mRNA_E-fasciculatus_F_contig13916.2875.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13916.2875.1
Unique NamemRNA_E-fasciculatus_F_contig13916.2875.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13916.2875.1 vs. uniprot
Match: D8LNG2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG2_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.990e-32
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    2 VGAPEVGLPEVFQMRDGMVYSEVMHGYLSCSGGGSESEVKGFVGEYLWQNEESYQLIFDQARHRS 196
            VGAPEVGLPEVFQMRDGMVYSEVMHGYLSCSG G+E+EVKGFVGEYLWQNEESYQLIFDQ  H +
Sbjct:  234 VGAPEVGLPEVFQMRDGMVYSEVMHGYLSCSGAGAEAEVKGFVGEYLWQNEESYQLIFDQVSHEA 298
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BLAST of mRNA_E-fasciculatus_F_contig13916.2875.1 vs. uniprot
Match: A0A6H5JLE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.730e-14
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2 
Query:    2 VGAPEVGLPEVFQMRDGMVYSEVMHGYLSCSGGGSE 109
            VGAPE+GLPEVFQMRDGMVYSEVMHGYLSCSG G+E
Sbjct:  274 VGAPEIGLPEVFQMRDGMVYSEVMHGYLSCSGAGAE 309
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13916.2875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNG2_ECTSI3.990e-3289.23Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JLE1_9PHAE7.730e-1491.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13916contigE-fasciculatus_F_contig13916:2457..3090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size200
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927883.5814185-CDS-E-fasciculatus_F_contig13916:2456..25451622927883.5814185-CDS-E-fasciculatus_F_contig13916:2456..2545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 2457..2545 -
1695995737.0670676-CDS-E-fasciculatus_F_contig13916:2456..25451695995737.0670676-CDS-E-fasciculatus_F_contig13916:2456..2545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 2457..2545 -
1622927883.5938935-CDS-E-fasciculatus_F_contig13916:2981..30901622927883.5938935-CDS-E-fasciculatus_F_contig13916:2981..3090Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 2982..3090 -
1695995737.0758572-CDS-E-fasciculatus_F_contig13916:2981..30901695995737.0758572-CDS-E-fasciculatus_F_contig13916:2981..3090Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13916 2982..3090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13916.2875.1prot_E-fasciculatus_F_contig13916.2875.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13916 2457..3090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13916.2875.1

>prot_E-fasciculatus_F_contig13916.2875.1 ID=prot_E-fasciculatus_F_contig13916.2875.1|Name=mRNA_E-fasciculatus_F_contig13916.2875.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
GRSARGWSAGGVPDARRYGVQRGHARLPLVLWGRFRIGGEGLRGRVLVAE
RGVVSTHLRPGKAPID
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mRNA from alignment at E-fasciculatus_F_contig13916:2457..3090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13916.2875.1 ID=mRNA_E-fasciculatus_F_contig13916.2875.1|Name=mRNA_E-fasciculatus_F_contig13916.2875.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=634bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13916:2457..3090- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTAGGAGCGCCAGAGGTTGGTCTGCCGGAGGTGTTCCAGATGCGCGACG
GTATGGTGTACAGCGAGGTCATGCACGGCTACCTCTCGTGCTCTGGGGGC
GGTTCAGAAGTGAGCAGGCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGCTGTGTTGTTCTCATTTGTGTTGTTCTCATGGCTGTGACTGCTG
CTGCTGCTGTTGGTGTTGTTTGCTGTTGCCTGCGTATGAACCTCTGATCG
TTGTCCGTCTTCATGGGCTAGCCGGTACCGAGCACAGCGTATTTGCTGCT
TACACAGCTCCCTCTTCCTCTTCCTTCGGGGTGTCTCTTTTTCATCCCGA
AGTATCTTTTTGTGTCACGTTCCTTGTTTTTGTGGCCTTGCTCTGCTCTC
CGCCGTCTTGGCTTTTCTTGCCATGTGCTTCGGCGAGCTGCTCTGCCCCT
TTTCACTCTCACTCCCCCCCCCCCCGATTCTCTCTTGTCCTCCTTGTCCT
CATCATCCTCCCCTCTCCCTTTGCCTCCCTTGACTGCTGTCGAAGTCGGA
GGTGAAGGGCTTCGTGGGAGAGTACTTGTGGCAGAACGAGGAGTCGTATC
AACTCATCTTCGACCAGGCAAGGCACCGATCGAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13916:2457..3090-

>mRNA_E-fasciculatus_F_contig13916.2875.1 ID=mRNA_E-fasciculatus_F_contig13916.2875.1|Name=mRNA_E-fasciculatus_F_contig13916.2875.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13916:2457..3090- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTAGGAGCGCCAGAGGTTGGTCTGCCGGAGGTGTTCCAGATGCGCGACG
GTATGGTGTACAGCGAGGTCATGCACGGCTACCTCTCGTGCTCTGGGGGC
GGTTCAGAAGGTAGGAGCGCCAGAGGTTGGTCTGCCGGAGGTGTTCCAGA
TGCGCGACGGTATGGTGTACAGCGAGGTCATGCACGGCTACCTCTCGTGC
TCTGGGGGCGGTTCAGAATCGGAGGTGAAGGGCTTCGTGGGAGAGTACTT
GTGGCAGAACGAGGAGTCGTATCAACTCATCTTCGACCAGGCAAGGCACC
GATCGATTCGGAGGTGAAGGGCTTCGTGGGAGAGTACTTGTGGCAGAACG
AGGAGTCGTATCAACTCATCTTCGACCAGGCAAGGCACCGATCGAT
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