mRNA_E-fasciculatus_F_contig1391.2870.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1391.2870.1
Unique Name	mRNA_E-fasciculatus_F_contig1391.2870.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1391.2870.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1391.2870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1391	contig	E-fasciculatus_F_contig1391:8001..10071 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	2071
Cds size	2070
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927883.1187027-CDS-E-fasciculatus_F_contig1391:8000..10070	1622927883.1187027-CDS-E-fasciculatus_F_contig1391:8000..10070	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig1391 8001..10070 +
1695995736.833057-CDS-E-fasciculatus_F_contig1391:8000..10070	1695995736.833057-CDS-E-fasciculatus_F_contig1391:8000..10070	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig1391 8001..10070 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1391.2870.1	prot_E-fasciculatus_F_contig1391.2870.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1391 8001..10070 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1391:8001..10071+
coding sequence from alignment at E-fasciculatus_F_contig1391:8001..10071+

protein sequence of mRNA_E-fasciculatus_F_contig1391.2870.1

>prot_E-fasciculatus_F_contig1391.2870.1 ID=prot_E-fasciculatus_F_contig1391.2870.1|Name=mRNA_E-fasciculatus_F_contig1391.2870.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=690bp
RSSSGGSGGNGGGTPGVQPVADLDRYNIDRPGGHVGLKASGLLDRFVDCP
QAIDALAGVFKSRRGQQESSEALFSTAVANLDALAVEHLEATTGDIKGGV
ALTSASTAWPADGAPVCVMFGLCNKGEHSISQLTKAAPENHTTAAMLALF
DVWRSGRTEGAAECSPFAFNFNPFLCMQTYQAAFGGSTLTSKPRCDVERL
GLGAALLRLLCLAALAECNVSVAGALSVTSKSLPGDVFALGELRARLGPA
ALEAFSGGLKLADTASGVVLSSCHPSVMQTTRSRHQTWVGVNVTEASSNV
LRLDPAGTPTRKLQDAVDMFCRQLQHHSGGKFTLSVLATPTALPVPDPGT
EAAVVQSVRTKIEERAGAPGLLAWPTKEQSDSAARAGRSTYESLAARAKA
YLPSGAIASGCAVGATGGCQVVAGTWPNNNTRDGGLLQGNTVWVVNTILA
ALARGEGAAGFDSAAAVINKTSDAGSLAMCLNRLCINDYAGDEITGSRSP
SADGTTIGKMTPELRADLGLGEGEDAPLLRAVSHGIGRGTVKAMVAAGGS
KVVWVFGRHGAGDGQHADWLGADSYTDVSDLVADYAALSLGGSYGIGSTG
GVSVGVASWDGVGSTVVVTNMSHASYPLAVVHSGDARGASGLSASLHFAG
ANTAVILTIASLLGTPLPRSLEESCASWLLLGDRGVVGGA

mRNA from alignment at E-fasciculatus_F_contig1391:8001..10071+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1391.2870.1 ID=mRNA_E-fasciculatus_F_contig1391.2870.1|Name=mRNA_E-fasciculatus_F_contig1391.2870.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2071bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1391:8001..10071+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGAGCAGCAGCGGTGGCAGCGGAGGCAACGGCGGTGGTACACCCGGCGT
GCAACCGGTGGCGGACCTCGACCGCTACAACATCGACCGCCCCGGCGGTC
ACGTCGGGTTGAAGGCGTCGGGGCTCCTCGACCGTTTCGTGGATTGTCCC
CAGGCGATCGATGCTCTCGCGGGCGTTTTCAAGTCTCGGCGCGGACAGCA
AGAGTCGAGCGAGGCGCTCTTTTCGACGGCGGTGGCCAACTTGGATGCGC
TGGCGGTTGAGCATCTCGAGGCAACGACCGGCGACATCAAGGGCGGCGTT
GCCCTTACTTCCGCCTCAACGGCGTGGCCGGCTGACGGCGCCCCAGTCTG
CGTCATGTTCGGCCTGTGTAACAAGGGCGAACACAGCATCAGCCAGCTGA
CGAAAGCGGCACCGGAGAACCACACGACGGCTGCCATGTTGGCGCTCTTC
GACGTGTGGCGGTCCGGGCGGACCGAAGGCGCTGCGGAGTGTTCTCCCTT
CGCATTCAACTTCAACCCGTTCTTGTGCATGCAGACCTACCAGGCGGCCT
TCGGCGGCAGCACCCTCACCAGCAAGCCGCGCTGTGACGTCGAAAGGCTC
GGGCTTGGTGCTGCACTACTGCGACTCCTCTGCTTGGCTGCTTTGGCGGA
GTGCAACGTTTCTGTGGCCGGCGCCTTGAGCGTGACGTCGAAGTCACTCC
CTGGTGACGTGTTTGCGTTGGGAGAGCTTCGGGCGAGGCTGGGACCAGCG
GCCCTGGAAGCATTCAGCGGTGGTTTAAAGCTTGCGGACACCGCCTCCGG
GGTCGTCTTGTCTTCTTGTCACCCTTCCGTCATGCAGACGACACGCAGCC
GGCACCAGACCTGGGTGGGCGTGAATGTGACGGAGGCGTCCTCAAACGTC
CTGAGGCTGGATCCTGCCGGCACCCCGACCCGGAAACTCCAGGACGCCGT
TGACATGTTCTGCCGACAACTGCAACACCATTCGGGTGGGAAATTTACTC
TCAGCGTGCTAGCCACCCCGACGGCTCTGCCAGTCCCGGACCCGGGTACC
GAAGCAGCAGTGGTCCAGTCTGTGCGGACGAAAATCGAGGAGAGGGCCGG
TGCGCCGGGGCTGCTTGCGTGGCCCACGAAGGAGCAGTCCGACTCGGCGG
CGCGGGCCGGCAGGTCGACGTACGAGTCCCTCGCGGCGAGAGCAAAGGCG
TATCTGCCCTCGGGTGCCATCGCCAGCGGTTGCGCCGTCGGGGCAACCGG
TGGATGCCAGGTTGTGGCCGGAACGTGGCCTAACAACAATACTCGGGACG
GTGGTCTGCTTCAGGGCAACACGGTGTGGGTGGTTAACACCATCTTGGCG
GCGCTGGCGCGTGGAGAGGGCGCCGCTGGTTTCGACTCGGCGGCGGCCGT
GATCAACAAGACCTCTGATGCGGGATCCTTGGCGATGTGCCTCAACCGCC
TGTGCATCAACGACTACGCTGGAGACGAGATCACGGGCAGCAGATCGCCA
TCAGCGGATGGAACGACGATTGGCAAGATGACCCCCGAGCTGCGCGCCGA
CCTGGGCCTCGGGGAGGGGGAGGATGCGCCGCTGCTGCGTGCGGTTTCCC
ACGGTATTGGTCGGGGGACCGTCAAGGCGATGGTGGCAGCCGGAGGGAGT
AAGGTGGTTTGGGTCTTTGGACGGCATGGCGCTGGGGACGGACAACACGC
CGACTGGCTCGGGGCGGACTCCTACACGGACGTGAGCGACCTGGTCGCCG
ACTACGCCGCGCTTTCCCTAGGCGGCAGCTATGGAATCGGCTCGACCGGC
GGCGTCTCTGTGGGAGTCGCATCCTGGGACGGAGTCGGCAGCACCGTCGT
CGTGACCAATATGTCGCATGCAAGCTACCCTCTTGCGGTGGTCCATAGCG
GCGATGCGCGTGGAGCATCGGGCCTCAGCGCGTCCCTTCACTTCGCGGGC
GCCAACACCGCGGTCATTCTTACGATTGCGTCCCTCCTCGGAACGCCCCT
CCCGCGCTCGCTCGAGGAATCCTGTGCTAGTTGGCTCCTCCTTGGAGATC
GCGGGGTGGTGGGTGGAGCAC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1391:8001..10071+

>mRNA_E-fasciculatus_F_contig1391.2870.1 ID=mRNA_E-fasciculatus_F_contig1391.2870.1|Name=mRNA_E-fasciculatus_F_contig1391.2870.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4140bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1391:8001..10071+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGAGCAGCAGCGGTGGCAGCGGAGGCAACGGCGGTGGTACACCCGGCGT
GCAACCGGTGGCGGACCTCGACCGCTACAACATCGACCGCCCCGGCGGTC
ACGTCGGGTTGAAGGCGTCGGGGCTCCTCGACCGTTTCGTGGATTGTCCC
CAGGCGATCGATGCTCTCGCGGGCGTTTTCAAGTCTCGGCGCGGACAGCA
AGAGTCGAGCGAGGCGCTCTTTTCGACGGCGGTGGCCAACTTGGATGCGC
TGGCGGTTGAGCATCTCGAGGCAACGACCGGCGACATCAAGGGCGGCGTT
GCCCTTACTTCCGCCTCAACGGCGTGGCCGGCTGACGGCGCCCCAGTCTG
CGTCATGTTCGGCCTGTGTAACAAGGGCGAACACAGCATCAGCCAGCTGA
CGAAAGCGGCACCGGAGAACCACACGACGGCTGCCATGTTGGCGCTCTTC
GACGTGTGGCGGTCCGGGCGGACCGAAGGCGCTGCGGAGTGTTCTCCCTT
CGCATTCAACTTCAACCCGTTCTTGTGCATGCAGACCTACCAGGCGGCCT
TCGGCGGCAGCACCCTCACCAGCAAGCCGCGCTGTGACGTCGAAAGGCTC
GGGCTTGGTGCTGCACTACTGCGACTCCTCTGCTTGGCTGCTTTGGCGGA
GTGCAACGTTTCTGTGGCCGGCGCCTTGAGCGTGACGTCGAAGTCACTCC
CTGGTGACGTGTTTGCGTTGGGAGAGCTTCGGGCGAGGCTGGGACCAGCG
GCCCTGGAAGCATTCAGCGGTGGTTTAAAGCTTGCGGACACCGCCTCCGG
GGTCGTCTTGTCTTCTTGTCACCCTTCCGTCATGCAGACGACACGCAGCC
GGCACCAGACCTGGGTGGGCGTGAATGTGACGGAGGCGTCCTCAAACGTC
CTGAGGCTGGATCCTGCCGGCACCCCGACCCGGAAACTCCAGGACGCCGT
TGACATGTTCTGCCGACAACTGCAACACCATTCGGGTGGGAAATTTACTC
TCAGCGTGCTAGCCACCCCGACGGCTCTGCCAGTCCCGGACCCGGGTACC
GAAGCAGCAGTGGTCCAGTCTGTGCGGACGAAAATCGAGGAGAGGGCCGG
TGCGCCGGGGCTGCTTGCGTGGCCCACGAAGGAGCAGTCCGACTCGGCGG
CGCGGGCCGGCAGGTCGACGTACGAGTCCCTCGCGGCGAGAGCAAAGGCG
TATCTGCCCTCGGGTGCCATCGCCAGCGGTTGCGCCGTCGGGGCAACCGG
TGGATGCCAGGTTGTGGCCGGAACGTGGCCTAACAACAATACTCGGGACG
GTGGTCTGCTTCAGGGCAACACGGTGTGGGTGGTTAACACCATCTTGGCG
GCGCTGGCGCGTGGAGAGGGCGCCGCTGGTTTCGACTCGGCGGCGGCCGT
GATCAACAAGACCTCTGATGCGGGATCCTTGGCGATGTGCCTCAACCGCC
TGTGCATCAACGACTACGCTGGAGACGAGATCACGGGCAGCAGATCGCCA
TCAGCGGATGGAACGACGATTGGCAAGATGACCCCCGAGCTGCGCGCCGA
CCTGGGCCTCGGGGAGGGGGAGGATGCGCCGCTGCTGCGTGCGGTTTCCC
ACGGTATTGGTCGGGGGACCGTCAAGGCGATGGTGGCAGCCGGAGGGAGT
AAGGTGGTTTGGGTCTTTGGACGGCATGGCGCTGGGGACGGACAACACGC
CGACTGGCTCGGGGCGGACTCCTACACGGACGTGAGCGACCTGGTCGCCG
ACTACGCCGCGCTTTCCCTAGGCGGCAGCTATGGAATCGGCTCGACCGGC
GGCGTCTCTGTGGGAGTCGCATCCTGGGACGGAGTCGGCAGCACCGTCGT
CGTGACCAATATGTCGCATGCAAGCTACCCTCTTGCGGTGGTCCATAGCG
GCGATGCGCGTGGAGCATCGGGCCTCAGCGCGTCCCTTCACTTCGCGGGC
GCCAACACCGCGGTCATTCTTACGATTGCGTCCCTCCTCGGAACGCCCCT
CCCGCGCTCGCTCGAGGAATCCTGTGCTAGTTGGCTCCTCCTTGGAGATC
GCGGGGTGGTGGGTGGAGCAAGGAGCAGCAGCGGTGGCAGCGGAGGCAAC
GGCGGTGGTACACCCGGCGTGCAACCGGTGGCGGACCTCGACCGCTACAA
CATCGACCGCCCCGGCGGTCACGTCGGGTTGAAGGCGTCGGGGCTCCTCG
ACCGTTTCGTGGATTGTCCCCAGGCGATCGATGCTCTCGCGGGCGTTTTC
AAGTCTCGGCGCGGACAGCAAGAGTCGAGCGAGGCGCTCTTTTCGACGGC
GGTGGCCAACTTGGATGCGCTGGCGGTTGAGCATCTCGAGGCAACGACCG
GCGACATCAAGGGCGGCGTTGCCCTTACTTCCGCCTCAACGGCGTGGCCG
GCTGACGGCGCCCCAGTCTGCGTCATGTTCGGCCTGTGTAACAAGGGCGA
ACACAGCATCAGCCAGCTGACGAAAGCGGCACCGGAGAACCACACGACGG
CTGCCATGTTGGCGCTCTTCGACGTGTGGCGGTCCGGGCGGACCGAAGGC
GCTGCGGAGTGTTCTCCCTTCGCATTCAACTTCAACCCGTTCTTGTGCAT
GCAGACCTACCAGGCGGCCTTCGGCGGCAGCACCCTCACCAGCAAGCCGC
GCTGTGACGTCGAAAGGCTCGGGCTTGGTGCTGCACTACTGCGACTCCTC
TGCTTGGCTGCTTTGGCGGAGTGCAACGTTTCTGTGGCCGGCGCCTTGAG
CGTGACGTCGAAGTCACTCCCTGGTGACGTGTTTGCGTTGGGAGAGCTTC
GGGCGAGGCTGGGACCAGCGGCCCTGGAAGCATTCAGCGGTGGTTTAAAG
CTTGCGGACACCGCCTCCGGGGTCGTCTTGTCTTCTTGTCACCCTTCCGT
CATGCAGACGACACGCAGCCGGCACCAGACCTGGGTGGGCGTGAATGTGA
CGGAGGCGTCCTCAAACGTCCTGAGGCTGGATCCTGCCGGCACCCCGACC
CGGAAACTCCAGGACGCCGTTGACATGTTCTGCCGACAACTGCAACACCA
TTCGGGTGGGAAATTTACTCTCAGCGTGCTAGCCACCCCGACGGCTCTGC
CAGTCCCGGACCCGGGTACCGAAGCAGCAGTGGTCCAGTCTGTGCGGACG
AAAATCGAGGAGAGGGCCGGTGCGCCGGGGCTGCTTGCGTGGCCCACGAA
GGAGCAGTCCGACTCGGCGGCGCGGGCCGGCAGGTCGACGTACGAGTCCC
TCGCGGCGAGAGCAAAGGCGTATCTGCCCTCGGGTGCCATCGCCAGCGGT
TGCGCCGTCGGGGCAACCGGTGGATGCCAGGTTGTGGCCGGAACGTGGCC
TAACAACAATACTCGGGACGGTGGTCTGCTTCAGGGCAACACGGTGTGGG
TGGTTAACACCATCTTGGCGGCGCTGGCGCGTGGAGAGGGCGCCGCTGGT
TTCGACTCGGCGGCGGCCGTGATCAACAAGACCTCTGATGCGGGATCCTT
GGCGATGTGCCTCAACCGCCTGTGCATCAACGACTACGCTGGAGACGAGA
TCACGGGCAGCAGATCGCCATCAGCGGATGGAACGACGATTGGCAAGATG
ACCCCCGAGCTGCGCGCCGACCTGGGCCTCGGGGAGGGGGAGGATGCGCC
GCTGCTGCGTGCGGTTTCCCACGGTATTGGTCGGGGGACCGTCAAGGCGA
TGGTGGCAGCCGGAGGGAGTAAGGTGGTTTGGGTCTTTGGACGGCATGGC
GCTGGGGACGGACAACACGCCGACTGGCTCGGGGCGGACTCCTACACGGA
CGTGAGCGACCTGGTCGCCGACTACGCCGCGCTTTCCCTAGGCGGCAGCT
ATGGAATCGGCTCGACCGGCGGCGTCTCTGTGGGAGTCGCATCCTGGGAC
GGAGTCGGCAGCACCGTCGTCGTGACCAATATGTCGCATGCAAGCTACCC
TCTTGCGGTGGTCCATAGCGGCGATGCGCGTGGAGCATCGGGCCTCAGCG
CGTCCCTTCACTTCGCGGGCGCCAACACCGCGGTCATTCTTACGATTGCG
TCCCTCCTCGGAACGCCCCTCCCGCGCTCGCTCGAGGAATCCTGTGCTAG
TTGGCTCCTCCTTGGAGATCGCGGGGTGGTGGGTGGAGCA