGACATCAGGGCGAGGTCACC
AGAGTTGGTGATGGTCAGCATGTTCACGGAGTTCATCGTGGCCGTCTCAG
TGCTGCTGCACTGGTTCCTGCTGAGCATACACAAAAGCTTACCGTGCGTG
GTTATCTTCGTCGTCTCCTACGCCTGTGAGTCGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13918:2705..3040+

>mRNA_E-fasciculatus_F_contig13918.2876.1 ID=mRNA_E-fasciculatus_F_contig13918.2876.1|Name=mRNA_E-fasciculatus_F_contig13918.2876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13918:2705..3040+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGCACCGCCGTATCCTAGGCGCATTTCTCGCCGTTTTGTGGCAGCCCC
GAACGCCAACGCTGCACCCGACCCGAGTCCGATGGGCTGGTTGACCGCAA
TCGCCTCTGTGACACTGGCTACCGTGTCTTTCGGGTGGCTTGCCTTGTTG
TGGCGGTTTTGGGCGATGAGAAACACGTTCGACATCAGGGCGAGGTCACC
AGAGTTGGTGATGGTCAGCATGTTCACGGAGTTCATCGTGGCCGTCTCAG
TGCTGCTGCACTGGTTCCTGCTGAGCATACACAAAAGCTTACCGTGCGTG
GTTATCTTCGTCGTCTCCTACGCCTGTGAGTCGTAGGGGGCACCGCCGTA
TCCTAGGCGCATTTCTCGCCGTTTTGTGGCAGCCCCGAACGCCAACGCTG
CACCCGACCCGAGTCCGATGGGCTGGTTGACCGCAATCGCCTCTGTGACA
CTGGCTACCGTGTCTTTCGGGTGGCTTGCCTTGTTGTGGCGGTTTTGGGC
GATGAGAAACACGTTCGACATCAGGGCGAGGTCACCAGAGTTGGTGATGG
TCAGCATGTTCACGGAGTTCATCGTGGCCGTCTCAGTGCTGCTGCACTGG
TTCCTGCTGAGCATACACAAAAGCTTACCGTGCGTGGTTATCTTCGTCGT
CTCCTACGCCTGTGAGTCGTAG
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