mRNA_E-fasciculatus_F_contig13916.2874.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13916.2874.1
Unique NamemRNA_E-fasciculatus_F_contig13916.2874.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13916.2874.1 vs. uniprot
Match: D8LNG2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG2_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 1.440e-80
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 1 
Query:    1 AVERARLLRDVSRAVNDRQQREADEYIEAHAAERDVERRSNRKRITIAVCIPMTSRGTLMDSPYDSPVWNHAFGTFLSSTNFRHPSRFRFHWYFGFDAGDPIYDTAGAAAHLNKQFGKLAIEEFGMQGLTAMDAEHLWRDGSLRLKTKRYMGME 462
            AVERARLLRDVSRAVN RQQREADEYIEA  AERD ERR+NRKRITIAVCIPMTSRGTLM+SPYDSPVW HAF TFLSST+F HP RFRFHWYFGFDAGDPIYD AGAAAHL+KQFGKLAIEEF  QGLTA D EH WRDGSLRLK K Y+GME
Sbjct:  298 AVERARLLRDVSRAVNYRQQREADEYIEA--AERDAERRNNRKRITIAVCIPMTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHP-RFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDGSLRLKAKHYLGME 448
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BLAST of mRNA_E-fasciculatus_F_contig13916.2874.1 vs. uniprot
Match: A0A6V1PYQ3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PYQ3_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 2.050e-11
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 1 
Query:    1 AVERARLLRDVSRAVNDRQQREADEYIEAHAAERDVERRSNR-KRITIAVCIPMTSRGTLMDSPYDSPVWNHAFGTFLSSTNFRHPSRFRFHWYFGFDAGDPIYDTAGAAAHLNKQFGKLAIEEFGMQGLTAMDAE 405
            AV  A  LRD+S  +N   + E ++YI  HA+    E+ +   +  +IA+ IPMTS+GT M S  +SP W + F TF  S ++   +R +F ++ GFD GDPIYD   +     K+F   A    G+   T M  E
Sbjct:   61 AVTTAIRLRDMSSHINRLHRNETEKYIMKHASHYQKEQITETIQTASIAIIIPMTSKGTEMTSVKESPFWFNTFQTFCYSIDWA-ANRNKFTFFIGFDKGDPIYDLGDSWNDFRKEFKSNA--GMGISWQTGMSPE 193
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BLAST of mRNA_E-fasciculatus_F_contig13916.2874.1 vs. uniprot
Match: A0A7S2MG38_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MG38_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.750e-10
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:  139 IAVCIPMTSRGTLMDSPYDSPVWNHAFGTFLSSTNFRHPSRFRFHWYFGFDAGDPIYDTAGAAAHLNKQFGK 354
            +A+C+PMTS+GT M +   SP W + F +F+ S ++   +   F +Y GFD GDP+YDT  A   + + FGK
Sbjct:   12 VALCVPMTSKGTDMVTVDQSPFWFNLFASFMESIDWE-KNEIEFSFYLGFDRGDPLYDTGDAWGEIRRTFGK 82
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BLAST of mRNA_E-fasciculatus_F_contig13916.2874.1 vs. uniprot
Match: A0A6H5JLE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.970e-5
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:    1 AVERARLLRDVSRAVNDRQQREADEYIEA 87
            AVERARLLRDVSRAVNDRQQREADEYI+A
Sbjct:  314 AVERARLLRDVSRAVNDRQQREADEYIKA 342
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13916.2874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNG2_ECTSI1.440e-8086.36Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6V1PYQ3_HETAK2.050e-1136.76Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2MG38_9STRA5.750e-1041.67Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5JLE1_9PHAE1.970e-596.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13916contigE-fasciculatus_F_contig13916:391..2025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue4.5e-66
Seed eggNOG ortholog2880.D8LNG2
EggNOG OGs2E2MC@1,2S9UJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003030.2
Exons4
Model size462
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13916.2874.1prot_E-fasciculatus_F_contig13916.2874.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13916 391..2025 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927883.6324015-CDS-E-fasciculatus_F_contig13916:390..4861622927883.6324015-CDS-E-fasciculatus_F_contig13916:390..486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 391..486 -
1695995737.0864031-CDS-E-fasciculatus_F_contig13916:390..4861695995737.0864031-CDS-E-fasciculatus_F_contig13916:390..486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 391..486 -
1622927883.6444585-CDS-E-fasciculatus_F_contig13916:844..9351622927883.6444585-CDS-E-fasciculatus_F_contig13916:844..935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 845..935 -
1695995737.1028407-CDS-E-fasciculatus_F_contig13916:844..9351695995737.1028407-CDS-E-fasciculatus_F_contig13916:844..935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 845..935 -
1622927883.6541803-CDS-E-fasciculatus_F_contig13916:1171..13561622927883.6541803-CDS-E-fasciculatus_F_contig13916:1171..1356Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 1172..1356 -
1695995737.1127238-CDS-E-fasciculatus_F_contig13916:1171..13561695995737.1127238-CDS-E-fasciculatus_F_contig13916:1171..1356Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 1172..1356 -
1622927883.6703305-CDS-E-fasciculatus_F_contig13916:1935..20251622927883.6703305-CDS-E-fasciculatus_F_contig13916:1935..2025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 1936..2025 -
1695995737.12128-CDS-E-fasciculatus_F_contig13916:1935..20251695995737.12128-CDS-E-fasciculatus_F_contig13916:1935..2025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 1936..2025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13916.2874.1

>prot_E-fasciculatus_F_contig13916.2874.1 ID=prot_E-fasciculatus_F_contig13916.2874.1|Name=mRNA_E-fasciculatus_F_contig13916.2874.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=154bp
AVERARLLRDVSRAVNDRQQREADEYIEAHAAERDVERRSNRKRITIAVC
IPMTSRGTLMDSPYDSPVWNHAFGTFLSSTNFRHPSRFRFHWYFGFDAGD
PIYDTAGAAAHLNKQFGKLAIEEFGMQGLTAMDAEHLWRDGSLRLKTKRY
MGME
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mRNA from alignment at E-fasciculatus_F_contig13916:391..2025-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13916.2874.1 ID=mRNA_E-fasciculatus_F_contig13916.2874.1|Name=mRNA_E-fasciculatus_F_contig13916.2874.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1635bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13916:391..2025- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGTTGAGCGGGCGAGGCTTCTGCGAGACGTATCGAGGGCAGTGAACGA
CAGGCAACAGCGAGAGGCCGACGAGTACATTGAGGCTCATGTAAGGATAC
CCTCTGCGAGGGCACGGCGGCCCATGCGTTGATTTCCCCCACCGAAGTTG
CCAAAGCAAAAAAAGGGACAAGCTTGTAATTTTTCTCATTTCTTACGCTA
GCCATACAATCCCCCGACTCATACAGACTTCCTCAAAACCTGTTGGTCCC
GGCGTTTGGTCATTGTCATTCATTCCCCTTCGGAACCCCAGGATGTCACC
TGTGATGCGACCAAGACTCGCGCTTCTGTTTTTGTGCGTACCGTCTCGAT
ATTCAGGGCATCTATCCCACTACACAGTGGAACCACTATTCAGCAGTACC
AGGACTTTTCTCTCTAGTGCTCCCAAGGAACGATTGCCCCATCATCGGTA
GTCGGACCTGCGGGAACAATGCTCCGTCCCCTCGAGGACACGTAGCCAAT
GCTCTACAAGTATCAACAACAAGGCCATGCGGCGGACATATGTTGTAGCT
CCCCCCCTGCCCGATCCGACATGCGCCGTCGGCGCATACTTTGACTTTAA
ACGAGTAAGGCCTACATGATCATAAGACGCCCCCCCCCACCCCGTTTTTC
ATGGTCGACCATGCGCTAGGCAGCGGAGCGCGACGTGGAGAGAAGAAGCA
ACAGGAAGAGAATAACCATCGCCGTGTGCATCCCAATGACCAGCCGGGGA
ACCTTGATGGACTCCCCCTATGACAGCCCCGTGTGGAATCACGCCTTCGG
CACGTTCCTGTCTAGCACGAACTTTAGGCACCCCAGCAGGTTCCGCTTCC
ACTGGTGAGGCGACTATTAAAAATAATCGCGAATGTTAGTGCTTCGCCCT
TCTTCTTCGTGCAGTTTGGTTCGGCTGTCGGTGGTGGTGTCAGAACGCAC
ACGCTGTCCAATCACATCCACCGGCCTTCACGCCAGGCAACCATCACACC
GTCAAATACCATTTTCTCTGCCCTGCGTTTGCCTTGCCGTAAAGAAGGTT
TTCGATGTGTGAAGTACATTTTTTTCTTTTTCCTGTGCAGGTATTTCGGG
TTTGATGCCGGCGACCCAATCTACGATACCGCTGGCGCTGCTGCACACCT
CAACAAGCAGTTTGGCAAACTTGCGATAGAGGTAAGGGAGGAGGCGCGCC
TGGTGTATGGACTCTCCCAAAGTGTGTCTTTTGATTTCCGCTAGAGCGCA
AAAGCCCCGAAAGTCCTCCAGAGAGTCGATGGCAAATGTTTCTCTAGCGT
GCCCTAAAGGACTTTTATTGCCTCCGCGTCTGTGTAGTTACTTATTGTTT
GCCACCCGTTTTGGCGTCTGCTGGCAAGTCACATGTTTGGATGGCCCGTG
TTTCGGCTAGCTTTGTAGAGAGAACTGCTCGACGCCTACAACTTCGTCCA
TCTTGGTCTTCATTTATCCATCCGTGTGACTGTCTCACTGACTGTCTGTC
TGTACTTCCATTCCTTTGTTCGTTTTTTTTTCTGAACAGGAGTTCGGAAT
GCAAGGATTGACCGCAATGGACGCTGAGCACCTCTGGCGCGACGGCAGCT
TAAGGCTCAAGACCAAGCGCTACATGGGCATGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13916:391..2025-

>mRNA_E-fasciculatus_F_contig13916.2874.1 ID=mRNA_E-fasciculatus_F_contig13916.2874.1|Name=mRNA_E-fasciculatus_F_contig13916.2874.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13916:391..2025- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGTTGAGCGGGCGAGGCTTCTGCGAGACGTATCGAGGGCAGTGAACGA
CAGGCAACAGCGAGAGGCCGACGAGTACATTGAGGCTCATGCCGTTGAGC
GGGCGAGGCTTCTGCGAGACGTATCGAGGGCAGTGAACGACAGGCAACAG
CGAGAGGCCGACGAGTACATTGAGGCTCATGCAGCGGAGCGCGACGTGGA
GAGAAGAAGCAACAGGAAGAGAATAACCATCGCCGTGTGCATCCCAATGA
CCAGCCGGGGAACCTTGATGGACTCCCCCTATGACAGCCCCGTGTGGAAT
CACGCCTTCGGCACGTTCCTGTCTAGCACGAACTTTAGGCACCCCAGCAG
GTTCCGCTTCCACTGGCAGCGGAGCGCGACGTGGAGAGAAGAAGCAACAG
GAAGAGAATAACCATCGCCGTGTGCATCCCAATGACCAGCCGGGGAACCT
TGATGGACTCCCCCTATGACAGCCCCGTGTGGAATCACGCCTTCGGCACG
TTCCTGTCTAGCACGAACTTTAGGCACCCCAGCAGGTTCCGCTTCCACTG
GTATTTCGGGTTTGATGCCGGCGACCCAATCTACGATACCGCTGGCGCTG
CTGCACACCTCAACAAGCAGTTTGGCAAACTTGCGATAGAGGTATTTCGG
GTTTGATGCCGGCGACCCAATCTACGATACCGCTGGCGCTGCTGCACACC
TCAACAAGCAGTTTGGCAAACTTGCGATAGAGGAGTTCGGAATGCAAGGA
TTGACCGCAATGGACGCTGAGCACCTCTGGCGCGACGGCAGCTTAAGGCT
CAAGACCAAGCGCTACATGGGCATGGAGGAGTTCGGAATGCAAGGATTGA
CCGCAATGGACGCTGAGCACCTCTGGCGCGACGGCAGCTTAAGGCTCAAG
ACCAAGCGCTACATGGGCATGGAG
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