mRNA_E-fasciculatus_F_contig13914.2873.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13914.2873.1
Unique NamemRNA_E-fasciculatus_F_contig13914.2873.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13914.2873.1 vs. uniprot
Match: D7FQ28_ECTSI (Similar to calcyphosine-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ28_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 1.010e-79
Identity = 135/152 (88.82%), Postives = 144/152 (94.74%), Query Frame = 1 
Query:    1 ACAENGETSADGQTSAAFLLKRWDEDDNGTLSYEELHRGLEEIGLLLSSKQRRELIRLADPDRSGGVDIKELTELLYDVKVEIAAGRSLEGEEEETVAAAAPGRMGLTTSLSTKVGFRRTGTGLRPNGLSDDAGVNDRVERLLRKRASEKWS 456
            ACAE+GET ADGQTSAAFLLKRWDEDDNG LS++ELH+GLEEIGLLLSSKQRRELIRLADPDRSGGVDIKEL ELLYDV+VEIAAGRS+EGEE+   AAAAPGRMGLTTSL+TKVGFRRTG+GLRPNGLSD  GVNDRVERLLRKRASEKWS
Sbjct:  429 ACAESGETRADGQTSAAFLLKRWDEDDNGNLSHQELHKGLEEIGLLLSSKQRRELIRLADPDRSGGVDIKELAELLYDVEVEIAAGRSVEGEEQ--AAAAAPGRMGLTTSLNTKVGFRRTGSGLRPNGLSD-GGVNDRVERLLRKRASEKWS 577
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13914.2873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ28_ECTSI1.010e-7988.82Similar to calcyphosine-like protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13914contigE-fasciculatus_F_contig13914:2385..3255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_007690.1
Exons2
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927883.5391703-CDS-E-fasciculatus_F_contig13914:2384..24971622927883.5391703-CDS-E-fasciculatus_F_contig13914:2384..2497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 2385..2497 +
1695995737.0502553-CDS-E-fasciculatus_F_contig13914:2384..24971695995737.0502553-CDS-E-fasciculatus_F_contig13914:2384..2497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 2385..2497 +
1622927883.5515828-CDS-E-fasciculatus_F_contig13914:2909..32551622927883.5515828-CDS-E-fasciculatus_F_contig13914:2909..3255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 2910..3255 +
1695995737.0586147-CDS-E-fasciculatus_F_contig13914:2909..32551695995737.0586147-CDS-E-fasciculatus_F_contig13914:2909..3255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 2910..3255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13914.2873.1prot_E-fasciculatus_F_contig13914.2873.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13914 2385..3255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13914.2873.1

>prot_E-fasciculatus_F_contig13914.2873.1 ID=prot_E-fasciculatus_F_contig13914.2873.1|Name=mRNA_E-fasciculatus_F_contig13914.2873.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=153bp
ACAENGETSADGQTSAAFLLKRWDEDDNGTLSYEELHRGLEEIGLLLSSK
QRRELIRLADPDRSGGVDIKELTELLYDVKVEIAAGRSLEGEEEETVAAA
APGRMGLTTSLSTKVGFRRTGTGLRPNGLSDDAGVNDRVERLLRKRASEK
WS*
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mRNA from alignment at E-fasciculatus_F_contig13914:2385..3255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13914.2873.1 ID=mRNA_E-fasciculatus_F_contig13914.2873.1|Name=mRNA_E-fasciculatus_F_contig13914.2873.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=871bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13914:2385..3255+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTTGCGCGGAGAACGGCGAGACAAGTGCTGATGGCCAAACTTCGGCGGC
TTTTCTTCTCAAGCGTTGGGACGAGGACGACAACGGCACCCTCAGTTACG
AGGAACTGCATAGGTGAGTTCGTTGTGGCTGTAAACGCAGCTACGGTGTG
TGCATCCCTTCTTGCAGTCAATCCGACGCGATGACGAGGTGTGCGTGGCA
GAGCTTGCCATTCGTCAGAAGCTGCGAGCAACTGTGCGAAACCGAGGGGT
AGACAGAGTGGATTAGAGGGCTAGTGTTGCTACAGTAGGTGGATAGAAAC
AGTTTTAGTGCTTCTCCGCCTGCATACGTTTGCATACCATTCCCTTGATA
TCAACAAAGAGGACCACGTTCTTTCTTTCCCCTGTGACGCCGGTCTCGTT
CCAAAACGGATCCCGAACCCCCCCCCATGTTCGGTGCCCCCTCCCCCCTT
CCCCGCCCCTTCCTACGTTGCGTGCCGACGCTTGTGACTCTGAATGGCAA
CGGCACGGCGGTACCTTGAACATAGGGGTCTGGAGGAAATCGGCCTCCTT
CTCTCCAGCAAACAACGGCGCGAGTTGATTCGCCTCGCGGACCCGGACAG
GAGCGGTGGCGTGGATATCAAGGAGCTGACTGAGCTGCTCTACGACGTTA
AGGTCGAGATAGCGGCGGGACGAAGCTTAGAAGGAGAAGAAGAAGAGACC
GTGGCGGCGGCAGCGCCAGGACGCATGGGACTGACCACCAGTTTAAGCAC
GAAGGTCGGCTTCCGTAGGACAGGCACCGGATTGCGTCCCAACGGTTTGT
CTGACGACGCTGGCGTGAATGACAGGGTGGAGCGTTTGCTGCGGAAGAGG
GCGTCAGAGAAGTGGTCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13914:2385..3255+

>mRNA_E-fasciculatus_F_contig13914.2873.1 ID=mRNA_E-fasciculatus_F_contig13914.2873.1|Name=mRNA_E-fasciculatus_F_contig13914.2873.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=918bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13914:2385..3255+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTTGCGCGGAGAACGGCGAGACAAGTGCTGATGGCCAAACTTCGGCGGC
TTTTCTTCTCAAGCGTTGGGACGAGGACGACAACGGCACCCTCAGTTACG
AGGAACTGCATAGGCTTGCGCGGAGAACGGCGAGACAAGTGCTGATGGCC
AAACTTCGGCGGCTTTTCTTCTCAAGCGTTGGGACGAGGACGACAACGGC
ACCCTCAGTTACGAGGAACTGCATAGGGGTCTGGAGGAAATCGGCCTCCT
TCTCTCCAGCAAACAACGGCGCGAGTTGATTCGCCTCGCGGACCCGGACA
GGAGCGGTGGCGTGGATATCAAGGAGCTGACTGAGCTGCTCTACGACGTT
AAGGTCGAGATAGCGGCGGGACGAAGCTTAGAAGGAGAAGAAGAAGAGAC
CGTGGCGGCGGCAGCGCCAGGACGCATGGGACTGACCACCAGTTTAAGCA
CGAAGGTCGGCTTCCGTAGGACAGGCACCGGATTGCGTCCCAACGGTTTG
TCTGACGACGCTGGCGTGAATGACAGGGTGGAGCGTTTGCTGCGGAAGAG
GGCGTCAGAGAAGTGGTCGTGAGGGTCTGGAGGAAATCGGCCTCCTTCTC
TCCAGCAAACAACGGCGCGAGTTGATTCGCCTCGCGGACCCGGACAGGAG
CGGTGGCGTGGATATCAAGGAGCTGACTGAGCTGCTCTACGACGTTAAGG
TCGAGATAGCGGCGGGACGAAGCTTAGAAGGAGAAGAAGAAGAGACCGTG
GCGGCGGCAGCGCCAGGACGCATGGGACTGACCACCAGTTTAAGCACGAA
GGTCGGCTTCCGTAGGACAGGCACCGGATTGCGTCCCAACGGTTTGTCTG
ACGACGCTGGCGTGAATGACAGGGTGGAGCGTTTGCTGCGGAAGAGGGCG
TCAGAGAAGTGGTCGTGA
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