mRNA_E-fasciculatus_F_contig1390.2864.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1390.2864.1
Unique NamemRNA_E-fasciculatus_F_contig1390.2864.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: D7FHZ1_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ1_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 2.970e-56
Identity = 84/90 (93.33%), Postives = 89/90 (98.89%), Query Frame = 2
Query:  371 MIEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHFEGVAKRSKQQAG 640
            MIEKDTMCLLDFYVHE++QR+GLGLDLF++ALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHFEG AKRSKQQAG
Sbjct:    1 MIEKDTMCLLDFYVHESVQRRGLGLDLFKSALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHFEGAAKRSKQQAG 90          
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: A0A835Z9U1_9STRA (Alpha-tubulin N-acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9U1_9STRA)

HSP 1 Score: 148 bits (373), Expect = 3.280e-41
Identity = 80/178 (44.94%), Postives = 108/178 (60.67%), Query Frame = 2
Query:   95 NTIFEPGISRWTAEKLGSLDARSSEAFDKALNEMGQLSSKAQQQTTPLTTADKIRAKDDILYIACDG-TGGTMQGFLRLGRKYLFLYPDDNGSMIEKDTMCLLDFYVHET---LQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHFEGVA 616
            +  F PG+S W       L A+  +    AL E+G LS++AQ    P+TT  ++   +  LY+ CD  TG T  G+LR+G K L+L  D    +  +D +CLLDFYVH      QRQG+G  LF A LK E +T  ++AYDRPSPKL+PFL +H+GL   +DQPNRFMVF ++F   A
Sbjct:    5 SATFGPGLSVWDTTTPRQLSAQQQDVATAALAELGALSAQAQGLKEPITTLQQLVTSEHRLYVMCDEVTGRTCYGYLRVGVKRLYL-TDGAAPLRPRDALCLLDFYVHHRQVWCQRQGMGRRLFNAMLKSENVTAEQLAYDRPSPKLRPFLKRHYGLAQGIDQPNRFMVFPQYFRADA 181          
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: A0A7S0DC76_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DC76_MICPS)

HSP 1 Score: 127 bits (320), Expect = 1.770e-32
Identity = 69/175 (39.43%), Postives = 99/175 (56.57%), Query Frame = 2
Query:   98 TIFEPGISRWTAEKLGSLDARSSEAFDKALNEMGQLSSKAQQQTTPLTTADKIRAKDDILYIACDGTGGTMQG------FLRLGRKYLFLYPDDNGSMIEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHF 604
            T   PG++ WTAE + SL           ++E G LS++AQ   T +T+ D++  +D I+Y+ CD T   ++G       L+ G K LF++     + IE +  C+LDFYVHET QR+G+G  LF   L++E   P  +AYDRPS K   FL KH GL    +Q N F+VF  +F
Sbjct:   46 TGLTPGVTAWTAESIASLPPGERRTMAALVDEAGVLSARAQALPTAITSTDRL-TRDQIVYLCCDETTNPVRGPTNVLGVLKTGDKNLFIHRGGASTPIEMEPRCVLDFYVHETAQRRGIGALLFAFFLRDENKHPARLAYDRPSEKFLAFLAKHHGLVKYQNQTNNFVVFDAYF 219          
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: A0A7S3G4C9_9EUKA (Alpha-tubulin N-acetyltransferase n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G4C9_9EUKA)

HSP 1 Score: 130 bits (326), Expect = 5.010e-32
Identity = 66/172 (38.37%), Postives = 104/172 (60.47%), Query Frame = 2
Query:  116 ISRWTAEKLGSLDARSSEAFDKALNEMGQLSSKAQQQTTPLTTADKIRAKDDILYIACDGTGGTMQGFLRLGRKYLFLYPDDNGSMIEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHFEGVAKRSKQ 631
            I++  A     L+   ++  D  L++MG  S KAQ+    +T+   +R  D  +YI       T+ GF+++G+K LF+  DD+    E   MC+LDFYVHE++QR+G+G  LF   L+ EG  P ++AYDRPSPKL  FL KHF L +   Q N ++V+K++F G +++ ++
Sbjct:   17 IAKLDAATYRGLNREQTDQLDDVLDKMGMASKKAQKLPKAITSGHLLRCSDHTVYICVQNKDRTVLGFIKMGKKTLFI-RDDSARFHEIKPMCVLDFYVHESMQRKGIGKKLFLYMLQCEGKQPHQLAYDRPSPKLLAFLAKHFNLKHYTPQENNYVVYKQYFTGGSQQQEK 187          
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: U5ELP6_9DIPT (Alpha-tubulin N-acetyltransferase n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5ELP6_9DIPT)

HSP 1 Score: 127 bits (318), Expect = 5.910e-32
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = 2
Query:  131 AEKLGSLDARSSEAFDKALNEMGQLSSKAQQQTTPLTTADKIRAKDDILYIACDGT--GGTMQGFLRLGRKYLFLYPDDNGSMIEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHFEG 610
            A + G+LDA +     + +N +GQLS+ AQ  T P+TT+ K+R  D  +Y+  +     G + G+L++G+K L+++ D NG        CLLDFY+HE+ QR GLGL LF+  L  EG+ P E+A DRPS KL  FL KH+GL+  + Q N F+V++  F G
Sbjct:   30 ASRRGALDATAQ--ISEIINYIGQLSAAAQGLTNPVTTSQKLRNSDHSIYLLFEPNDKNGLVVGYLKIGKKSLYVF-DQNGETQNVAAPCLLDFYIHESRQRTGLGLILFQYMLDNEGIRPEELAIDRPSEKLLGFLQKHYGLYKKIPQMNNFVVYEGFFTG 188          
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: UPI0006B6FC0A (alpha-tubulin N-acetyltransferase 1 n=1 Tax=Pseudopodoces humilis TaxID=181119 RepID=UPI0006B6FC0A)

HSP 1 Score: 126 bits (317), Expect = 6.730e-32
Identity = 65/142 (45.77%), Postives = 98/142 (69.01%), Query Frame = 2
Query:  185 LNEMGQLSSKAQQQTTPLTTADKIRAKDDILYIACDGTG--GTMQGFLRLGRKYLFLYPDDNGSMIEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHF 604
            ++E+G+ S+KAQ  +TP+T+A ++ +   +LYI  D     G + GFL++G K LFL  D +GS +E + +C+LDFY+HE+ QR+GLG++LFR  L+ E + P ++A DRPS KL  FL KHFGL N + Q N F++F+  F
Sbjct:   44 IDELGKASAKAQGLSTPVTSAARMESNRHVLYILRDTRSPKGAVLGFLKVGYKKLFLL-DRDGSHVEVEPLCVLDFYIHESQQRRGLGMELFREMLQRERVQPEKLAVDRPSEKLLGFLRKHFGLCNLIPQVNNFVIFEGFF 184          
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: A0A6A4J3L9_APOLU (Alpha-tubulin N-acetyltransferase n=2 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4J3L9_APOLU)

HSP 1 Score: 126 bits (316), Expect = 7.630e-32
Identity = 73/189 (38.62%), Postives = 113/189 (59.79%), Query Frame = 2
Query:   74 MDLSFMKNTIFEPGISRWT----AEKLGSLDARS----SEAFDKALNEMGQLSSKAQQQTTPLTTADKIRAKDDILYIACD---GTGGTMQGFLRLGRKYLFLYPDDNGSMIEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHFE 607
            M++++   TIF+  I++ T     E   + D R+    S+     L+EMG LS+KAQ    P+T+ +K+R  D  +Y+  D    +GG + G L++GRK L+++ D  G   E+D++C+LDFY+HE++QR GLG  LF   L+ E + P  +A DRPS K   FL KH+GL + + Q N F+VF   F+
Sbjct:    1 MNVNYPLRTIFKHDITKITNALLPEDFTTADKRTFRIASDVVINILDEMGILSAKAQDLQKPITSWEKLRNSDHHVYLLFDRGDDSGGFVMGLLKVGRKNLYVF-DLEGECHERDSLCVLDFYIHESVQRTGLGRKLFEHMLEHENIRPERLAIDRPSHKFLLFLQKHYGLSDVVSQSNNFVVFTAFFD 188          
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: A0A672LI60_SINGR (Alpha-tubulin N-acetyltransferase 1 n=16 Tax=Cyprininae TaxID=2743694 RepID=A0A672LI60_SINGR)

HSP 1 Score: 126 bits (317), Expect = 1.220e-31
Identity = 68/145 (46.90%), Postives = 94/145 (64.83%), Query Frame = 2
Query:  185 LNEMGQLSSKAQQQTTPLTTADKIRAKDDILYIACDGTG----GTMQGFLRLGRKYLFLYPDDNGSMIEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHFE 607
            ++E+G+ SSKAQQ   P+T+A K++A    LY+  DG      G + GFL++G K LFL  D  G+ +E + +C+LDFYV ETLQR G GL+LF   LK + + P ++AYDRPSPK   FL KH+ L N + Q N F+VF   F+
Sbjct:   42 IDELGKASSKAQQLPAPITSAAKLQANRHHLYLLKDGEQNGGRGVIFGFLKVGYKKLFLL-DQRGAHLETEPLCVLDFYVTETLQRHGYGLELFDFMLKHKRVEPEQMAYDRPSPKFLSFLEKHYDLKNSVPQVNNFVVFSGFFQ 185          
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: A0A2R6WT51_MARPO (Alpha-tubulin N-acetyltransferase n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WT51_MARPO)

HSP 1 Score: 127 bits (319), Expect = 1.850e-31
Identity = 68/168 (40.48%), Postives = 99/168 (58.93%), Query Frame = 2
Query:  116 ISRWTAEKLGSLDARSSEAFDKALNEMGQLSSKAQQQTTPLTTADKIRAKDDILYIACDGTGGTMQ-----GFLRLGRKYLFLYPDDNGSMIEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHF 604
            IS W A +L  L  R  E     ++ MG+LS++AQ   TP+T   +++A    LY+   G  G  +     G L++GRK LF+  D NG ++E   +C+LDFYVHE+ QR GLG +LF   L +E  +  E+ YDRPS K   FL K++ L   L Q N+++VFK++F
Sbjct:   19 ISVWNAAQLALLSFREQEDMRNIIDGMGRLSAQAQHLRTPITDYGRLKAGSHTLYLCTTGVQGKPELVLAKGMLKVGRKNLFIRKD-NGQLVEMSPLCVLDFYVHESCQRMGLGHELFETMLSKEKASARELGYDRPSSKFHSFLEKYYHLTEFLPQANQYVVFKDYF 185          
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Match: UPI001863EB5E (alpha-tubulin N-acetyltransferase 1 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001863EB5E)

HSP 1 Score: 126 bits (316), Expect = 2.000e-31
Identity = 65/144 (45.14%), Postives = 92/144 (63.89%), Query Frame = 2
Query:  185 LNEMGQLSSKAQQQTTPLTTADKIRAKDDILYIACDGTG----GTMQGFLRLGRKYLFLYPDDNGSMIEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKLKPFLGKHFGLHNCLDQPNRFMVFKEHF 604
            ++E+G+ S+KAQQ   P+TTA K++     LY+  +G      G   GFL++G K LFL  D  G+ +E + +C+LDF+V E LQR G GL+LF   L+ + + P  +AYDRPSPK   FLGKH+GL +C+ Q N F+VF   F
Sbjct:   42 IDELGKASAKAQQLAAPITTAVKLQTNRHHLYLLKEGESNGGKGVAVGFLKVGYKKLFLL-DQQGAHVETEPLCVLDFFVTENLQRHGYGLELFSFMLQHKRVEPVRMAYDRPSPKFLSFLGKHYGLKDCVPQVNNFVVFDGFF 184          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1390.2864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHZ1_ECTSI2.970e-5693.33N-acetyltransferase domain-containing protein n=1 ... [more]
A0A835Z9U1_9STRA3.280e-4144.94Alpha-tubulin N-acetyltransferase n=1 Tax=Tribonem... [more]
A0A7S0DC76_MICPS1.770e-3239.43Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S3G4C9_9EUKA5.010e-3238.37Alpha-tubulin N-acetyltransferase n=1 Tax=Palpitom... [more]
U5ELP6_9DIPT5.910e-3242.59Alpha-tubulin N-acetyltransferase n=1 Tax=Corethre... [more]
UPI0006B6FC0A6.730e-3245.77alpha-tubulin N-acetyltransferase 1 n=1 Tax=Pseudo... [more]
A0A6A4J3L9_APOLU7.630e-3238.62Alpha-tubulin N-acetyltransferase n=2 Tax=Apolygus... [more]
A0A672LI60_SINGR1.220e-3146.90Alpha-tubulin N-acetyltransferase 1 n=16 Tax=Cypri... [more]
A0A2R6WT51_MARPO1.850e-3140.48Alpha-tubulin N-acetyltransferase n=1 Tax=Marchant... [more]
UPI001863EB5E2.000e-3145.14alpha-tubulin N-acetyltransferase 1 n=1 Tax=Megalo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1390contigE-fasciculatus_F_contig1390:11588..14246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue4.6e-44
Seed eggNOG ortholog2880.D7FHZ1
KEGG koko:K19573
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0019799,GO:0032886,GO:0033043,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050789,GO:0050794,GO:0051128,GO:0051493,GO:0061733,GO:0065007,GO:0070507,GO:0071704,GO:0071929,GO:1901564
EggNOG free text desc.alpha-tubulin acetylation
EggNOG OGsKOG4601@1,KOG4601@2759
EC2.3.1.108
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcyl-CoA N-acyltransferase
Ec32 orthologEc-12_006430.1
Exons5
Model size706
Cds size570
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927882.440525-UTR-E-fasciculatus_F_contig1390:11587..116601622927882.440525-UTR-E-fasciculatus_F_contig1390:11587..11660Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1390 11588..11660 +
1695995736.5506146-UTR-E-fasciculatus_F_contig1390:11587..116601695995736.5506146-UTR-E-fasciculatus_F_contig1390:11587..11660Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1390 11588..11660 +
1622927882.582131-UTR-E-fasciculatus_F_contig1390:14183..142461622927882.582131-UTR-E-fasciculatus_F_contig1390:14183..14246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1390 14184..14246 +
1695995736.618562-UTR-E-fasciculatus_F_contig1390:14183..142461695995736.618562-UTR-E-fasciculatus_F_contig1390:14183..14246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1390 14184..14246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927882.46665-CDS-E-fasciculatus_F_contig1390:11660..117301622927882.46665-CDS-E-fasciculatus_F_contig1390:11660..11730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 11661..11730 +
1695995736.5629563-CDS-E-fasciculatus_F_contig1390:11660..117301695995736.5629563-CDS-E-fasciculatus_F_contig1390:11660..11730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 11661..11730 +
1622927882.4799929-CDS-E-fasciculatus_F_contig1390:11993..120641622927882.4799929-CDS-E-fasciculatus_F_contig1390:11993..12064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 11994..12064 +
1695995736.5733933-CDS-E-fasciculatus_F_contig1390:11993..120641695995736.5733933-CDS-E-fasciculatus_F_contig1390:11993..12064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 11994..12064 +
1622927882.4942245-CDS-E-fasciculatus_F_contig1390:12400..125411622927882.4942245-CDS-E-fasciculatus_F_contig1390:12400..12541Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 12401..12541 +
1695995736.5838778-CDS-E-fasciculatus_F_contig1390:12400..125411695995736.5838778-CDS-E-fasciculatus_F_contig1390:12400..12541Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 12401..12541 +
1622927882.5613887-CDS-E-fasciculatus_F_contig1390:13424..135381622927882.5613887-CDS-E-fasciculatus_F_contig1390:13424..13538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 13425..13538 +
1695995736.5961251-CDS-E-fasciculatus_F_contig1390:13424..135381695995736.5961251-CDS-E-fasciculatus_F_contig1390:13424..13538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 13425..13538 +
1622927882.5714366-CDS-E-fasciculatus_F_contig1390:14009..141831622927882.5714366-CDS-E-fasciculatus_F_contig1390:14009..14183Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 14010..14183 +
1695995736.6099823-CDS-E-fasciculatus_F_contig1390:14009..141831695995736.6099823-CDS-E-fasciculatus_F_contig1390:14009..14183Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 14010..14183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1390.2864.1prot_E-fasciculatus_F_contig1390.2864.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1390 11661..14183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1390.2864.1

>prot_E-fasciculatus_F_contig1390.2864.1 ID=prot_E-fasciculatus_F_contig1390.2864.1|Name=mRNA_E-fasciculatus_F_contig1390.2864.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=190bp
MDLSFMKNTIFEPGISRWTAEKLGSLDARSSEAFDKALNEMGQLSSKAQQ
QTTPLTTADKIRAKDDILYIACDGTGGTMQGFLRLGRKYLFLYPDDNGSM
IEKDTMCLLDFYVHETLQRQGLGLDLFRAALKEEGLTPTEIAYDRPSPKL
KPFLGKHFGLHNCLDQPNRFMVFKEHFEGVAKRSKQQAG*
back to top

mRNA from alignment at E-fasciculatus_F_contig1390:11588..14246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1390.2864.1 ID=mRNA_E-fasciculatus_F_contig1390.2864.1|Name=mRNA_E-fasciculatus_F_contig1390.2864.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2659bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1390:11588..14246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGACTAGCACGCACTGATCCCTTAATCAGTTCACCCCTCCCATCAAACC CCAGGCGATATCGCGGCAGGGCAATGGATCTATCCTTTATGAAAAACACC ATTTTTGAACCTGGCATATCTCGCTGGACCGCCGAAAAATTAGGTGAGGT CACAGCAGTGTCTACAGCAGTATCTACGAAACGATACACCATCACCGAGA CACACATGGCGCTGTATCTTTTCATGTTATGTTCCTGGTAGCCCGCACGA CACCTTGACCCATTTCCTGAACCCCACCTACACCTTATCCCAACCACAGG TGCACGCCAGCACAGGAAACACCGTGTGTGCTTTTTTATGTGCTCGGGTA TTCGAAATGCGGCCGGCATGCGACTCACACCGTTACGCTTGGTGGATTTG CTGCAGGTTCTTTAGACGCACGAAGCTCCGAGGCGTTCGACAAGGCCCTG AATGAAATGGGACAACTATCGAGCAAGGTACAGACATCACTCATATAGGC GGTGGTTGCGCGAGATGTAAATGTATTGTGTGTTGTGAACCCACAGGGCA AATACATACATGACCACAAGGGTCGGTTTTATCTCTCGGTGCTTTACGCG TGACAAATATTCCAGGACCGTTGTTGTATTGTAGCTTGGGAAGATTTTGT TCGACTTTGTACGTTCGCCAATAATATTCGTCCTACCGATTTTTCTTATA GCTCCCCCGACACAAACATGAGCGGACGCAAAGCTTTGTAGGCCACCCTG TGCCTCGGGCCCCATAAACATGTGTGTGGTGGCTCATGACATTAACACGG CTACTTGCCCCAGGCGCAACAGCAAACAACGCCACTGACAACGGCGGACA AGATTCGGGCAAAGGATGATATCTTGTACATCGCATGTGACGGTACTGGA GGTACCATGCAAGGCTTCCTGCGGCTGGGACGGAAGTACCTATTTTTGTA CCCGGTGAGCGTAAGAAAGAGTATACGCACCTATGCGCCGTGTGATTTCG CAACGGTCTTTACCGCGGGTCGTCACGTTACAGCATTTGGTATTCTCACC ACGAACAAGCGCACTTTCCGAACCCGGCCAAAGTTCGAACACCTGACCTC GATCTTGCAGCGCTTTAAGTACACTTTTCGAGCTTGAAAGTGACCAATGT ACGAAAACGTCAGAGCTCTGTCCACAAGAAGGAAGCCTTTCGGTGTGCCA ACATTTGAATGCGGAGGAAGCCATACCAATCGTATGAGTTTAGTTAGCCT TGCACATCAACGTACAATCGAGGGGGGGGATCTTGTCCACTCGACAAACT CAACAAAATTTGAGAACGTAAAACCAGCACTTTAGGTTCGACACACCAGT CAACCACATGCTGTCTGACCATAGACTGTTCTTTCTTCCTTCATGATTAC CCAATCACTCATCAACAATTGACCGAAACGGCATTCAGACTACAGTACTC GCGACTCTCACGGAGGATTAATCTACAGGGGCAAGTGAAGCAAACAACTT TTCGTTCATCGGTGAAATGGTTCTCAGTCTCACGGGCCCACAAAGATGCT TTGGGCACCCCGACCGCACACGAAATTTCCCTCGACGGGGTTTAGGTGTG ACGTCTTAATCGATCGTGCTGTCCGTCCCTGTACGCACAAGAAATGAATA CTCATTAGTCACGGGAGGAGATGCAAACAGAGTACAAACACACCAGCAAG GGCAGAGACGCAAAACGTTTACTCCTACCACACGCGGAAGTGAATTAGTA TCACCTGGCATTCCCCAGTCACAGCTAAACAACCTTCTCTCTTTGATACA CGTTGGCCCCTTTCTGCTGGAACATCGCGGGCATCAGGACGACAACGGAT CAATGATCGAGAAGGACACTATGTGCCTCCTGGATTTCTATGTGCACGAG ACTTTGCAAAGGCAAGGCCTTGGCCTCGACCTGTTCAGAGCAGCTTTGAA GGTGGGGATATACGGGACTCAGCGCTACCGTCCGTGCGACCTTGACAGTC GTGGGCGGACGAGGAGGCGATCTTGCAATAATTGCGTCTATCATGAATGA CCTACCGCTCTTACAAGGCACCCCGCCGTACCAGAAACGCAAGTTTCCTG AAAGCACGTACATAGAGACTGCGAACGGTCGGCTCGCGTCCTTGCTGGGC CTTGTGAGACCCATCCACAGGCTCCCGGCCAAGGTATCACACGACATGTT CCGAATAGTCATTTCCTCGAAAGCCGATGAAGGGCGATGTCTCGGAGGGA CGAGTTTGTTCAACAGCATCCCGTTAATCAGTTCTGCAGCAGTTGCAACA CACGCGCCTGCTCTCGGAAGAAACTGATCCTGTCGCCTCAGACAGAAACT GAACACAGCACCAAAAGTCTGAGAGGTGAGCTACTGCGTCCAACCTTCTC CTCGCGCGCCCGCATTCGACAGGAGGAAGGGCTAACGCCCACGGAGATCG CGTACGACAGACCGTCCCCGAAGCTGAAGCCCTTCCTTGGCAAGCACTTC GGTCTTCACAATTGTTTGGACCAGCCCAACCGCTTTATGGTGTTCAAAGA ACACTTCGAGGGGGTCGCCAAGCGGTCGAAACAGCAAGCGGGCTAGGTTC TCGGCGCAATCGAGTGACTTGGTTGACGTGGCAGTTGTGAACGTGCTTGG GAAAGTGGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1390:11588..14246+

>mRNA_E-fasciculatus_F_contig1390.2864.1 ID=mRNA_E-fasciculatus_F_contig1390.2864.1|Name=mRNA_E-fasciculatus_F_contig1390.2864.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1390:11588..14246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATCTATCCTTTATGAAAAACACCATTTTTGAACCTGGCATATCTCG
CTGGACCGCCGAAAAATTAGATGGATCTATCCTTTATGAAAAACACCATT
TTTGAACCTGGCATATCTCGCTGGACCGCCGAAAAATTAGGTTCTTTAGA
CGCACGAAGCTCCGAGGCGTTCGACAAGGCCCTGAATGAAATGGGACAAC
TATCGAGCAAGGTTCTTTAGACGCACGAAGCTCCGAGGCGTTCGACAAGG
CCCTGAATGAAATGGGACAACTATCGAGCAAGGCGCAACAGCAAACAACG
CCACTGACAACGGCGGACAAGATTCGGGCAAAGGATGATATCTTGTACAT
CGCATGTGACGGTACTGGAGGTACCATGCAAGGCTTCCTGCGGCTGGGAC
GGAAGTACCTATTTTTGTACCCGGCGCAACAGCAAACAACGCCACTGACA
ACGGCGGACAAGATTCGGGCAAAGGATGATATCTTGTACATCGCATGTGA
CGGTACTGGAGGTACCATGCAAGGCTTCCTGCGGCTGGGACGGAAGTACC
TATTTTTGTACCCGGACGACAACGGATCAATGATCGAGAAGGACACTATG
TGCCTCCTGGATTTCTATGTGCACGAGACTTTGCAAAGGCAAGGCCTTGG
CCTCGACCTGTTCAGAGCAGCTTTGAAGGACGACAACGGATCAATGATCG
AGAAGGACACTATGTGCCTCCTGGATTTCTATGTGCACGAGACTTTGCAA
AGGCAAGGCCTTGGCCTCGACCTGTTCAGAGCAGCTTTGAAGGAGGAAGG
GCTAACGCCCACGGAGATCGCGTACGACAGACCGTCCCCGAAGCTGAAGC
CCTTCCTTGGCAAGCACTTCGGTCTTCACAATTGTTTGGACCAGCCCAAC
CGCTTTATGGTGTTCAAAGAACACTTCGAGGGGGTCGCCAAGCGGTCGAA
ACAGCAAGCGGGCTAGGAGGAAGGGCTAACGCCCACGGAGATCGCGTACG
ACAGACCGTCCCCGAAGCTGAAGCCCTTCCTTGGCAAGCACTTCGGTCTT
CACAATTGTTTGGACCAGCCCAACCGCTTTATGGTGTTCAAAGAACACTT
CGAGGGGGTCGCCAAGCGGTCGAAACAGCAAGCGGGCTAG
back to top