mRNA_E-fasciculatus_F_contig1390.2861.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1390.2861.1
Unique NamemRNA_E-fasciculatus_F_contig1390.2861.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1390.2861.1 vs. uniprot
Match: D7FHZ2_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 5.780e-42
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:   64 KVDVWLDHADRFKNGAIPREAVKTVIRDALLLNGLPSPRESDAKISLQHASTDDQGLRFDRSKLGVELEHLIRKELFIL 300
            KVDVWLDHADRFKNGAIPREAVKTVIRDALLLNGLPSPRESDAKISLQHASTDDQGLRFDRSKLGVELEHLIR+ELFIL
Sbjct:  739 KVDVWLDHADRFKNGAIPREAVKTVIRDALLLNGLPSPRESDAKISLQHASTDDQGLRFDRSKLGVELEHLIRRELFIL 817
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1390.2861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHZ2_ECTSI5.780e-4298.73C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1390contigE-fasciculatus_F_contig1390:488..1485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size467
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1390.2861.1prot_E-fasciculatus_F_contig1390.2861.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1390 652..1485 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927882.218039-UTR-E-fasciculatus_F_contig1390:487..6511622927882.218039-UTR-E-fasciculatus_F_contig1390:487..651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1390 488..651 -
1695995736.439155-UTR-E-fasciculatus_F_contig1390:487..6511695995736.439155-UTR-E-fasciculatus_F_contig1390:487..651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1390 488..651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927882.2552607-CDS-E-fasciculatus_F_contig1390:651..8881622927882.2552607-CDS-E-fasciculatus_F_contig1390:651..888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 652..888 -
1695995736.4533854-CDS-E-fasciculatus_F_contig1390:651..8881695995736.4533854-CDS-E-fasciculatus_F_contig1390:651..888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 652..888 -
1622927882.270563-CDS-E-fasciculatus_F_contig1390:1419..14851622927882.270563-CDS-E-fasciculatus_F_contig1390:1419..1485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 1420..1485 -
1695995736.4691067-CDS-E-fasciculatus_F_contig1390:1419..14851695995736.4691067-CDS-E-fasciculatus_F_contig1390:1419..1485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1390 1420..1485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1390.2861.1

>prot_E-fasciculatus_F_contig1390.2861.1 ID=prot_E-fasciculatus_F_contig1390.2861.1|Name=mRNA_E-fasciculatus_F_contig1390.2861.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
AFQLERSAAHRLEERVKETSSKVDVWLDHADRFKNGAIPREAVKTVIRDA
LLLNGLPSPRESDAKISLQHASTDDQGLRFDRSKLGVELEHLIRKELFIL
*
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mRNA from alignment at E-fasciculatus_F_contig1390:488..1485-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1390.2861.1 ID=mRNA_E-fasciculatus_F_contig1390.2861.1|Name=mRNA_E-fasciculatus_F_contig1390.2861.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=998bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1390:488..1485- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCTTCCAGCTGGAGAGAAGCGCGGCGCACAGGTTGGAAGAGCGCGTGAA
GGAGACATCGAGCAAGGTGCGCATACCCTTCTCTCTCTGGCTGGTGCAAT
GGACGTTTTAGGTTTTTCGCAACAGACACTGTTCGCTCGAGTTAGCACTA
TCCTGCTGCTTGCTCCCCTCTTGGGTTTATACCTTGATCCAAGACCACTC
CAGAGGAATAGGTGTACCTATTCTGTCTGTTTAAACGTCGTTTAACGCAC
AAAGTCTACATGATGCGTAGCTCATGGCGTAGGCAATCGGTGGATATGGC
CTTATCACACCAGCGCGCATCTCATAGCCCCCCGTCACAGGCAGCAGATT
TTTGTCGTTGGCTAGACACGCAGAATCAATCGCGTTCACGTTCGTTCGTT
GTTCGGGCGTGACGTGAGAGTAGAGAACGCAAAACAAGCGTGAAATATGG
AAATTGGTTAATGCACGTTCTAAATGTCTCCTTGCGAAAAGACCCACTGA
AGTGGCGTTGGGCATACATAAAACCTCAAACGAGCCTGATACTTTCTTTC
ACGTGGCATACTACCGGCCCAACCATCGCCCCCCTCCCCCCCGCAAGGTT
GACGTTTGGTTAGACCATGCCGATCGCTTCAAGAACGGAGCGATACCAAG
AGAAGCGGTCAAGACGGTCATAAGGGACGCCCTTCTCCTCAACGGGCTGC
CGTCCCCGCGAGAGTCCGACGCCAAGATCAGCCTGCAGCACGCCTCCACG
GACGACCAGGGGCTGCGCTTCGACCGGAGCAAGCTCGGGGTTGAGCTGGA
ACATCTCATTCGCAAAGAGTTGTTTATTCTTTGACGTATGTATGCGTATG
TGCCTGTCATGTGGCAGCGCAGCACGTACGCCGCGTAGAGAAGAAATGGC
CCAGGCACGTTGACAAAAAGAGTAACGGCCGACGATCTGGACCAGCTCCA
AGAACAAGGTGTTGACATAGATAGATCGTATAAGTTCGCGAACGGATT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1390:488..1485-

>mRNA_E-fasciculatus_F_contig1390.2861.1 ID=mRNA_E-fasciculatus_F_contig1390.2861.1|Name=mRNA_E-fasciculatus_F_contig1390.2861.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1390:488..1485- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCTTCCAGCTGGAGAGAAGCGCGGCGCACAGGTTGGAAGAGCGCGTGAA
GGAGACATCGAGCAAGGCCTTCCAGCTGGAGAGAAGCGCGGCGCACAGGT
TGGAAGAGCGCGTGAAGGAGACATCGAGCAAGGTTGACGTTTGGTTAGAC
CATGCCGATCGCTTCAAGAACGGAGCGATACCAAGAGAAGCGGTCAAGAC
GGTCATAAGGGACGCCCTTCTCCTCAACGGGCTGCCGTCCCCGCGAGAGT
CCGACGCCAAGATCAGCCTGCAGCACGCCTCCACGGACGACCAGGGGCTG
CGCTTCGACCGGAGCAAGCTCGGGGTTGAGCTGGAACATCTCATTCGCAA
AGAGTTGTTTATTCTTTGAGTTGACGTTTGGTTAGACCATGCCGATCGCT
TCAAGAACGGAGCGATACCAAGAGAAGCGGTCAAGACGGTCATAAGGGAC
GCCCTTCTCCTCAACGGGCTGCCGTCCCCGCGAGAGTCCGACGCCAAGAT
CAGCCTGCAGCACGCCTCCACGGACGACCAGGGGCTGCGCTTCGACCGGA
GCAAGCTCGGGGTTGAGCTGGAACATCTCATTCGCAAAGAGTTGTTTATT
CTTTGA
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