mRNA_E-fasciculatus_F_contig13884.2853.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13884.2853.1
Unique NamemRNA_E-fasciculatus_F_contig13884.2853.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13884.2853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13884contigE-fasciculatus_F_contig13884:3199..3501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_002810.1
Exons1
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.8333988-CDS-E-fasciculatus_F_contig13884:3198..35011622927880.8333988-CDS-E-fasciculatus_F_contig13884:3198..3501Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 3199..3501 +
1695995735.6598089-CDS-E-fasciculatus_F_contig13884:3198..35011695995735.6598089-CDS-E-fasciculatus_F_contig13884:3198..3501Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 3199..3501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13884.2853.1prot_E-fasciculatus_F_contig13884.2853.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13884 3199..3501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13884.2853.1

>prot_E-fasciculatus_F_contig13884.2853.1 ID=prot_E-fasciculatus_F_contig13884.2853.1|Name=mRNA_E-fasciculatus_F_contig13884.2853.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MTIYPYFQRKRRGDGDGDEAAAAGGGGDGGAVRVRPSDDPSTFRLYRRRR
DEGAELGGTKTEQPDRRAINREGGVEEGDGVVGSTMAGTNGGPLPLDGSS
S
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mRNA from alignment at E-fasciculatus_F_contig13884:3199..3501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13884.2853.1 ID=mRNA_E-fasciculatus_F_contig13884.2853.1|Name=mRNA_E-fasciculatus_F_contig13884.2853.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=303bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13884:3199..3501+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGATCTACCCTTATTTTCAGAGGAAGAGGCGCGGTGATGGCGACGG
CGACGAAGCAGCGGCGGCCGGCGGCGGCGGAGACGGCGGCGCGGTACGGG
TCCGACCTTCCGACGACCCCTCAACGTTTCGCCTATACCGGCGGCGGCGT
GACGAGGGAGCCGAGCTGGGCGGGACGAAGACCGAGCAGCCCGATCGCCG
AGCAATAAACCGCGAGGGTGGGGTGGAGGAGGGTGATGGGGTTGTCGGCA
GCACGATGGCTGGCACGAACGGCGGACCACTGCCGTTAGATGGGAGCAGC
AGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13884:3199..3501+

>mRNA_E-fasciculatus_F_contig13884.2853.1 ID=mRNA_E-fasciculatus_F_contig13884.2853.1|Name=mRNA_E-fasciculatus_F_contig13884.2853.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13884:3199..3501+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGATCTACCCTTATTTTCAGAGGAAGAGGCGCGGTGATGGCGACGG
CGACGAAGCAGCGGCGGCCGGCGGCGGCGGAGACGGCGGCGCGGTACGGG
TCCGACCTTCCGACGACCCCTCAACGTTTCGCCTATACCGGCGGCGGCGT
GACGAGGGAGCCGAGCTGGGCGGGACGAAGACCGAGCAGCCCGATCGCCG
AGCAATAAACCGCGAGGGTGGGGTGGAGGAGGGTGATGGGGTTGTCGGCA
GCACGATGGCTGGCACGAACGGCGGACCACTGCCGTTAGATGGGAGCAGC
AGCATGACGATCTACCCTTATTTTCAGAGGAAGAGGCGCGGTGATGGCGA
CGGCGACGAAGCAGCGGCGGCCGGCGGCGGCGGAGACGGCGGCGCGGTAC
GGGTCCGACCTTCCGACGACCCCTCAACGTTTCGCCTATACCGGCGGCGG
CGTGACGAGGGAGCCGAGCTGGGCGGGACGAAGACCGAGCAGCCCGATCG
CCGAGCAATAAACCGCGAGGGTGGGGTGGAGGAGGGTGATGGGGTTGTCG
GCAGCACGATGGCTGGCACGAACGGCGGACCACTGCCGTTAGATGGGAGC
AGCAGC
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