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Homology
BLAST of mRNA_E-fasciculatus_F_contig13907.2868.1 vs. uniprot
Match: D8LB08_ECTSI (Miro-related GTP-ase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB08_ECTSI) HSP 1 Score: 423 bits (1087), Expect = 5.560e-140 Identity = 228/257 (88.72%), Postives = 239/257 (93.00%), Query Frame = 1
Query: 1 QILGRLASEGGEAAEKFVQVQRGDSPGGFTEEGFLRLIQLFIDKKQMKAPWQAMSSHHYDEELVLVLPSEMTDPPPGKANAQDQVLSPLARKFLLQLFQQFSEEREGGDGPDASPLRLLAEEGQAKVFSVIPDPTCAPWDPPRSREXXXXXXXXXXXXXXXXXXXXVFAMPPFARLGRAPGAGRALTAEGWIAHWQMLALHSPVLLRSHLFYVGFGGHAEDMLVNKDSQVSYRTAAATETSPRRSGARGRQPSVMEV 771
+ILGRLASEGGE EKFVQ +RG +P GFTE GFLRLIQLFIDKKQMKAPWQAMSSHHYDEELVLV+PSEMTDPPPGKANAQDQVLSP A KFLL+LF+QFSEEREGGDG DASP RLLAEEGQAKVFSVIPDPTCAPWDPPRS XXXXXXXXXXXXXXXXX VF+MPPFARLGRAPGAGRALTAEGWIAHWQMLALHSPVLLRSHLFYVGFGGHAE+MLV+K SQ++YR AA TETSPRRSGARGRQPSVMEV
Sbjct: 238 KILGRLASEGGEDVEKFVQEERGGNPKGFTEAGFLRLIQLFIDKKQMKAPWQAMSSHHYDEELVLVVPSEMTDPPPGKANAQDQVLSPQAHKFLLELFKQFSEEREGGDGLDASPPRLLAEEGQAKVFSVIPDPTCAPWDPPRSLGEEXXXXXXXXXXXXXXXXXAVFSMPPFARLGRAPGAGRALTAEGWIAHWQMLALHSPVLLRSHLFYVGFGGHAEEMLVDKSSQLTYRAAATTETSPRRSGARGRQPSVMEV 494
BLAST of mRNA_E-fasciculatus_F_contig13907.2868.1 vs. uniprot
Match: A0A6H5JAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM1_9PHAE) HSP 1 Score: 410 bits (1053), Expect = 5.850e-137 Identity = 223/257 (86.77%), Postives = 234/257 (91.05%), Query Frame = 1
Query: 1 QILGRLASEGGEAAEKFVQVQRGDSPGGFTEEGFLRLIQLFIDKKQMKAPWQAMSSHHYDEELVLVLPSEMTDPPPGKANAQDQVLSPLARKFLLQLFQQFSEEREGGDGPDASPLRLLAEEGQAKVFSVIPDPTCAPWDPPRSREXXXXXXXXXXXXXXXXXXXXVFAMPPFARLGRAPGAGRALTAEGWIAHWQMLALHSPVLLRSHLFYVGFGGHAEDMLVNKDSQVSYRTAAATETSPRRSGARGRQPSVMEV 771
+ILGRLASEGGE EKFV+ RG PG FTEEGFLRLIQLFIDKKQMKAPWQAMSSHHYDEELVLV+PSEMTDPPPGKANAQDQVLSP A KFLL+LF+QFSEEREGG DASP RLL EEGQA+VFSVIPDPTCAPWDPPRSR XXXXXXXXXXXXXXXX VF+MPPFARLGRAPGAGRALTAEGWIAHWQMLALHSPVLLRSHLFYVGF GHAE+MLV+K SQ++YR AA TETSPRRSGARGRQPSVMEV
Sbjct: 238 KILGRLASEGGEDVEKFVKEDRGGDPGRFTEEGFLRLIQLFIDKKQMKAPWQAMSSHHYDEELVLVVPSEMTDPPPGKANAQDQVLSPKAHKFLLELFKQFSEEREGGGVLDASPTRLLTEEGQAEVFSVIPDPTCAPWDPPRSR-GEEXXXXXXXXXXXXXXXXGVFSMPPFARLGRAPGAGRALTAEGWIAHWQMLALHSPVLLRSHLFYVGFKGHAEEMLVDKSSQLAYRAAATTETSPRRSGARGRQPSVMEV 493
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 422.5 |
| Seed ortholog evalue | 1.4e-115 |
| Seed eggNOG ortholog | 2880.D8LB08 |
| Preferred name | RHOT2 |
| KEGG ko | ko:K06883,ko:K07870,ko:K07871 |
| KEGG Pathway | ko04137,ko04214,map04137,map04214 |
| GOs | GO:0000001,GO:0000003,GO:0000166,GO:0000226,GO:0000287,GO:0000902,GO:0000904,GO:0001101,GO:0001505,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005509,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006928,GO:0006996,GO:0007005,GO:0007006,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0008088,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009966,GO:0009987,GO:0010033,GO:0010154,GO:0010570,GO:0010646,GO:0010821,GO:0010970,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016192,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019725,GO:0019867,GO:0019896,GO:0022406,GO:0022414,GO:0023051,GO:0023052,GO:0030154,GO:0030705,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032592,GO:0032865,GO:0032879,GO:0032886,GO:0032989,GO:0032991,GO:0033043,GO:0033993,GO:0034640,GO:0034643,GO:0035639,GO:0035794,GO:0036094,GO:0036211,GO:0040007,GO:0040008,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044706,GO:0046872,GO:0046902,GO:0046907,GO:0046928,GO:0047497,GO:0048308,GO:0048311,GO:0048316,GO:0048468,GO:0048489,GO:0048583,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050804,GO:0050896,GO:0051046,GO:0051049,GO:0051056,GO:0051128,GO:0051179,GO:0051234,GO:0051270,GO:0051588,GO:0051640,GO:0051641,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0055081,GO:0055088,GO:0055091,GO:0060237,GO:0060341,GO:0060560,GO:0060632,GO:0061024,GO:0061458,GO:0065007,GO:0065008,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072384,GO:0090559,GO:0097159,GO:0097190,GO:0097305,GO:0097345,GO:0097367,GO:0097479,GO:0097480,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:0098930,GO:0099003,GO:0099098,GO:0099111,GO:0099177,GO:0140056,GO:1900428,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1902108,GO:1902110,GO:1902513,GO:1902531,GO:1902686,GO:1903338,GO:1903530,GO:1905710,GO:1990456 |
| EggNOG free text desc. | GTPase activity |
| EggNOG OGs | COG1100@1,KOG1707@2759 |
| COG Functional cat. | F |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03029,ko04031 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Miro-related GTP-ase 1 |
| Ec32 ortholog | Ec-27_005710.1 |
| Exons | 5 |
| Model size | 771 |
| Cds size | 771 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13907.2868.1 >prot_E-fasciculatus_F_contig13907.2868.1 ID=prot_E-fasciculatus_F_contig13907.2868.1|Name=mRNA_E-fasciculatus_F_contig13907.2868.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=257bp
QILGRLASEGGEAAEKFVQVQRGDSPGGFTEEGFLRLIQLFIDKKQMKAP WQAMSSHHYDEELVLVLPSEMTDPPPGKANAQDQVLSPLARKFLLQLFQQ FSEEREGGDGPDASPLRLLAEEGQAKVFSVIPDPTCAPWDPPRSREEEES SEEEGQGQEAAGGGGGVFAMPPFARLGRAPGAGRALTAEGWIAHWQMLAL HSPVLLRSHLFYVGFGGHAEDMLVNKDSQVSYRTAAATETSPRRSGARGR QPSVMEV back to topmRNA from alignment at E-fasciculatus_F_contig13907:562..3197- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13907.2868.1 ID=mRNA_E-fasciculatus_F_contig13907.2868.1|Name=mRNA_E-fasciculatus_F_contig13907.2868.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13907:562..3197- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CAGATTCTGGGAAGACTGGCATCCGAGGGGGGCGAGGCCGCCGAGAAATT
CGTCCAGGTGCAGAGAGGAGACAGCCCCGGGGGCTTCACCGAGGAGGGGT
TCTTGAGACTGATTCAGCTGTTCATCGATAAGAAGCAGGTACATGTTGTA
GCACCGGTGGAAACGGAGAGGGGGGGGTTGACCTTTTTTTTTTGCTGTAG
AGAGGGGAGGAAAAGGGGAGAGCTTGTCAACTGGTTCATGTGCTGCTGAT
GGACGAGAACGCGGTATAGGTATTTTGTAGAAGTTGGCGGAGCCAAAGGG
AAGGAATGTTCATGTTTTTCACGTGCGGAAAGGCGTCGCCCGTCTTTTTG
TCGCCGAAAACGATTCGCTCATTCCTGTCTTTTTGGTCGTCGTGTCTTTT
TCGGTCGCAGATGAAAGCCCCCTGGCAAGCGATGAGCAGCCACCACTACG
ACGAGGAGCTTGTGCTGGTGCTGCCTTCGGAGATGACCGACCCTCCCCCG
GGGAAAGCGAACGCGCAGGACCAGGTAGGCGGGGGCATCATGAGGCTGGT
GCTGAGATGTGTAGTTGCCGTAAAGCGGGAGAGAGGAAGATGGGCTTGCT
GGTGAGGGTCGGAACAATGTCTGACCATGGCTATAGCAGTGTGGTATTGT
ATGGTGCGGCACGGTACTGGTTGTGCTGTAGTATGGTGTTGTTTGAGGTG
CCACACCAAAGCGAGAGTGAGAGAGAGAGAGAGGCGTGGGTACGGGTGCA
AGATGGTTGCACCGAGGATCTGTGCTTTGCTGCTGCTGCTGCGACTGCCG
CTGCGGCCGCTTTTCTATGCTACCCTGTGGCGTATCGTTTGTGCGACGCT
GTGTTGGCAGACGTCATCATGATTGCTTTGTGGCACTAACACACGGCTGC
TGCGGTGGCACGGCGCCTGCTACGGATGGACTTCGCGTTACACGCTTGCA
GGTGTTGTCGCCCCTGGCTCGTAAGTTCTTGCTGCAGTTGTTCCAACAGT
TTTCGGAGGAGCGGGAGGGAGGGGACGGTCCCGACGCATCCCCTCTCAGG
CTGTTAGCGGAGGAGGGTCAGGCGAAGGTGAGGCTCTTGTTGAAGCTCAT
TGTTTGTAGGCGGGAAAAGGTGAAGTCGATAACTTGTAAGGCCTTTCGAT
ATCACTGCCGAAGCCGATATCGTCGATTCCGAAGGTTGAACCCCACGACA
CCGAAGCATGTTAAACCTGTAGAAATACCGTATGGTATATTTTTGACATG
GGAATGTATATTTAGGGAGTTAGTTGCAGGTCTGCTGTTCTGTATGCATG
TGTCACCGATCGTCCAGATTAACATCAAGCCATATCCCCACGTAAAATCG
AAAGTCGTCAGCGCGTCTTAGCGCGGAAGCGTTTCCGCCACGCAGCGCCT
CCACCAAACGCCTCCGATATATGTGCGAATCCCCACCGCAGGTTTTTAGC
GTTATCCCCGACCCGACCTGCGCTCCTTGGGACCCCCCCCGATCAAGGGA
GGAGGAGGAGTCTTCGGAAGAGGAGGGTCAAGGCCAGGAAGCAGCAGGAG
GAGGAGGAGGTGTCTTTGCCATGCCACCGTTCGCTAGGCTGGGGCGGGCG
CCCGGGGCTGGCCGAGCGTTGACAGCGGAGGGCTGGATAGCCCATTGGCA
AATGGTGCGTGTTGTTGTTGTTGTTGTCGTCGTCTTCACGTGGAAATCCG
TTGCGATCTCTCCATCCAGTACCTTCATCTGTCCGTGCTAGTCCAACACT
TGACCGAAAGATTCCCGTGGTCACAGGCTAACTTGCCCTAAAGAGGTATA
CTAAATATAATGGACCAGAAGGGTGTGTTTAGTGGTAGCATCGACCGCGC
TAGCCGGCTGACCCATGAAAAGACGCCGAGTCTCAATGTGGCTGAAAACA
CTTGTGGAGGTATCATGATCTAGAACCCCGTGAGGGGCATGCCAAGCTAC
TCTCCGGATTAAAGATAGGAACGGTAGCAGCAAAAGAAACCTGCACGTTT
GTGTGCGGGTGTGTGCGCTAACTTGCCGGCCAATGAAGACGCCAGTCAGT
CTCTCTGCGGCTAAGAGCGGGAACTGGTTTTGAAGGTCGTGAGGGGGGAT
CATGCGTGCGTGAGCCTAGGCTTTCTTCCGGATTGAAGACAGAAACGGTA
GCAGATGAAGAGGAATTTACGTGTCAACCGAGGGTCGAGTGTGTGTTTGT
AAGGTCGGATCACGGCAGCTGGCCGGGAGACGAAAATCGTGACTGGTTCT
TGGATGAGGAAAATCGCGCGCAAGTCTTCGGCAGCTCGCGTCGTTGTTTG
TATGTGTGTGTAACGTGTGGTATGTGTTCGTTTGGTAGGGTTGACCACGC
TAACTGGCAGACTGAAAATATGTCAAGCCTCAGCTGGACACAGCAGAATG
GCAACAGTTGGAAACACTTTCAACCCCCACCGCCCTCTCTACGCTCAAAC
TGACAGCTGGCACTGCATAGCCCGGTCTTGCTACGATCACATCTCTTCTA
CGTCGGCTTCGGGGGGCACGCGGAGGATATGCTCGTGAACAAGGACTCCC
AGGTTTCCTACAGAACGGCAGCGGCGACAGAAACATCTCCGAGGCGATCG
GGGGCACGCGGACGGCAGCCCTCGGTGATGGAGGTG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13907:562..3197- >mRNA_E-fasciculatus_F_contig13907.2868.1 ID=mRNA_E-fasciculatus_F_contig13907.2868.1|Name=mRNA_E-fasciculatus_F_contig13907.2868.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13907:562..3197- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CAGATTCTGGGAAGACTGGCATCCGAGGGGGGCGAGGCCGCCGAGAAATT CGTCCAGGTGCAGAGAGGAGACAGCCCCGGGGGCTTCACCGAGGAGGGGT TCTTGAGACTGATTCAGCTGTTCATCGATAAGAAGCAGCAGATTCTGGGA AGACTGGCATCCGAGGGGGGCGAGGCCGCCGAGAAATTCGTCCAGGTGCA GAGAGGAGACAGCCCCGGGGGCTTCACCGAGGAGGGGTTCTTGAGACTGA TTCAGCTGTTCATCGATAAGAAGCAGATGAAAGCCCCCTGGCAAGCGATG AGCAGCCACCACTACGACGAGGAGCTTGTGCTGGTGCTGCCTTCGGAGAT GACCGACCCTCCCCCGGGGAAAGCGAACGCGCAGGACCAGATGAAAGCCC CCTGGCAAGCGATGAGCAGCCACCACTACGACGAGGAGCTTGTGCTGGTG CTGCCTTCGGAGATGACCGACCCTCCCCCGGGGAAAGCGAACGCGCAGGA CCAGGTGTTGTCGCCCCTGGCTCGTAAGTTCTTGCTGCAGTTGTTCCAAC AGTTTTCGGAGGAGCGGGAGGGAGGGGACGGTCCCGACGCATCCCCTCTC AGGCTGTTAGCGGAGGAGGGTCAGGCGAAGGTGTTGTCGCCCCTGGCTCG TAAGTTCTTGCTGCAGTTGTTCCAACAGTTTTCGGAGGAGCGGGAGGGAG GGGACGGTCCCGACGCATCCCCTCTCAGGCTGTTAGCGGAGGAGGGTCAG GCGAAGGTTTTTAGCGTTATCCCCGACCCGACCTGCGCTCCTTGGGACCC CCCCCGATCAAGGGAGGAGGAGGAGTCTTCGGAAGAGGAGGGTCAAGGCC AGGAAGCAGCAGGAGGAGGAGGAGGTGTCTTTGCCATGCCACCGTTCGCT AGGCTGGGGCGGGCGCCCGGGGCTGGCCGAGCGTTGACAGCGGAGGGCTG GATAGCCCATTGGCAAATGGTTTTTAGCGTTATCCCCGACCCGACCTGCG CTCCTTGGGACCCCCCCCGATCAAGGGAGGAGGAGGAGTCTTCGGAAGAG GAGGGTCAAGGCCAGGAAGCAGCAGGAGGAGGAGGAGGTGTCTTTGCCAT GCCACCGTTCGCTAGGCTGGGGCGGGCGCCCGGGGCTGGCCGAGCGTTGA CAGCGGAGGGCTGGATAGCCCATTGGCAAATGCTGGCACTGCATAGCCCG GTCTTGCTACGATCACATCTCTTCTACGTCGGCTTCGGGGGGCACGCGGA GGATATGCTCGTGAACAAGGACTCCCAGGTTTCCTACAGAACGGCAGCGG CGACAGAAACATCTCCGAGGCGATCGGGGGCACGCGGACGGCAGCCCTCG GTGATGGAGGTGCTGGCACTGCATAGCCCGGTCTTGCTACGATCACATCT CTTCTACGTCGGCTTCGGGGGGCACGCGGAGGATATGCTCGTGAACAAGG ACTCCCAGGTTTCCTACAGAACGGCAGCGGCGACAGAAACATCTCCGAGG CGATCGGGGGCACGCGGACGGCAGCCCTCGGTGATGGAGGTG back to top
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