mRNA_E-fasciculatus_F_contig13902.2866.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13902.2866.1
Unique NamemRNA_E-fasciculatus_F_contig13902.2866.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13902.2866.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 1.390e-114
Identity = 186/212 (87.74%), Postives = 192/212 (90.57%), Query Frame = 1 
Query:    1 MGWARKFCGADDGRFPPDESEEGIALGKVLAEHVVHDGDVGLVGTSPPTLLVHGLCIRVRHGESNRVLRVKRHPPASGDDEDNAERHQDEWAAVARQGVQGCRLRTGTKKEVASALAATFAGLSKEPNLASSAATPRTLGTLDMTADKGWRELFVPPELLASNAVTEAGPLQLTLLVTFVEVSAQFLPGDCFVSSEFTTVDHQGERATFEWV 636
            MGWARKF G DDGRFP DES EGIALGKVLA+HVV DGDVGL+GTSPPTLLVHGLCIRVRHGESNRVLRVKR PPASG  EDNA+RHQDEWAAVARQGVQGCRLR GTK+EVASALAATFAGL+ EPNL S AATPRTLGTLDMT DKGWRELFVP EL AS AV+EAGPLQLTLLVTFVEVSAQFLP DCFVSSEFTTVDHQG   TFEWV
Sbjct: 1160 MGWARKFFGVDDGRFPSDESGEGIALGKVLAKHVVRDGDVGLIGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPASGHGEDNAKRHQDEWAAVARQGVQGCRLRIGTKREVASALAATFAGLTTEPNLVSIAATPRTLGTLDMTTDKGWRELFVPLELSASTAVSEAGPLQLTLLVTFVEVSAQFLPSDCFVSSEFTTVDHQG-TVTFEWV 1370
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BLAST of mRNA_E-fasciculatus_F_contig13902.2866.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 1.240e-94
Identity = 158/181 (87.29%), Postives = 166/181 (91.71%), Query Frame = 1 
Query:    1 MGWARKFCGADDGRFPPDESEEGIALGKVLAEHVVHDGDVGLVGTSPPTLLVHGLCIRVRHGESNRVLRVKRHPPASGDDEDNAERHQDEWAAVARQGVQGCRLRTGTKKEVASALAATFAGLSKEPNLAS----SAATPRTLGTLDMTADKGWRELFVPPELLASNAVTEAGPLQLTLLV 531
            MGWARKFC +DDGRFP DES EGI+LGKVLA+HVV DGDVGLVGTSPPTLLVHGLCIRVRH ESNRVLRVKRHPPASG  EDNAERH+DEWA+VARQGV+GCRLR GTKKEVASALAATFAGL+K+PNLAS    SAATPRTLGTLDMT DKGWRELFVPPELL S AVTEAGPLQLTLLV
Sbjct: 1136 MGWARKFCESDDGRFPSDESGEGISLGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRHAESNRVLRVKRHPPASGHGEDNAERHEDEWASVARQGVKGCRLRIGTKKEVASALAATFAGLTKQPNLASTSTSSAATPRTLGTLDMTTDKGWRELFVPPELLVSTAVTEAGPLQLTLLV 1316
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13902.2866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9H7_9PHAE1.390e-11487.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKL9_ECTSI1.240e-9487.29Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13902contigE-fasciculatus_F_contig13902:12..2571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.1
Seed ortholog evalue2.5e-83
Seed eggNOG ortholog2880.D8LKL9
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size637
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13902.2866.1prot_E-fasciculatus_F_contig13902.2866.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13902 12..2571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927882.7520328-CDS-E-fasciculatus_F_contig13902:11..1481622927882.7520328-CDS-E-fasciculatus_F_contig13902:11..148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 12..148 +
1695995736.6736357-CDS-E-fasciculatus_F_contig13902:11..1481695995736.6736357-CDS-E-fasciculatus_F_contig13902:11..148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 12..148 +
1622927882.76794-CDS-E-fasciculatus_F_contig13902:326..4531622927882.76794-CDS-E-fasciculatus_F_contig13902:326..453Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 327..453 +
1695995736.6928186-CDS-E-fasciculatus_F_contig13902:326..4531695995736.6928186-CDS-E-fasciculatus_F_contig13902:326..453Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 327..453 +
1622927882.7787218-CDS-E-fasciculatus_F_contig13902:1083..12111622927882.7787218-CDS-E-fasciculatus_F_contig13902:1083..1211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 1084..1211 +
1695995736.706419-CDS-E-fasciculatus_F_contig13902:1083..12111695995736.706419-CDS-E-fasciculatus_F_contig13902:1083..1211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 1084..1211 +
1622927882.7916737-CDS-E-fasciculatus_F_contig13902:1962..20981622927882.7916737-CDS-E-fasciculatus_F_contig13902:1962..2098Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 1963..2098 +
1695995736.715701-CDS-E-fasciculatus_F_contig13902:1962..20981695995736.715701-CDS-E-fasciculatus_F_contig13902:1962..2098Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 1963..2098 +
1622927882.807176-CDS-E-fasciculatus_F_contig13902:2463..25711622927882.807176-CDS-E-fasciculatus_F_contig13902:2463..2571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 2464..2571 +
1695995736.724693-CDS-E-fasciculatus_F_contig13902:2463..25711695995736.724693-CDS-E-fasciculatus_F_contig13902:2463..2571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13902 2464..2571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13902.2866.1

>prot_E-fasciculatus_F_contig13902.2866.1 ID=prot_E-fasciculatus_F_contig13902.2866.1|Name=mRNA_E-fasciculatus_F_contig13902.2866.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=212bp
MGWARKFCGADDGRFPPDESEEGIALGKVLAEHVVHDGDVGLVGTSPPTL
LVHGLCIRVRHGESNRVLRVKRHPPASGDDEDNAERHQDEWAAVARQGVQ
GCRLRTGTKKEVASALAATFAGLSKEPNLASSAATPRTLGTLDMTADKGW
RELFVPPELLASNAVTEAGPLQLTLLVTFVEVSAQFLPGDCFVSSEFTTV
DHQGERATFEWV
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mRNA from alignment at E-fasciculatus_F_contig13902:12..2571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13902.2866.1 ID=mRNA_E-fasciculatus_F_contig13902.2866.1|Name=mRNA_E-fasciculatus_F_contig13902.2866.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2560bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13902:12..2571+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGTGGGCGAGGAAATTCTGCGGGGCCGACGACGGCCGTTTTCCCCC
TGACGAAAGCGAGGAAGGTATTGCTCTGGGCAAGGTGCTGGCGGAACACG
TGGTACATGACGGGGACGTGGGCCTGGTAGGGACCAGGTGAGGGTCACTC
TACGACGTACAGAAGTCTGGCAATGCATGGGTGCAGTCGCAACGAAGAAC
TGACGGCTGTTGCCGTTGTCAGAGGTTTGCGTGGTCTGCTTAACTAATCC
CGGTATCTGAAGCCTCCCTCTCGTTGGCATGTTGGTCCCGTCGCTTTGAT
GGACCAATCGAACAGCCCACCGACGTTGCTAGTGCATGGCTTATGCATCC
GCGTGAGACACGGGGAGAGCAATCGCGTCCTGAGGGTCAAGCGACACCCA
CCGGCCAGCGGCGACGACGAGGACAACGCCGAACGACATCAGGTGATCCA
TCGGGTTGCATGAAAGATAAGTTCGTTCAACTCACGCCATGTTCCACGTT
TTGTCTCGTTCGTCACCAAGACCCTTCACAATCCTTGAATAGATTGTTCA
GATTATGTGGGAGTATCTGGACACTGCTACAAAGCATATTGATTGTTTCC
TGTGTGTTCTCCTGTTCAAATGCCGTACAATCAGCTGAAAACCGCCTTGC
GCCCCCCGAGGAAGAACAATCTTGACACCCATTCCTCCCGCTGAACATGT
GCCGAGCAATGCCTAGAGCACGCGCAGCCCATCCCGTCCTCCACTCCTAA
CACGACGAAACGTACATGTTCTCAAACACTGCTCTCGCCAGAGTTCACTG
AAATATGCATACGACGACCCGGTGGTGTAGGGAAGAGTTTGGCTGCGTTT
GTGATCGGCCGGGTGTGGGTAGCGTGGTTGGTCTGGTCTCTATTTATAAC
AATGACATCAATTGGAGCTACGGTTTACTCTAAGCCAAACACTCTTGTCG
TCCTACGTGCGTGGGACACAGACGGCTGCGAACATCGAGGTTGATGAAAA
TTGCTCCGTCGCTATCTAAACTGTTCCCGTTCCTTGCTGATGATACCGAC
CAAATCACACCTTCGAGACTAGGACGAGTGGGCTGCGGTAGCTCGACAAG
GGGTGCAGGGGTGTCGCTTGAGGACCGGCACCAAGAAAGAAGTGGCGTCC
GCGCTGGCGGCGACTTTTGCCGGTCTCTCCAAAGAGCCGAACCTGGCTAG
GTGCGATACGCTACACGGGCTGCTCCTGTCGTATGTACTTGAGAACGTTG
AAGGTTTCGAAACTTACGTGAGGGATATGTTGCAAAGGCAAACTGGGGGT
TGTCACTCTCTTGTCCAAAAACCTGCGTTCGGCGCCTGCGTGTGTTTTGG
CTCAGGTGCTCCCCACAGCAGTAGACAGAGGCGAGGGCATCATAGTGATT
TGCACTACGGTCCACTAGGTTTAATGTACAATGCCTGCCATAAAACAACT
ACACAACAGCACGCGTTTTCGATTCAGCGCAGCCTCCTGTCGCTCCGCGG
TCTCTGCGTGATGTGCTTGTCCCTTGTGCCTAAACGTATAATAGCCTTTG
TACTACACCTTGTCTTTAGGAGGATAGCTCCTATTTTGTCCAAACACGTT
CCTGCCGCGTAAAATGTTCCGACAATCTTCGACTCATATTGCAATACACG
AATGCCACCCGGCACCCTCGACATGACAAGCGTTTCCGGAGTTATTGCTA
TGTCGACCCATCCCGGTATTGGTCGTGGAGAAAGAATGAAGATTTTCCCA
TCGTCTCATTGTCATGTCGTAGCACTTACTGTGTATTTCGATAACTTTCC
TCCACGAACCAGGATAAAAGAACAACCTCCGGACGAAGCCATTGGAAGCG
CATCGAAATTCGTAGACTAAACAACGAAGACAATCAATGTATGTGCTTCG
CCTGGGGAGTACTCACATAACCATCACTTCCCTGCGAACTTGCGGCAGCA
GCAGTGCGGCCACGCCGCGTACCCTTGGCACGTTGGACATGACCGCGGAC
AAAGGATGGCGAGAGCTTTTCGTCCCGCCAGAGCTCTTAGCTTCGAATGC
CGTCACGGAGGCCGGGCCGCTGCAGCTAACGCTCTTGGTAAGCACCTAGT
CGCTTTGTGTAGTCGCCAATCCCTTGAAACCCTTTGCATGACGGACCGAG
CTAATGGGGACGGGTCTCACTTTGGCTCCCTAAGTCGATTCCTTCATCAA
GCCCGTACGGATCCCCATTACCTAAAAACAGCATGGTGGCCCACACGAAG
CGATGAAGCTCGGACGCCCTTGCTTACCTGTAAAAACCTGACAAAACCCC
AACACTGAACAGCGTAACGAGTTGAAGCTTGGCGGACAATGGACGCGAAG
GTGGCATCCGAAAGCGCTGGTGCTATTCTCTGTCTTCACTTCGTGCACGA
TTTTTCGATGTACAGACATGGGCATGCTCGTGCGTTCTTTCCGGTGTGGC
AGGTAACATTTGTGGAGGTGTCGGCGCAGTTCTTGCCGGGCGACTGCTTC
GTTTCGTCGGAGTTCACCACCGTGGATCACCAAGGAGAGAGGGCCACCTT
CGAGTGGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13902:12..2571+

>mRNA_E-fasciculatus_F_contig13902.2866.1 ID=mRNA_E-fasciculatus_F_contig13902.2866.1|Name=mRNA_E-fasciculatus_F_contig13902.2866.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1272bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13902:12..2571+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGTGGGCGAGGAAATTCTGCGGGGCCGACGACGGCCGTTTTCCCCC
TGACGAAAGCGAGGAAGGTATTGCTCTGGGCAAGGTGCTGGCGGAACACG
TGGTACATGACGGGGACGTGGGCCTGGTAGGGACCAGATGGGGTGGGCGA
GGAAATTCTGCGGGGCCGACGACGGCCGTTTTCCCCCTGACGAAAGCGAG
GAAGGTATTGCTCTGGGCAAGGTGCTGGCGGAACACGTGGTACATGACGG
GGACGTGGGCCTGGTAGGGACCAGCCCACCGACGTTGCTAGTGCATGGCT
TATGCATCCGCGTGAGACACGGGGAGAGCAATCGCGTCCTGAGGGTCAAG
CGACACCCACCGGCCAGCGGCGACGACGAGGACAACGCCGAACGACATCA
GCCCACCGACGTTGCTAGTGCATGGCTTATGCATCCGCGTGAGACACGGG
GAGAGCAATCGCGTCCTGAGGGTCAAGCGACACCCACCGGCCAGCGGCGA
CGACGAGGACAACGCCGAACGACATCAGGACGAGTGGGCTGCGGTAGCTC
GACAAGGGGTGCAGGGGTGTCGCTTGAGGACCGGCACCAAGAAAGAAGTG
GCGTCCGCGCTGGCGGCGACTTTTGCCGGTCTCTCCAAAGAGCCGAACCT
GGCTAGGACGAGTGGGCTGCGGTAGCTCGACAAGGGGTGCAGGGGTGTCG
CTTGAGGACCGGCACCAAGAAAGAAGTGGCGTCCGCGCTGGCGGCGACTT
TTGCCGGTCTCTCCAAAGAGCCGAACCTGGCTAGCAGTGCGGCCACGCCG
CGTACCCTTGGCACGTTGGACATGACCGCGGACAAAGGATGGCGAGAGCT
TTTCGTCCCGCCAGAGCTCTTAGCTTCGAATGCCGTCACGGAGGCCGGGC
CGCTGCAGCTAACGCTCTTGCAGTGCGGCCACGCCGCGTACCCTTGGCAC
GTTGGACATGACCGCGGACAAAGGATGGCGAGAGCTTTTCGTCCCGCCAG
AGCTCTTAGCTTCGAATGCCGTCACGGAGGCCGGGCCGCTGCAGCTAACG
CTCTTGGTAACATTTGTGGAGGTGTCGGCGCAGTTCTTGCCGGGCGACTG
CTTCGTTTCGTCGGAGTTCACCACCGTGGATCACCAAGGAGAGAGGGCCA
CCTTCGAGTGGGTAGTAACATTTGTGGAGGTGTCGGCGCAGTTCTTGCCG
GGCGACTGCTTCGTTTCGTCGGAGTTCACCACCGTGGATCACCAAGGAGA
GAGGGCCACCTTCGAGTGGGTA
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