mRNA_E-fasciculatus_F_contig13894.2855.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13894.2855.1
Unique NamemRNA_E-fasciculatus_F_contig13894.2855.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13894.2855.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.430e-78
Identity = 170/194 (87.63%), Postives = 175/194 (90.21%), Query Frame = 1 
Query:    1 NMAMLEARPTYRLLQTYSLLSAVLRKVPVARSSXXXXXXXXXXXXXXXXXGQALFSTVMPAELNKKELTKGVLSGSPLLQAATMNLMATILDRASLVAAAAAATIAGSPPSPLGVVEMKALLRQRMPDLQTLLGLRDKIGVGVGDAAGKVPGGQHVGRAVVLRWRVLSLLDRYARVIPASVAAARFDFLKLLPR 582
            N AMLEARPTYRLLQTYSLLS VLRKVPVA S XXXXXXXXXXXXXX   GQALFSTVMPAELNKKELT+GVLSGSPLLQAATMNLMA ILDR+SLVAAAAA    GS PSP GVV+MK LLRQRMPDLQTLLGLRDKIGVG GDA+ K PGGQHV RAVVLRWRVLSLLDRYARVIP+SVAAARFDFLKLLPR
Sbjct:  545 NTAMLEARPTYRLLQTYSLLSTVLRKVPVAGSXXXXXXXXXXXXXXXA--GQALFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMAGILDRSSLVAAAAA----GSSPSPPGVVDMKRLLRQRMPDLQTLLGLRDKIGVGAGDAS-KAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPR 731
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BLAST of mRNA_E-fasciculatus_F_contig13894.2855.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 2.360e-77
Identity = 164/194 (84.54%), Postives = 170/194 (87.63%), Query Frame = 1 
Query:    1 NMAMLEARPTYRLLQTYSLLSAVLRKVPVARSSXXXXXXXXXXXXXXXXXGQALFSTVMPAELNKKELTKGVLSGSPLLQAATMNLMATILDRASLVAAAAAATIAGSPPSPLGVVEMKALLRQRMPDLQTLLGLRDKIGVGVGDAAGKVPGGQHVGRAVVLRWRVLSLLDRYARVIPASVAAARFDFLKLLPR 582
            N A+LEARPTYRLLQTYSLLSAVLRKVPVA SS     XXXXXXXXX   GQALFSTVMPAELNKKELT+GVLSGS LLQAATMNLMA+ILDRASLV AAAA    GS PSP GVVEMK LLRQRMPDLQTLLGLRDKIGVG GD + KV GGQHV RAVVLRWRVLSLLDRYAR+IP+SVAAARFDFLKLLPR
Sbjct:  528 NTAILEARPTYRLLQTYSLLSAVLRKVPVAGSSPLSEEXXXXXXXXXA--GQALFSTVMPAELNKKELTRGVLSGSTLLQAATMNLMASILDRASLVVAAAA----GSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDGS-KVTGGQHVDRAVVLRWRVLSLLDRYARLIPSSVAAARFDFLKLLPR 714
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13894.2855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8A9_ECTSI1.430e-7887.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K182_9PHAE2.360e-7784.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13894contigE-fasciculatus_F_contig13894:2223..2804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.8
Seed ortholog evalue1.6e-68
Seed eggNOG ortholog2880.D7G8A9
Preferred nameURB1
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1791@1,KOG1791@2759
EC2.5.1.54,3.6.1.52
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Hectar predicted targeting categorymitochondrion
Exons1
Model size582
Cds size579
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927881.015491-CDS-E-fasciculatus_F_contig13894:2222..28011622927881.015491-CDS-E-fasciculatus_F_contig13894:2222..2801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13894 2223..2801 -
1695995735.7436364-CDS-E-fasciculatus_F_contig13894:2222..28011695995735.7436364-CDS-E-fasciculatus_F_contig13894:2222..2801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13894 2223..2801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927881.0299587-UTR-E-fasciculatus_F_contig13894:2801..28041622927881.0299587-UTR-E-fasciculatus_F_contig13894:2801..2804Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13894 2802..2804 -
1695995735.765721-UTR-E-fasciculatus_F_contig13894:2801..28041695995735.765721-UTR-E-fasciculatus_F_contig13894:2801..2804Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13894 2802..2804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13894.2855.1prot_E-fasciculatus_F_contig13894.2855.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13894 2223..2801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13894.2855.1

>prot_E-fasciculatus_F_contig13894.2855.1 ID=prot_E-fasciculatus_F_contig13894.2855.1|Name=mRNA_E-fasciculatus_F_contig13894.2855.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=193bp
MAMLEARPTYRLLQTYSLLSAVLRKVPVARSSSSGEDGGGGGGGAAAAAG
QALFSTVMPAELNKKELTKGVLSGSPLLQAATMNLMATILDRASLVAAAA
AATIAGSPPSPLGVVEMKALLRQRMPDLQTLLGLRDKIGVGVGDAAGKVP
GGQHVGRAVVLRWRVLSLLDRYARVIPASVAAARFDFLKLLPR
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mRNA from alignment at E-fasciculatus_F_contig13894:2223..2804-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13894.2855.1 ID=mRNA_E-fasciculatus_F_contig13894.2855.1|Name=mRNA_E-fasciculatus_F_contig13894.2855.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13894:2223..2804- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACATGGCCATGCTCGAGGCGCGTCCGACGTACCGCCTCCTCCAGACGTA
CTCCCTCCTCTCGGCGGTACTGAGAAAGGTTCCGGTAGCTCGCTCCTCCT
CCTCGGGTGAAGACGGCGGCGGCGGCGGCGGCGGTGCAGCTGCCGCGGCC
GGGCAAGCGTTGTTCTCGACGGTAATGCCCGCGGAGCTCAACAAGAAGGA
GCTGACGAAGGGTGTCCTGAGCGGGAGCCCGCTGCTGCAGGCCGCTACCA
TGAACCTGATGGCTACCATCCTCGACCGCGCCAGCCTCGTCGCCGCGGCC
GCTGCCGCCACCATCGCCGGTTCCCCTCCCTCGCCTCTTGGGGTGGTCGA
GATGAAAGCCCTCCTGCGACAACGCATGCCCGACCTGCAAACGCTGCTGG
GACTCCGGGACAAGATCGGCGTTGGGGTCGGCGATGCTGCTGGCAAGGTC
CCGGGGGGGCAGCACGTCGGTCGGGCAGTGGTCCTGAGGTGGCGCGTGCT
GTCGCTGCTCGACCGGTACGCCCGGGTGATCCCCGCATCGGTGGCGGCCG
CCCGGTTCGACTTCCTCAAGCTCTTGCCACGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13894:2223..2804-

>mRNA_E-fasciculatus_F_contig13894.2855.1 ID=mRNA_E-fasciculatus_F_contig13894.2855.1|Name=mRNA_E-fasciculatus_F_contig13894.2855.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1158bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13894:2223..2804- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCATGCTCGAGGCGCGTCCGACGTACCGCCTCCTCCAGACGTACTC
CCTCCTCTCGGCGGTACTGAGAAAGGTTCCGGTAGCTCGCTCCTCCTCCT
CGGGTGAAGACGGCGGCGGCGGCGGCGGCGGTGCAGCTGCCGCGGCCGGG
CAAGCGTTGTTCTCGACGGTAATGCCCGCGGAGCTCAACAAGAAGGAGCT
GACGAAGGGTGTCCTGAGCGGGAGCCCGCTGCTGCAGGCCGCTACCATGA
ACCTGATGGCTACCATCCTCGACCGCGCCAGCCTCGTCGCCGCGGCCGCT
GCCGCCACCATCGCCGGTTCCCCTCCCTCGCCTCTTGGGGTGGTCGAGAT
GAAAGCCCTCCTGCGACAACGCATGCCCGACCTGCAAACGCTGCTGGGAC
TCCGGGACAAGATCGGCGTTGGGGTCGGCGATGCTGCTGGCAAGGTCCCG
GGGGGGCAGCACGTCGGTCGGGCAGTGGTCCTGAGGTGGCGCGTGCTGTC
GCTGCTCGACCGGTACGCCCGGGTGATCCCCGCATCGGTGGCGGCCGCCC
GGTTCGACTTCCTCAAGCTCTTGCCACGCATGGCCATGCTCGAGGCGCGT
CCGACGTACCGCCTCCTCCAGACGTACTCCCTCCTCTCGGCGGTACTGAG
AAAGGTTCCGGTAGCTCGCTCCTCCTCCTCGGGTGAAGACGGCGGCGGCG
GCGGCGGCGGTGCAGCTGCCGCGGCCGGGCAAGCGTTGTTCTCGACGGTA
ATGCCCGCGGAGCTCAACAAGAAGGAGCTGACGAAGGGTGTCCTGAGCGG
GAGCCCGCTGCTGCAGGCCGCTACCATGAACCTGATGGCTACCATCCTCG
ACCGCGCCAGCCTCGTCGCCGCGGCCGCTGCCGCCACCATCGCCGGTTCC
CCTCCCTCGCCTCTTGGGGTGGTCGAGATGAAAGCCCTCCTGCGACAACG
CATGCCCGACCTGCAAACGCTGCTGGGACTCCGGGACAAGATCGGCGTTG
GGGTCGGCGATGCTGCTGGCAAGGTCCCGGGGGGGCAGCACGTCGGTCGG
GCAGTGGTCCTGAGGTGGCGCGTGCTGTCGCTGCTCGACCGGTACGCCCG
GGTGATCCCCGCATCGGTGGCGGCCGCCCGGTTCGACTTCCTCAAGCTCT
TGCCACGC
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