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Homology
BLAST of mRNA_E-fasciculatus_F_contig1390.2863.1 vs. uniprot
Match: D7FHZ2_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ2_ECTSI) HSP 1 Score: 620 bits (1600), Expect = 3.260e-215 Identity = 358/406 (88.18%), Postives = 371/406 (91.38%), Query Frame = 1
Query: 1 SSGAGQTRELVVKQAERVARHTLVADISKLEERLSDDEREYEAKAEERQXXXXXXXXXXXXAAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAMKFELGQLANVGKGGGKATPPANGGSSTSVHRHKTLKDDDLVPDDSVDNGEQEKVVEVLGGEGLDLSYLWVVDAGRVLSRSKKSASDTEGSSHTAKGGTTTDS-QGAEQRRPGDDRVSDNDGSKGVETEQVSGTHAAKDEGGGSVPHDKTSGKKTQVSTNGGGGGGESLVGSLELGKGGGETAPPSCAPEAQVDDKAEKRARNTEKRGEAGGGLSGDNGDARPEQPQVKKRKGRLVPGSLVLTSVSASDLPDTEKGVFSKQDPYLVARWGEQEVRTSAKRDSGKACSWVKEEVALLVRTKKQLQEPIEIE 1215
SSGAGQTRELVVKQAERVARHTLVADISKLEER+SDDEREYEAKA ERQ XXXXXXXXX AAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAMKFELGQLANVGKG GKATP ANGGSSTSVHRHKTLKDDDLVPDDSVDNGEQE+V +VLGGEGLDLSYLWVVDAG+VLSRS KS SDTEGSSHTAKGGTTTDS Q AEQRRPGDDRVS N ++GVE EQ SG HAAK EG G +P DK SGKK++ +TNGGG E+LVGSLELG GGGE A PS A QVD KAEKRARNTEKRGEAGGG +GDNGDARPEQPQVKKRKGRLVPGSLVLTSVSA+DLPDTEKGVFSKQDPYLVARWGEQEVRTSAKRDSGKACSWVKEEVALLVRTKKQLQEPIEIE
Sbjct: 6 SSGAGQTRELVVKQAERVARHTLVADISKLEERISDDEREYEAKAAERQKEXXXXXXXXXEAAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAMKFELGQLANVGKGAGKATP-ANGGSSTSVHRHKTLKDDDLVPDDSVDNGEQEEVEDVLGGEGLDLSYLWVVDAGKVLSRSNKSTSDTEGSSHTAKGGTTTDSEQEAEQRRPGDDRVSGNGDAEGVENEQGSGAHAAKKEGDGRLPLDKASGKKSRDATNGGG---ENLVGSLELGDGGGENAQPSIA---QVDTKAEKRARNTEKRGEAGGGRAGDNGDARPEQPQVKKRKGRLVPGSLVLTSVSAADLPDTEKGVFSKQDPYLVARWGEQEVRTSAKRDSGKACSWVKEEVALLVRTKKQLQEPIEIE 404
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1227 |
| Cds size | 1227 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1390.2863.1 >prot_E-fasciculatus_F_contig1390.2863.1 ID=prot_E-fasciculatus_F_contig1390.2863.1|Name=mRNA_E-fasciculatus_F_contig1390.2863.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=409bp
SSGAGQTRELVVKQAERVARHTLVADISKLEERLSDDEREYEAKAEERQK
EQRRKEQELKEAAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAMKFE
LGQLANVGKGGGKATPPANGGSSTSVHRHKTLKDDDLVPDDSVDNGEQEK
VVEVLGGEGLDLSYLWVVDAGRVLSRSKKSASDTEGSSHTAKGGTTTDSQ
GAEQRRPGDDRVSDNDGSKGVETEQVSGTHAAKDEGGGSVPHDKTSGKKT
QVSTNGGGGGGESLVGSLELGKGGGETAPPSCAPEAQVDDKAEKRARNTE
KRGEAGGGLSGDNGDARPEQPQVKKRKGRLVPGSLVLTSVSASDLPDTEK
GVFSKQDPYLVARWGEQEVRTSAKRDSGKACSWVKEEVALLVRTKKQLQE
PIEIEASD* back to topmRNA from alignment at E-fasciculatus_F_contig1390:7585..10893- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1390.2863.1 ID=mRNA_E-fasciculatus_F_contig1390.2863.1|Name=mRNA_E-fasciculatus_F_contig1390.2863.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3309bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1390:7585..10893- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGTCTGGAGCAGGTCAAACGCGCGAACTTGTCGTCAAGCAGGCGGAGAG
GGTTGCGCGCCACACGCTGGTTGCGGATATCAGCAAGCTCGAGGAAAGGC
TTTCCGACGGTGAGTCTGTTGCACCATACTCACGCGTGTAGACTGCATGT
TTACGTGTATATTCCTGCGATCCTTGAGTTGAACAGAGCTTAGTTATAGC
TCCAGTGTTGCTAGAGTTAACCCCTCTGTGGATGACAAGCTCAATGAAAC
AGTATCACAAGAGTCCTCGACTGTCCACGGGGACCTTTTCAGTCACAGGC
GGAAGTATCGATAAGAACCCTGGTTTGGAGCGAGGTGGACAGCTGCGATG
AACGGTTGGAAGACTTTAATTGGTCCTTGCTGCTGCGGACTTTGCCCTCT
CTTATACCTGCCCCTTCCTGTCGGGTTCTCGGCGCTCCGTACCTACCCAT
TCCTCGTGTCTAAAAGACGAACGCGAATACGAAGCCAAGGCTGAAGAAAG
ACAGAAGGAGCAGCGTCGAAAGGAACAGGAATTGAAGGAAGCGGCCATAC
AGAATGTCGTGTCCGGAGCTAGCAGCAAGGTGACTAGTTTGGTGAAACCA
GCGCTACTTCATCGCCTGCGCTCAAACAGCGGCCTGCCACGTGGCGCACG
CGCGGTAGTTCACAGAAGTAACGAGTGCCAACCATTTAAAACCCGTAGGT
GAACAGATTTGCGGACCATACGGAAGACAATCGAATTGAGCTATGATGTG
GATCGACCCGCCAAACCCTGTGAACGCGGCACGGATTTCTTTGTCGCCTG
AAAATACTGTTCAACGGAATCTGCCCTCCCCAGCTCTCAGGCAACTTGTT
CGACAGGATGCAGGGCCTCGCAAAGCTTCATGAATCCGCCAAATCGGCCA
TGAAATTCGAACTTGGGCAACTGGCCAACGTGGGAAAGGGCGGGGGCAAG
GCCACACCGCCAGCGAACGGAGGGTCTTCGACCTCAGGTGCACTCAGACG
AACTCCCTAAAACACAATTGAACACATCAGGGCGAGGGGATGATGCCATC
TCGAAGACGCTTGCATAATATCAGACAAAGAAAACAGAAATGTTAGAAGA
AACAAAGCTATATACAACCTGGGGACATAGAAAACCACCAAAAGGCATTT
CGAGCTGAAGTCAGATGGCCAGGATATCCAGCGCAACGAAGAGGATATGT
CAACACGTACACATCGCAAAGAAAGCTGCACGAAAAGGCCCTGATCGATT
AAGAACCTCTTGGCGGGTCCGCTCTACGCAACGTCCGCCTCCGCTCGACC
CGTTCACCCTTTGCACACAACACGCCTTTCCTGCCCGTAGGTGCGAGCGA
GCCGAAAATGCCGCTGCCGGGGGCATCGTCGGTCGTGGTGAAGGTGGTGC
ATCCCGCCTACGTGTCCGCCCTGAGAGCCAAGCTTCGCCGGAGTCTGGGC
ATCCCCCTCGAGGACGTTAGGTATTTGGAGGGAAGCTGGCGCTCGGACGA
CATTTATGATTTGAACCCCCGCTTGTGTGTGCCGTCGAGCAGGCGTTGGT
GGTAGATGATGCGCGATGTTCTGGCGTGCAAACGTGATACATTTTGGTCA
TAAAGCTCTCGAAGTAGGATATGCAGCTGTTGTTTTGATGGTGACATGCA
TCACGAATAGGAGCCTCCAAAGGTCTCCGTTCCTATCTCGGCCTGAACAC
CCTTGCACCCGCCCCCGCCAACAACTGCGCCCCCCTTCTCCAGGATAGTG
CACCGCCACAAAACGCTCAAAGACGACGATCTAGTCCCGGACGACTCGGT
GGACAACGGAGAGCAGGAAAAAGTAGTAGAAGTGCTGGGCGGGGAAGGTC
TCGACTTGAGCTACCTCTGGGTGGTGGACGCGGGAAGAGTGTTGTCTCGA
TCGAAGAAATCCGCCTCCGACACGGAAGGCTCATCCCACACCGCTAAAGG
GGGCACTACTACCGACTCTCAGGTGAAGATTCAATACGAGCGGGCGGGGT
GCGGCAAGGCACGGGCATCCGACACATCCCTGCCACCGCTAGACGGTGTA
CCGTTGCGGTGTGCCTCCATGTGGGCAGCGAGCGGCCTCATGTGGGGCTC
GGCAGCATGTCTATCACTAGCGACACGGTTGGCCACCCTTTGTTCTCGCA
CTGCTCACTCGTATGTTTGCTTGTAAGACGATGTTGCCCTACTGGGATTT
CGGCATATTTCGCCACAACCGCACTCAGCATGGAACGGCGAGGCGCTCTT
AGCCACTATTACATCGAAAAGCACGCATTTAATTTCGCGCTCAGGCGGAA
ACAATCTGACTGCGTCCCACCAGATGCATTCGCAATGATTGATTCCATCG
CGAGAATCAAAAATTTCCTGGAAGATGTAATGGGCGTGCGCGGTCAACGT
GTTAGCCAGGTGCTATCGTGCTTCCGTGCCCTCCTTGTCGGTTTCTGGTA
CCCTGCTGCAGGGGGCAGAGCAACGAAGGCCAGGAGACGACCGAGTAAGC
GACAACGACGGTTCCAAAGGGGTCGAAACCGAGCAAGTCAGCGGCACCCA
CGCAGCGAAGGATGAAGGCGGCGGTAGTGTACCCCATGACAAAACAAGTG
GCAAGAAAACACAAGTTTCCACCAACGGCGGCGGCGGCGGCGGTGAATCT
CTCGTTGGTTCCCTCGAACTCGGAAAAGGAGGCGGCGAAACCGCACCACC
GAGCTGTGCGCCGGAAGCTCAGGTGGACGACAAAGCGGAAAAGCGGGCTC
GCAACACAGAGAAGCGCGGAGAAGCTGGCGGCGGCCTTTCCGGCGACAAC
GGCGACGCACGACCTGAGCAGCCGCAAGTTAAAAAACGCAAGGGGAGGCT
CGTTCCCGGAAGCTTGGTGTTGACGTCTGTGTCGGCGTCGGACCTGCCGG
ATACAGAGAAGGGGGTGTTCTCCAAACAGGTGTGCCCTCAATTGTCTCGC
GATTGCACACAGCCACCGACCCGAGACATGAAAGGATCTCCTTGCAAGTT
AAGATAGCAAGATATATATCCTGGCAATATCTCGTTGATCGGGGCGCCTC
CGTCTATTTCGTGCCGTTATTGTCTACCCCATGGGGGCATGCCCCCTGCA
TGCCTGAACATCTTCTTCTGATCTTTCTGTGGCCTCCTTCGTTCGGCTAG
GACCCGTATCTCGTGGCCAGGTGGGGGGAACAGGAGGTCAGGACGAGCGC
CAAGCGCGACTCCGGCAAGGCCTGCTCGTGGGTGAAGGAAGAGGTTGCGC
TCCTTGTCCGCACGAAGAAGCAGCTCCAAGAGCCGATAGAGATCGAGGCG
AGTGACTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1390:7585..10893- >mRNA_E-fasciculatus_F_contig1390.2863.1 ID=mRNA_E-fasciculatus_F_contig1390.2863.1|Name=mRNA_E-fasciculatus_F_contig1390.2863.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2454bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1390:7585..10893- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGTCTGGAGCAGGTCAAACGCGCGAACTTGTCGTCAAGCAGGCGGAGAG
GGTTGCGCGCCACACGCTGGTTGCGGATATCAGCAAGCTCGAGGAAAGGC
TTTCCGACGTCGTCTGGAGCAGGTCAAACGCGCGAACTTGTCGTCAAGCA
GGCGGAGAGGGTTGCGCGCCACACGCTGGTTGCGGATATCAGCAAGCTCG
AGGAAAGGCTTTCCGACGACGAACGCGAATACGAAGCCAAGGCTGAAGAA
AGACAGAAGGAGCAGCGTCGAAAGGAACAGGAATTGAAGGAAGCGGCCAT
ACAGAATGTCGTGTCCGGAGCTAGCAGCAAGACGAACGCGAATACGAAGC
CAAGGCTGAAGAAAGACAGAAGGAGCAGCGTCGAAAGGAACAGGAATTGA
AGGAAGCGGCCATACAGAATGTCGTGTCCGGAGCTAGCAGCAAGCTCTCA
GGCAACTTGTTCGACAGGATGCAGGGCCTCGCAAAGCTTCATGAATCCGC
CAAATCGGCCATGAAATTCGAACTTGGGCAACTGGCCAACGTGGGAAAGG
GCGGGGGCAAGGCCACACCGCCAGCGAACGGAGGGTCTTCGACCTCAGCT
CTCAGGCAACTTGTTCGACAGGATGCAGGGCCTCGCAAAGCTTCATGAAT
CCGCCAAATCGGCCATGAAATTCGAACTTGGGCAACTGGCCAACGTGGGA
AAGGGCGGGGGCAAGGCCACACCGCCAGCGAACGGAGGGTCTTCGACCTC
AGTGCACCGCCACAAAACGCTCAAAGACGACGATCTAGTCCCGGACGACT
CGGTGGACAACGGAGAGCAGGAAAAAGTAGTAGAAGTGCTGGGCGGGGAA
GGTCTCGACTTGAGCTACCTCTGGGTGGTGGACGCGGGAAGAGTGTTGTC
TCGATCGAAGAAATCCGCCTCCGACACGGAAGGCTCATCCCACACCGCTA
AAGGGGGCACTACTACCGACTCTCAGTGCACCGCCACAAAACGCTCAAAG
ACGACGATCTAGTCCCGGACGACTCGGTGGACAACGGAGAGCAGGAAAAA
GTAGTAGAAGTGCTGGGCGGGGAAGGTCTCGACTTGAGCTACCTCTGGGT
GGTGGACGCGGGAAGAGTGTTGTCTCGATCGAAGAAATCCGCCTCCGACA
CGGAAGGCTCATCCCACACCGCTAAAGGGGGCACTACTACCGACTCTCAG
GGGGCAGAGCAACGAAGGCCAGGAGACGACCGAGTAAGCGACAACGACGG
TTCCAAAGGGGTCGAAACCGAGCAAGTCAGCGGCACCCACGCAGCGAAGG
ATGAAGGCGGCGGTAGTGTACCCCATGACAAAACAAGTGGCAAGAAAACA
CAAGTTTCCACCAACGGCGGCGGCGGCGGCGGTGAATCTCTCGTTGGTTC
CCTCGAACTCGGAAAAGGAGGCGGCGAAACCGCACCACCGAGCTGTGCGC
CGGAAGCTCAGGTGGACGACAAAGCGGAAAAGCGGGCTCGCAACACAGAG
AAGCGCGGAGAAGCTGGCGGCGGCCTTTCCGGCGACAACGGCGACGCACG
ACCTGAGCAGCCGCAAGTTAAAAAACGCAAGGGGAGGCTCGTTCCCGGAA
GCTTGGTGTTGACGTCTGTGTCGGCGTCGGACCTGCCGGATACAGAGAAG
GGGGTGTTCTCCAAACAGGGGGCAGAGCAACGAAGGCCAGGAGACGACCG
AGTAAGCGACAACGACGGTTCCAAAGGGGTCGAAACCGAGCAAGTCAGCG
GCACCCACGCAGCGAAGGATGAAGGCGGCGGTAGTGTACCCCATGACAAA
ACAAGTGGCAAGAAAACACAAGTTTCCACCAACGGCGGCGGCGGCGGCGG
TGAATCTCTCGTTGGTTCCCTCGAACTCGGAAAAGGAGGCGGCGAAACCG
CACCACCGAGCTGTGCGCCGGAAGCTCAGGTGGACGACAAAGCGGAAAAG
CGGGCTCGCAACACAGAGAAGCGCGGAGAAGCTGGCGGCGGCCTTTCCGG
CGACAACGGCGACGCACGACCTGAGCAGCCGCAAGTTAAAAAACGCAAGG
GGAGGCTCGTTCCCGGAAGCTTGGTGTTGACGTCTGTGTCGGCGTCGGAC
CTGCCGGATACAGAGAAGGGGGTGTTCTCCAAACAGGACCCGTATCTCGT
GGCCAGGTGGGGGGAACAGGAGGTCAGGACGAGCGCCAAGCGCGACTCCG
GCAAGGCCTGCTCGTGGGTGAAGGAAGAGGTTGCGCTCCTTGTCCGCACG
AAGAAGCAGCTCCAAGAGCCGATAGAGATCGAGGCGAGTGACTGAGACCC
GTATCTCGTGGCCAGGTGGGGGGAACAGGAGGTCAGGACGAGCGCCAAGC
GCGACTCCGGCAAGGCCTGCTCGTGGGTGAAGGAAGAGGTTGCGCTCCTT
GTCCGCACGAAGAAGCAGCTCCAAGAGCCGATAGAGATCGAGGCGAGTGA
CTGA back to top
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