mRNA_E-fasciculatus_F_contig13884.2852.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13884.2852.1
Unique NamemRNA_E-fasciculatus_F_contig13884.2852.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13884.2852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13884contigE-fasciculatus_F_contig13884:29..2722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_002800.1
Exons4
Model size1284
Cds size1284
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13884.2852.1prot_E-fasciculatus_F_contig13884.2852.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13884 29..2722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.7634473-CDS-E-fasciculatus_F_contig13884:28..1171622927880.7634473-CDS-E-fasciculatus_F_contig13884:28..117Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 29..117 +
1695995735.6131673-CDS-E-fasciculatus_F_contig13884:28..1171695995735.6131673-CDS-E-fasciculatus_F_contig13884:28..117Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 29..117 +
1622927880.7759726-CDS-E-fasciculatus_F_contig13884:786..13561622927880.7759726-CDS-E-fasciculatus_F_contig13884:786..1356Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 787..1356 +
1695995735.6218266-CDS-E-fasciculatus_F_contig13884:786..13561695995735.6218266-CDS-E-fasciculatus_F_contig13884:786..1356Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 787..1356 +
1622927880.7861192-CDS-E-fasciculatus_F_contig13884:1696..17811622927880.7861192-CDS-E-fasciculatus_F_contig13884:1696..1781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 1697..1781 +
1695995735.631555-CDS-E-fasciculatus_F_contig13884:1696..17811695995735.631555-CDS-E-fasciculatus_F_contig13884:1696..1781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 1697..1781 +
1622927880.798774-CDS-E-fasciculatus_F_contig13884:2182..27221622927880.798774-CDS-E-fasciculatus_F_contig13884:2182..2722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 2183..2722 +
1695995735.6433928-CDS-E-fasciculatus_F_contig13884:2182..27221695995735.6433928-CDS-E-fasciculatus_F_contig13884:2182..2722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13884 2183..2722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13884.2852.1

>prot_E-fasciculatus_F_contig13884.2852.1 ID=prot_E-fasciculatus_F_contig13884.2852.1|Name=mRNA_E-fasciculatus_F_contig13884.2852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=428bp
NRAGKTSADEDVRRLIVVTADCQVVEETIKSIEAGIEDLHSLNQGIHAVY
KNNNGNTASSGSGGGRGSSSSSSSSGGGGGEIPGVDGSCAFLTPPLRTVD
AAGGFAPAAPGAHDGGHWSGSQRQVGVSGGRPWEGVLGYNDSGNSGRLER
GGSGGGWPVFEQCWAGESPPRHGGAEAAAPTKAEAGKVSVGTAPAARMTT
SRCQHQQQQQQQHHHHHHRSPPQGDVTTTAVDGDVLERQRLLGRGVTTNP
PQQRTPFRLRVPHGHHPHQQQQRQVQQQNRLQRQQHQQHEILRWQQQQQQ
QQQQQQQQQQQQQQQQPQQEHSRQHAALDGHRGPENSPRRSNNKREGAEA
TTGRLLPSSRSGGGGGGTDTRTAAIPPAAVRQSSGSPDWARGAERVGQTV
AEPGGSGNVAGARGHGRRGENTVEVKPP
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mRNA from alignment at E-fasciculatus_F_contig13884:29..2722+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13884.2852.1 ID=mRNA_E-fasciculatus_F_contig13884.2852.1|Name=mRNA_E-fasciculatus_F_contig13884.2852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2694bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13884:29..2722+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATCGAGCGGGCAAGACGTCAGCCGACGAAGATGTCCGGAGGCTGATCGT
CGTTACTGCGGACTGTCAGGTCGTCGAGGAGACAATCAAGTGCGTACTGC
TGTTTACATCTGCAGTCTTCATACTTCATGCATTTTGTGTCTCGCCGGTG
AGCAGCACTCTTCGCCTTGTTGCGTGGAAGTGCGTGTATCGCCGCCATCT
GGCTGCTACTCTTGTTTCAAAGTATAAGGCACGGCAAAAGCGTGCCTCGT
TGTTGTAAATCTAAACCTACCCTTTGAAGCTTCGCTGTCGTGCCGTGTCT
GTTGGTGCGGGGAGACAGACCCGTGTTTTCTATCGAGGGGCAAGTATTTG
CTCGTTCCGAGTGCGTTTCTTCTCGCCCAGTCCTACGACACCACCTACGA
TTTTTCGACGGCCCCTGAGTTTTGTGCGAAGTCACAGATTCAATCCTGGG
CCGGAGCCACAGAACATTTACTCCGCATTTTCAGCACGCAACACGCACGG
CGCTGACCTGGCAGGCTTGTCGTTCAGACGGGGAGGCGGGGGGCAGGGCG
GGAGACCGATTGCCTTCACTGATACGGTCCCTACCCGTTTGTGTCGATCG
TGCCCACGCACCACCAACACACGCCGTTACTATTATTTCTTCGTTTCTCA
GTCGTACAGTATACATCCGTCCCTTCGCTATCGTTTCTGCGGTGCCTCTA
CTACTACTGTACTTCGAAAACGGGGGGCAATAATTGATGGAACACCCGTC
TAACGCAGGAGCATCGAGGCGGGCATCGAAGACCTGCACAGCCTGAACCA
AGGGATCCACGCCGTGTACAAGAACAACAACGGCAACACCGCCAGCAGTG
GCAGCGGCGGCGGCAGGGGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGC
GGCGGCGGCGAGATCCCTGGGGTCGACGGTAGCTGCGCGTTTCTCACTCC
CCCCCTCCGAACCGTCGACGCCGCTGGCGGGTTTGCGCCCGCAGCCCCTG
GCGCCCACGATGGCGGCCACTGGAGCGGTTCTCAACGCCAAGTTGGCGTT
TCAGGGGGGCGGCCGTGGGAGGGAGTTCTGGGTTACAACGACAGCGGCAA
CAGTGGCCGCCTAGAGCGTGGCGGTAGCGGCGGCGGTTGGCCGGTGTTTG
AACAATGTTGGGCGGGAGAATCTCCTCCGCGCCACGGTGGAGCTGAAGCG
GCTGCTCCGACCAAGGCAGAGGCGGGGAAAGTATCAGTGGGAACGGCACC
GGCCGCGCGAATGACGACTTCGCGTTGCCAGCATCAGCAACAGCAACAGC
AGCAGCACCACCACCACCACCACCGCAGGTAAAAAAAAATCCGCTCGTTT
TGCTGCCCGCTCGTGTTTCGCGGACCCCTTTTGGCTTGGGGGTAGGGAGG
GAGGGTCTACTCCGCAGTGATTCATGATGATGTTGGTGCGGTCATGTGCA
CGACGACATGAGAGCAACCCCCCGTCCCGTCGCCACGGCGTCTCTGGGAG
GCCAGGCCGCGATGCAGGAGGCGTTTTCGCCTTGCGGCGACCACAATTTT
GTCGAAACGAAGCCAACCGCGACCCGGAACACGCTTCATTGACCCTTCTC
AACCCCCCCCCCCCGTCTATTCATGAACAACCACCACACCTCCCCTGTTG
TGTGTGACCCCATTTCAGCCCCCCCCAGGGTGATGTCACTACAACTGCTG
TCGATGGCGATGTCTTGGAGCGCCAACGCCTGCTCGGTCGAGGAGTCACC
ACCGTGAGTGATTCCGTGAGGAGGGCGGGCCGTAGGGATCGGTGCACCAA
CAGCACAACAGCGTTCGTTGTGGAAGAAAAAACGGATCGGCCCGTGCGGC
ACAAGAGGGGGGTGTAGGTTAAGGAGGCGTTTGGGTGGCCGCTGGTAGAC
GGTGGGAGACAATGCATCGTGGTCCGTGCCTTGTGTTTCTGTCGCTGTTG
CTTGAGTTGCTGTTTTACTTTCTCGCTGTGAATAACGTCTTGGTTTTTAT
CATTCGCAGCCTGTGTCTTATTGTTTTAAACCCACGCCGCTCGTCCCGGT
GCCCCTCTTGTGCACGTGTGCCCCTCCAACACACACACACGTTCTCGGCC
GCCCACGTCATCACCATCATCACCGTCCTGCTGTACTGCTGTATTTGGGA
ACAGAACCCCCCTCAACAGCGCACTCCGTTCAGGCTCCGAGTGCCACATG
GCCACCATCCTCATCAGCAGCAGCAGCGGCAGGTGCAACAGCAGAATAGG
CTGCAGCGACAGCAACACCAGCAACACGAGATACTCCGGTGGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGC
AGCAGCAGCCCCAACAGGAGCATAGCCGGCAGCACGCCGCCCTTGATGGG
CACCGCGGCCCTGAAAATTCTCCGCGGAGGTCGAACAACAAGCGGGAGGG
GGCGGAGGCAACAACGGGACGCCTTCTTCCCAGCAGCAGGAGTGGCGGCG
GCGGCGGCGGCACCGACACACGCACCGCGGCGATCCCGCCTGCCGCCGTC
AGACAAAGCAGCGGCTCTCCTGATTGGGCCCGCGGCGCAGAAAGGGTCGG
TCAAACCGTGGCGGAACCGGGCGGAAGCGGCAATGTGGCCGGCGCGCGGG
GGCACGGGCGGCGGGGAGAGAATACGGTGGAGGTGAAGCCGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13884:29..2722+

>mRNA_E-fasciculatus_F_contig13884.2852.1 ID=mRNA_E-fasciculatus_F_contig13884.2852.1|Name=mRNA_E-fasciculatus_F_contig13884.2852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2568bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13884:29..2722+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATCGAGCGGGCAAGACGTCAGCCGACGAAGATGTCCGGAGGCTGATCGT
CGTTACTGCGGACTGTCAGGTCGTCGAGGAGACAATCAAAATCGAGCGGG
CAAGACGTCAGCCGACGAAGATGTCCGGAGGCTGATCGTCGTTACTGCGG
ACTGTCAGGTCGTCGAGGAGACAATCAAGAGCATCGAGGCGGGCATCGAA
GACCTGCACAGCCTGAACCAAGGGATCCACGCCGTGTACAAGAACAACAA
CGGCAACACCGCCAGCAGTGGCAGCGGCGGCGGCAGGGGCAGCAGCAGCA
GCAGCAGCAGCAGCGGCGGCGGCGGCGGCGAGATCCCTGGGGTCGACGGT
AGCTGCGCGTTTCTCACTCCCCCCCTCCGAACCGTCGACGCCGCTGGCGG
GTTTGCGCCCGCAGCCCCTGGCGCCCACGATGGCGGCCACTGGAGCGGTT
CTCAACGCCAAGTTGGCGTTTCAGGGGGGCGGCCGTGGGAGGGAGTTCTG
GGTTACAACGACAGCGGCAACAGTGGCCGCCTAGAGCGTGGCGGTAGCGG
CGGCGGTTGGCCGGTGTTTGAACAATGTTGGGCGGGAGAATCTCCTCCGC
GCCACGGTGGAGCTGAAGCGGCTGCTCCGACCAAGGCAGAGGCGGGGAAA
GTATCAGTGGGAACGGCACCGGCCGCGCGAATGACGACTTCGCGTTGCCA
GCATCAGCAACAGCAACAGCAGCAGCACCACCACCACCACCACCGCAGGA
GCATCGAGGCGGGCATCGAAGACCTGCACAGCCTGAACCAAGGGATCCAC
GCCGTGTACAAGAACAACAACGGCAACACCGCCAGCAGTGGCAGCGGCGG
CGGCAGGGGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCG
AGATCCCTGGGGTCGACGGTAGCTGCGCGTTTCTCACTCCCCCCCTCCGA
ACCGTCGACGCCGCTGGCGGGTTTGCGCCCGCAGCCCCTGGCGCCCACGA
TGGCGGCCACTGGAGCGGTTCTCAACGCCAAGTTGGCGTTTCAGGGGGGC
GGCCGTGGGAGGGAGTTCTGGGTTACAACGACAGCGGCAACAGTGGCCGC
CTAGAGCGTGGCGGTAGCGGCGGCGGTTGGCCGGTGTTTGAACAATGTTG
GGCGGGAGAATCTCCTCCGCGCCACGGTGGAGCTGAAGCGGCTGCTCCGA
CCAAGGCAGAGGCGGGGAAAGTATCAGTGGGAACGGCACCGGCCGCGCGA
ATGACGACTTCGCGTTGCCAGCATCAGCAACAGCAACAGCAGCAGCACCA
CCACCACCACCACCGCAGCCCCCCCCAGGGTGATGTCACTACAACTGCTG
TCGATGGCGATGTCTTGGAGCGCCAACGCCTGCTCGGTCGAGGAGTCACC
ACCCCCCCCCCAGGGTGATGTCACTACAACTGCTGTCGATGGCGATGTCT
TGGAGCGCCAACGCCTGCTCGGTCGAGGAGTCACCACCAACCCCCCTCAA
CAGCGCACTCCGTTCAGGCTCCGAGTGCCACATGGCCACCATCCTCATCA
GCAGCAGCAGCGGCAGGTGCAACAGCAGAATAGGCTGCAGCGACAGCAAC
ACCAGCAACACGAGATACTCCGGTGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCCCCAACA
GGAGCATAGCCGGCAGCACGCCGCCCTTGATGGGCACCGCGGCCCTGAAA
ATTCTCCGCGGAGGTCGAACAACAAGCGGGAGGGGGCGGAGGCAACAACG
GGACGCCTTCTTCCCAGCAGCAGGAGTGGCGGCGGCGGCGGCGGCACCGA
CACACGCACCGCGGCGATCCCGCCTGCCGCCGTCAGACAAAGCAGCGGCT
CTCCTGATTGGGCCCGCGGCGCAGAAAGGGTCGGTCAAACCGTGGCGGAA
CCGGGCGGAAGCGGCAATGTGGCCGGCGCGCGGGGGCACGGGCGGCGGGG
AGAGAATACGGTGGAGGTGAAGCCGCCGAACCCCCCTCAACAGCGCACTC
CGTTCAGGCTCCGAGTGCCACATGGCCACCATCCTCATCAGCAGCAGCAG
CGGCAGGTGCAACAGCAGAATAGGCTGCAGCGACAGCAACACCAGCAACA
CGAGATACTCCGGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AACAACAACAGCAGCAGCAGCAGCAGCAGCAGCCCCAACAGGAGCATAGC
CGGCAGCACGCCGCCCTTGATGGGCACCGCGGCCCTGAAAATTCTCCGCG
GAGGTCGAACAACAAGCGGGAGGGGGCGGAGGCAACAACGGGACGCCTTC
TTCCCAGCAGCAGGAGTGGCGGCGGCGGCGGCGGCACCGACACACGCACC
GCGGCGATCCCGCCTGCCGCCGTCAGACAAAGCAGCGGCTCTCCTGATTG
GGCCCGCGGCGCAGAAAGGGTCGGTCAAACCGTGGCGGAACCGGGCGGAA
GCGGCAATGTGGCCGGCGCGCGGGGGCACGGGCGGCGGGGAGAGAATACG
GTGGAGGTGAAGCCGCCG
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