mRNA_E-fasciculatus_F_contig13914.2872.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13914.2872.1
Unique NamemRNA_E-fasciculatus_F_contig13914.2872.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13914.2872.1 vs. uniprot
Match: D7FQ28_ECTSI (Similar to calcyphosine-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ28_ECTSI)

HSP 1 Score: 521 bits (1341), Expect = 4.150e-181
Identity = 276/304 (90.79%), Postives = 284/304 (93.42%), Query Frame = 1 
Query:    1 NANFDFARYACLVTDRQILGMANVSLVSWLALLVFRWVSYGLQVGLSRNDDTVSFRAWFVFGIVLCLLELSLLFACMLGVRRVCIKLGADPQDPVKTVDAVLERIWVAPMTHVQHAASMHGIGMPALNEGSMSDTPGNS---RADQVAVVHGSEGGGGLEAGGSAVGSTMANFAEEMPTRRTDIPEITMRDAFILPIGNAYKRAVEILMLLNSYYLAFYAVYFISRASKSSTEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKA 903
            NANFDFARYACLVTDRQILGMANVSL SWLALLVFRWVSYGLQVGLSR+  TVSFRAWFVFGIVLCLLELSLLFACMLGVRRVCIKLGADPQDPVKTVDAVLERIWVAPMTHVQHAASMHGIG  AL EG+ SDTPGNS    ADQ A+VHGSEGGGGLEAG SA+ STM +FAEEMP R  +IPEITMRDAF+LPIG AYK+AVEILMLLNSYYLAFYAVYFISRASKS TEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKA
Sbjct:  126 NANFDFARYACLVTDRQILGMANVSLASWLALLVFRWVSYGLQVGLSRDGGTVSFRAWFVFGIVLCLLELSLLFACMLGVRRVCIKLGADPQDPVKTVDAVLERIWVAPMTHVQHAASMHGIGRSALGEGATSDTPGNSCAVDADQAAMVHGSEGGGGLEAGRSAIRSTMPDFAEEMPMRGANIPEITMRDAFVLPIGKAYKQAVEILMLLNSYYLAFYAVYFISRASKSETEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKA 429
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13914.2872.1 vs. uniprot
Match: A0A6H5JCN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN8_9PHAE)

HSP 1 Score: 519 bits (1337), Expect = 1.090e-180
Identity = 276/307 (89.90%), Postives = 286/307 (93.16%), Query Frame = 1 
Query:    1 NANFDFARYACLVTDRQILGMANVSLVSWLALLVFRWVSYGLQVGLSRNDDTVSFRAWFVFGIVLCLLELSLLFACMLGVRRVCIKLGADPQDPVKTVDAVLERIWVAPMTHVQHAASMHGIGMPALNEGSMSDTPGNS---RADQVAVVHGSEGGGGLEAGGSAVGSTMANFAEEMPTRRTDIPEITMRDAFILPIGNAYKRAVEILMLLNSYYLAFYAVYFISRASKSSTEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKASSR 912
            NANFDFARYAC+VTDRQILGMANVSLVSWLALLVFRWVSYGLQVGLSR+  TVSFRAWFVFGIVLCLLELSLLFACMLGVRRVCIKLGADPQDPVKTVDAVLERIWVAPMTHVQHAASMHGI  PAL+EG+ +DTP NS    ADQ AVVHGSEG GGLEAGGSAV STM +FA EMP R  +IPEITMRDAF+LPIG AYK+A+EILMLLNSYYLAFYAVYFISRASKS TEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKAS R
Sbjct:  251 NANFDFARYACMVTDRQILGMANVSLVSWLALLVFRWVSYGLQVGLSRDGGTVSFRAWFVFGIVLCLLELSLLFACMLGVRRVCIKLGADPQDPVKTVDAVLERIWVAPMTHVQHAASMHGIVRPALDEGATADTPRNSCAVDADQAAVVHGSEGSGGLEAGGSAVRSTMPDFAVEMPVRGANIPEITMRDAFVLPIGKAYKQAIEILMLLNSYYLAFYAVYFISRASKSDTEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKASLR 557
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13914.2872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ28_ECTSI4.150e-18190.79Similar to calcyphosine-like protein n=1 Tax=Ectoc... [more]
A0A6H5JCN8_9PHAE1.090e-18089.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13914contigE-fasciculatus_F_contig13914:201..2231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size924
Cds size924
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13914.2872.1prot_E-fasciculatus_F_contig13914.2872.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13914 201..2231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927883.46961-CDS-E-fasciculatus_F_contig13914:200..3491622927883.46961-CDS-E-fasciculatus_F_contig13914:200..349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 201..349 +
1695995737.0126793-CDS-E-fasciculatus_F_contig13914:200..3491695995737.0126793-CDS-E-fasciculatus_F_contig13914:200..349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 201..349 +
1622927883.4804382-CDS-E-fasciculatus_F_contig13914:995..11751622927883.4804382-CDS-E-fasciculatus_F_contig13914:995..1175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 996..1175 +
1695995737.021093-CDS-E-fasciculatus_F_contig13914:995..11751695995737.021093-CDS-E-fasciculatus_F_contig13914:995..1175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 996..1175 +
1622927883.49094-CDS-E-fasciculatus_F_contig13914:1442..19291622927883.49094-CDS-E-fasciculatus_F_contig13914:1442..1929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 1443..1929 +
1695995737.029564-CDS-E-fasciculatus_F_contig13914:1442..19291695995737.029564-CDS-E-fasciculatus_F_contig13914:1442..1929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 1443..1929 +
1622927883.5067692-CDS-E-fasciculatus_F_contig13914:2123..22311622927883.5067692-CDS-E-fasciculatus_F_contig13914:2123..2231Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 2124..2231 +
1695995737.0380557-CDS-E-fasciculatus_F_contig13914:2123..22311695995737.0380557-CDS-E-fasciculatus_F_contig13914:2123..2231Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13914 2124..2231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13914.2872.1

>prot_E-fasciculatus_F_contig13914.2872.1 ID=prot_E-fasciculatus_F_contig13914.2872.1|Name=mRNA_E-fasciculatus_F_contig13914.2872.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=308bp
NANFDFARYACLVTDRQILGMANVSLVSWLALLVFRWVSYGLQVGLSRND
DTVSFRAWFVFGIVLCLLELSLLFACMLGVRRVCIKLGADPQDPVKTVDA
VLERIWVAPMTHVQHAASMHGIGMPALNEGSMSDTPGNSRADQVAVVHGS
EGGGGLEAGGSAVGSTMANFAEEMPTRRTDIPEITMRDAFILPIGNAYKR
AVEILMLLNSYYLAFYAVYFISRASKSSTEWVWIIVLPLPILAGVLMAYR
RVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFK
ASSRACT*
back to top

mRNA from alignment at E-fasciculatus_F_contig13914:201..2231+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13914.2872.1 ID=mRNA_E-fasciculatus_F_contig13914.2872.1|Name=mRNA_E-fasciculatus_F_contig13914.2872.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2031bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13914:201..2231+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACGCGAACTTTGACTTCGCGAGGTACGCGTGCTTGGTGACAGACCGACA
GATTCTGGGCATGGCTAATGTCTCCCTCGTCAGCTGGCTGGCACTTCTCG
TTTTCCGCTGGGTCTCGTACGGTCTGCAAGTGGGGTTGTCTCGCAACGAG
TAAGTCTTGGGAAGGGCTTAGGGGTTGTAGGTGGGGTATTTTCTGTTGTG
CTGCCGGCTGGGAGCCATGCTGAAGGGTCATGTTGTCTTCCAAACCGTGA
TCGAATCGCACCAGTGCCATGCCACTCCATGTCGCAACATCCCGGCAAAG
GCGTCTCTTATGGCACTCCTATTGGGGATACGATTTCGTAAACAACAGCC
GCTGCATTAGGGAACCTCACCCCAGAGTTGGCAGGGGGACCGCTCGTTCG
TGAGAATACCATTTAGTGTACAACAACCGTAGGTGGAGAGCTATCCTTGC
TCCTCACCCTGACAAAACTTGCAGAGGGGGCACTTGACCAGTGGGAGTTT
TCGCTGTTAAACATTTCAACTTGCTTTCTATTGCTGGGTACACGCCAGAA
GACCGCCAAAACGCACGTTGCCATCGGAGAAAGTTCGAACCCCTAAAACA
CGATTGGCCCGATAACCACACGCTATGGTCGGGCCACATGAAAATTTTGG
TACGCCATCGGACCGCGAAACAAACGCTTTCGCGTTGAAGACGTGATCAA
CATCGGAACTCAGCCAGTAGAACAACCCGGCAGACGTCCCAGTCGACCCA
ACCCAACGACCCCTCCCCCTGTCGCGCGCGCGCCCACACCGACAGTGACA
CGGTGAGCTTCCGGGCGTGGTTTGTCTTCGGGATAGTGCTTTGCCTGTTG
GAGCTGTCGCTCCTCTTCGCGTGCATGCTGGGGGTCAGGAGGGTGTGCAT
CAAACTGGGAGCCGATCCCCAGGACCCCGTGAAAACGGTGGACGCTGTCC
TCGAGAGGATCTGGGTCGCCCCGATGTGAGAAGAGTTGTGTAGCGAGCGC
TTTTCCATTGGTCATGTATGTTGAGGTATGTAGACAGTTTGGATCCCTTG
ATGCTTGTGCGAAAACACGATCGAGCGGTGAAGAAAGTCTCACCCCTGAA
CGGTATGTATGCGTCTAGCAAAAAAGTGGGAATTGCCCTCTCGCCTCACT
TGAGATGCATCGCGACCGACTCGTCAGTGCACCCCCTACCTCAATTCCTT
CATCTTCCTTCCCAACCCGATCTCGATACCGCGGACAACCAGGACACACG
TGCAGCACGCGGCATCGATGCACGGGATCGGGATGCCAGCACTTAACGAA
GGCTCAATGTCCGACACGCCTGGGAATTCTCGTGCCGATCAAGTGGCGGT
GGTCCATGGCAGCGAGGGTGGCGGGGGGTTGGAGGCGGGCGGGAGCGCGG
TCGGCTCGACGATGGCGAACTTTGCTGAGGAGATGCCAACGAGAAGGACG
GACATCCCGGAGATCACGATGAGAGATGCGTTCATCTTGCCGATCGGCAA
CGCGTACAAGCGGGCCGTCGAGATCCTGATGCTGCTGAACTCGTACTACC
TGGCGTTCTACGCCGTGTACTTCATCAGCCGTGCCTCCAAGAGCTCGACC
GAGTGGGTGTGGATCATCGTGTTGCCGCTGCCCATCCTGGCCGGCGTGCT
CATGGCGTACAGGAGGGTACTCCCGCTGATCGCGTTGCTGTCGACGATCG
TCATGATGCAGCCCACGGACGTGGCAGATGTGAGAGAACTGTCCCGGTTG
AGTGCAAGATGTGCTGTTGTTGTGTACTGGTGCTGTTGATGTTGCCGTGG
TTGTCTTTTGACAGTTTCGTATGGACAAAACGCGTCAGTACGTGCATCGC
TCCACGTACACGCCACCATCTATGTATGCCGCTTATACGCTGTGTCCCCG
CCGACTTCGTCATGCCTCCGCAGGTGGAACAAGAGGCCGAAGAACTGAAC
AAGCTTCGCCGCAAGCTGGTGATGCGGGTGGAGGACGTGCTTGAGCAAGA
GTTCAAGGCGAGTAGTCGCGCGTGTACATAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13914:201..2231+

>mRNA_E-fasciculatus_F_contig13914.2872.1 ID=mRNA_E-fasciculatus_F_contig13914.2872.1|Name=mRNA_E-fasciculatus_F_contig13914.2872.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13914:201..2231+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACGCGAACTTTGACTTCGCGAGGTACGCGTGCTTGGTGACAGACCGACA
GATTCTGGGCATGGCTAATGTCTCCCTCGTCAGCTGGCTGGCACTTCTCG
TTTTCCGCTGGGTCTCGTACGGTCTGCAAGTGGGGTTGTCTCGCAACGAA
ACGCGAACTTTGACTTCGCGAGGTACGCGTGCTTGGTGACAGACCGACAG
ATTCTGGGCATGGCTAATGTCTCCCTCGTCAGCTGGCTGGCACTTCTCGT
TTTCCGCTGGGTCTCGTACGGTCTGCAAGTGGGGTTGTCTCGCAACGATG
ACACGGTGAGCTTCCGGGCGTGGTTTGTCTTCGGGATAGTGCTTTGCCTG
TTGGAGCTGTCGCTCCTCTTCGCGTGCATGCTGGGGGTCAGGAGGGTGTG
CATCAAACTGGGAGCCGATCCCCAGGACCCCGTGAAAACGGTGGACGCTG
TCCTCGAGAGGATCTGGGTCGCCCCGATTGACACGGTGAGCTTCCGGGCG
TGGTTTGTCTTCGGGATAGTGCTTTGCCTGTTGGAGCTGTCGCTCCTCTT
CGCGTGCATGCTGGGGGTCAGGAGGGTGTGCATCAAACTGGGAGCCGATC
CCCAGGACCCCGTGAAAACGGTGGACGCTGTCCTCGAGAGGATCTGGGTC
GCCCCGATGACACACGTGCAGCACGCGGCATCGATGCACGGGATCGGGAT
GCCAGCACTTAACGAAGGCTCAATGTCCGACACGCCTGGGAATTCTCGTG
CCGATCAAGTGGCGGTGGTCCATGGCAGCGAGGGTGGCGGGGGGTTGGAG
GCGGGCGGGAGCGCGGTCGGCTCGACGATGGCGAACTTTGCTGAGGAGAT
GCCAACGAGAAGGACGGACATCCCGGAGATCACGATGAGAGATGCGTTCA
TCTTGCCGATCGGCAACGCGTACAAGCGGGCCGTCGAGATCCTGATGCTG
CTGAACTCGTACTACCTGGCGTTCTACGCCGTGTACTTCATCAGCCGTGC
CTCCAAGAGCTCGACCGAGTGGGTGTGGATCATCGTGTTGCCGCTGCCCA
TCCTGGCCGGCGTGCTCATGGCGTACAGGAGGGTACTCCCGCTGATCGCG
TTGCTGTCGACGATCGTCATGATGCAGCCCACGGACGTGGCAGATGACAC
ACGTGCAGCACGCGGCATCGATGCACGGGATCGGGATGCCAGCACTTAAC
GAAGGCTCAATGTCCGACACGCCTGGGAATTCTCGTGCCGATCAAGTGGC
GGTGGTCCATGGCAGCGAGGGTGGCGGGGGGTTGGAGGCGGGCGGGAGCG
CGGTCGGCTCGACGATGGCGAACTTTGCTGAGGAGATGCCAACGAGAAGG
ACGGACATCCCGGAGATCACGATGAGAGATGCGTTCATCTTGCCGATCGG
CAACGCGTACAAGCGGGCCGTCGAGATCCTGATGCTGCTGAACTCGTACT
ACCTGGCGTTCTACGCCGTGTACTTCATCAGCCGTGCCTCCAAGAGCTCG
ACCGAGTGGGTGTGGATCATCGTGTTGCCGCTGCCCATCCTGGCCGGCGT
GCTCATGGCGTACAGGAGGGTACTCCCGCTGATCGCGTTGCTGTCGACGA
TCGTCATGATGCAGCCCACGGACGTGGCAGATGTGGAACAAGAGGCCGAA
GAACTGAACAAGCTTCGCCGCAAGCTGGTGATGCGGGTGGAGGACGTGCT
TGAGCAAGAGTTCAAGGCGAGTAGTCGCGCGTGTACATAGGTGGAACAAG
AGGCCGAAGAACTGAACAAGCTTCGCCGCAAGCTGGTGATGCGGGTGGAG
GACGTGCTTGAGCAAGAGTTCAAGGCGAGTAGTCGCGCGTGTACATAG
back to top