mRNA_E-fasciculatus_F_contig13895.2856.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13895.2856.1
Unique NamemRNA_E-fasciculatus_F_contig13895.2856.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: A0A6H5L0T1_9PHAE (PAP-associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T1_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 9.630e-62
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 2
Query:    2 LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAPP-QVAAAVPGAP 313
            LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAPP QVAAAVPGAP
Sbjct:   23 LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAPPTQVAAAVPGAP 127          
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 3.380e-56
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 2
Query:    2 LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAPP-QVAAAVPGAP 313
            LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAPP QVAAAVPGAP
Sbjct: 1810 LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAPPPQVAAAVPGAP 1914          
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: A0A835ZHQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.180e-33
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 2
Query:    2 LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP 274
            L++ +PALRPLA++LKQF+ E+GL  SYTGGLSSYAL L+VARYLQEQ++ +D+GSLL GFLDF+GN FDPR TGISV R  YFSR A  P
Sbjct:  152 LIEEYPALRPLAIVLKQFLKERGLCESYTGGLSSYALVLLVARYLQEQSTHLDAGSLLRGFLDFFGNTFDPRTTGISVTRRCYFSRLAQTP 242          
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: W7U5Q9_9STRA (Nucleotidyl transferase domain protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5Q9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.710e-29
Identity = 59/82 (71.95%), Postives = 68/82 (82.93%), Query Frame = 2
Query:   20 ALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSA 265
            ALRPL L+LKQFM E+GL  SY+GGLSSY L LMVARYLQEQ++ MD+G+LLLGFLDFY NHFDPR  GIS  +  YFSRS+
Sbjct: 1174 ALRPLVLVLKQFMKERGLMESYSGGLSSYGLVLMVARYLQEQSNAMDTGALLLGFLDFYSNHFDPRSMGISTNQRCYFSRSS 1255          
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: A0A7R9W717_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W717_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.260e-28
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    8 DGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQT-SQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR 259
            + +P +RPL L+LKQF++++GL  +YTGGLSSY L LMV RYLQEQ  S  D G+LL+GFLDFYGN F+PR TGISV R +YFSR
Sbjct:    1 EEYPMVRPLVLVLKQFLLDRGLLTAYTGGLSSYCLFLMVTRYLQEQPLSWNDCGTLLMGFLDFYGNSFEPRSTGISVKRRQYFSR 85          
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: A0A7S1U3N8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.290e-28
Identity = 61/88 (69.32%), Postives = 67/88 (76.14%), Query Frame = 2
Query:    2 LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQM--DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR 259
            L+   P LRPL L+LKQF  EKGLS SYTGG+SSYALTL+VARYLQE       D GSLLLGFLDFYG+ FDPR TG+SV R  YFSR
Sbjct:  230 LLAALPPLRPLTLILKQFCKEKGLSASYTGGISSYALTLLVARYLQETLGHSGGDLGSLLLGFLDFYGSKFDPRTTGVSVRRGVYFSR 317          
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: A0A1Z5KF72_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF72_FISSO)

HSP 1 Score: 117 bits (294), Expect = 1.450e-28
Identity = 61/98 (62.24%), Postives = 74/98 (75.51%), Query Frame = 2
Query:    2 LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPL--PAPPQV 289
            ++D  P +RPL L+LKQF+  +GL  +YTGGLS+Y L LMVARYLQEQ S  D GSLL+GFLDFYGN+FDPR TGISV   +YFSR + +  PAP  V
Sbjct: 1253 IMDELPVMRPLLLILKQFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSTGISVKNRQYFSRLSAVMGPAPQSV 1350          
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: A0A1Z5KCZ8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCZ8_FISSO)

HSP 1 Score: 116 bits (291), Expect = 3.690e-28
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 2
Query:    2 LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR-SAPLPAPPQ 286
            ++D  P +RPL L+LKQF+  +GL  +YTGGLS+Y L LMVARYLQEQ S  D GSLL+GFLDFYGN+FDPR  GISV   +YFSR SA + A PQ
Sbjct: 1254 IMDELPVIRPLLLILKQFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSIGISVKNRQYFSRLSAAMGAAPQ 1349          
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: B7G2A8_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2A8_PHATC)

HSP 1 Score: 113 bits (283), Expect = 4.430e-27
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 2
Query:    2 LVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQ-TSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR 259
            +++  P LRPL L+LKQF++++GL  +YTGGLSSY L LMVARYLQEQ TS  D GSLL+GFLDFYGN FDPR TGISV   +YF R
Sbjct: 1263 ILEELPMLRPLVLILKQFLLDRGLLTAYTGGLSSYCLFLMVARYLQEQQTSWGDCGSLLMGFLDFYGNCFDPRTTGISVRHRQYFPR 1349          
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Match: A0A448Z158_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z158_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.870e-26
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 2
Query:    5 VDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQT-SQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRS 262
            ++  P LRPL L+LKQ +  +GL  +YTGGLSSY L LM+ARYLQEQ  S  D GSLL+GFLDFYGNHFDPR  GISVG  +YF+R+
Sbjct: 1319 LEELPLLRPLMLVLKQLLSHRGLLTAYTGGLSSYCLFLMLARYLQEQPLSNSDYGSLLMGFLDFYGNHFDPRAMGISVGGRQYFARA 1405          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13895.2856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0T1_9PHAE9.630e-6299.05PAP-associated domain-containing protein n=1 Tax=E... [more]
D7FHG7_ECTSI3.380e-5699.05LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZHQ3_9STRA5.180e-3369.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U5Q9_9STRA5.710e-2971.95Nucleotidyl transferase domain protein n=4 Tax=Mon... [more]
A0A7R9W717_9STRA1.260e-2864.71Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1U3N8_9STRA1.290e-2869.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Z5KF72_FISSO1.450e-2862.24Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KCZ8_FISSO3.690e-2863.54Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
B7G2A8_PHATC4.430e-2766.67Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A448Z158_9STRA2.870e-2664.37Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13895contigE-fasciculatus_F_contig13895:1215..2395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size317
Cds size315
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13895.2856.1prot_E-fasciculatus_F_contig13895.2856.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13895 1215..2395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927881.0732825-CDS-E-fasciculatus_F_contig13895:1214..14001622927881.0732825-CDS-E-fasciculatus_F_contig13895:1214..1400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13895 1215..1400 -
1695995735.7821712-CDS-E-fasciculatus_F_contig13895:1214..14001695995735.7821712-CDS-E-fasciculatus_F_contig13895:1214..1400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13895 1215..1400 -
1622927881.0879316-CDS-E-fasciculatus_F_contig13895:1844..19211622927881.0879316-CDS-E-fasciculatus_F_contig13895:1844..1921Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13895 1845..1921 -
1695995735.7982745-CDS-E-fasciculatus_F_contig13895:1844..19211695995735.7982745-CDS-E-fasciculatus_F_contig13895:1844..1921Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13895 1845..1921 -
1622927881.1081514-CDS-E-fasciculatus_F_contig13895:2343..23951622927881.1081514-CDS-E-fasciculatus_F_contig13895:2343..2395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13895 2344..2395 -
1695995735.8082683-CDS-E-fasciculatus_F_contig13895:2343..23951695995735.8082683-CDS-E-fasciculatus_F_contig13895:2343..2395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13895 2344..2395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13895.2856.1

>prot_E-fasciculatus_F_contig13895.2856.1 ID=prot_E-fasciculatus_F_contig13895.2856.1|Name=mRNA_E-fasciculatus_F_contig13895.2856.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
PGGWFPGAAAAGALAQTVHDGERTVCQLHRRAVVVRAYAHGRKISSRADQ
PDGLGLSPAWLPGLLRQPLRSATHRHQCRPQPLLLQERAPARATPGGGGS
SRGP*
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mRNA from alignment at E-fasciculatus_F_contig13895:1215..2395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13895.2856.1 ID=mRNA_E-fasciculatus_F_contig13895.2856.1|Name=mRNA_E-fasciculatus_F_contig13895.2856.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1181bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13895:1215..2395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTGGTGGATGGTTTCCCGGCGCTGCGGCCGCTGGCGCTCTTGCTCAAAC AGGTGTGTGTTTGTCTTTCTTAGTTAGCATCAGCCGCGCTGACCGGCTGA CCCATGAAACGCCGTCAGTCTTGTAGCGGAGTGAAAAGGACGAACACTTC AAATCCAAGGGTAAGTGTGTGTGTGTTTTTTTTACCGTGTGTAGGGATGG TCAATTCAGTTAACTACTTTGCTCAATACGGCAGATGTTTGATGCGGTAC TGCTTCTACAGGTGCAGTGCAACACTCTAGCGGATGCAGCTAGGCGTTGT GGGCCGAAGACCCTATTAGCACGGTAGAAGACTACGACTAGCAGCATGGC ATTGGCTCGCTTGGTACGGACTACATGTCTTTAACTTTAACTCCTTCTGA GAGTTAAAGTTTGTTGAACTCACCAACTGCCCCGTCGCCGTGCCCCCCCC CCCGTTCCCCCTCGTTCGCCAAAGTTCATGATGGAGAAAGGACTGTCTGT CAGCTACACCGGAGGGCTGTCGTCGTACGCGCTTACGCTCATGGTCGCAA GGTGCGCAGGTCTCTGGGGGATATAAGTAAAACGACCACGCGCCTTCGCG CCGCAGCAGAACGAACGGACGGAGCAATCGTACGTGTAGCGCCGTTATTT TGTAAGAATTAACACTGTTTTGACGACGAGGGTCTCGCCAGTCGTTGTGG TCGTCTAACCCCCGGCTGATTGTCTTTGAATTTTTTTAGGCGCTGTTCCA TTTGGTTGTTGTCTGGACGGAGCTGTATTTTTTCTCTTTTTGGGATGAAT GACGATGTCCCCCCCCCCGCCCGAAAAAAGGCGACAGAAATCAACGTTCG AAAATTCCGAAAAAAAGAAAGATGTGATGATGACCCGAACGTCCCCCCGT TTTCTGCGCCCGCCCCGTCTCGGCCAACCCTTACGACGACGCCCACGACT ATCATCACCTCGAAACGAAAAATGTTCAACGACGGCTCCAAAAAGATATC TTCAAGAGCAGACCAGCCAGATGGACTCGGGCTCTCTCCTGCTTGGCTTC CTGGACTTCTACGGCAACCACTTCGATCCGCGACTCACCGGCATCAGTGT CGGCCGCAGCCGTTACTTCTCCAGGAGCGCGCCCCTGCCCGCGCCACCCC AGGTGGCGGCGGCAGTTCCCGGGGCCCCTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13895:1215..2395-

>mRNA_E-fasciculatus_F_contig13895.2856.1 ID=mRNA_E-fasciculatus_F_contig13895.2856.1|Name=mRNA_E-fasciculatus_F_contig13895.2856.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13895:1215..2395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTGGTGGATGGTTTCCCGGCGCTGCGGCCGCTGGCGCTCTTGCTCAAAC
AGCCTGGTGGATGGTTTCCCGGCGCTGCGGCCGCTGGCGCTCTTGCTCAA
ACAGTTCATGATGGAGAAAGGACTGTCTGTCAGCTACACCGGAGGGCTGT
CGTCGTACGCGCTTACGCTCATGGTCGCAAGTTCATGATGGAGAAAGGAC
TGTCTGTCAGCTACACCGGAGGGCTGTCGTCGTACGCGCTTACGCTCATG
GTCGCAAGATATCTTCAAGAGCAGACCAGCCAGATGGACTCGGGCTCTCT
CCTGCTTGGCTTCCTGGACTTCTACGGCAACCACTTCGATCCGCGACTCA
CCGGCATCAGTGTCGGCCGCAGCCGTTACTTCTCCAGGAGCGCGCCCCTG
CCCGCGCCACCCCAGGTGGCGGCGGCAGTTCCCGGGGCCCCTAGATATCT
TCAAGAGCAGACCAGCCAGATGGACTCGGGCTCTCTCCTGCTTGGCTTCC
TGGACTTCTACGGCAACCACTTCGATCCGCGACTCACCGGCATCAGTGTC
GGCCGCAGCCGTTACTTCTCCAGGAGCGCGCCCCTGCCCGCGCCACCCCA
GGTGGCGGCGGCAGTTCCCGGGGCCCCTAG
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