mRNA_E-fasciculatus_F_contig13882.2851.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13882.2851.1
Unique NamemRNA_E-fasciculatus_F_contig13882.2851.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13882.2851.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 824 bits (2129), Expect = 7.470e-273
Identity = 584/708 (82.49%), Postives = 602/708 (85.03%), Query Frame = 1
Query:   58 LRGDGGGSGFGGEDFALGKSLEHDHGFFNHKEDALYRKVQARSSKSSK-KGLGRGXXXXXXXXXXXXXXXXXXXXXXXXRKSTGSSLLKISDSISSSGSVGXXXXXXXXXXXXXXNKINRSASASGGRKDPLKAGLDFSTLAGAAKKINRSQSLLLVAKQP-SQADTASARKSTAKLRSQEVKKAMKDKEDRCDVEKTAEVGLWQTSAGEWRTLAREKSDESWDARPGFYDGGDGG-HGSSSQAHPSRLLHEEDGIQNRIKKLASCHWSRANRPLDSMVRKAQTSLAKALRKGAKRVLLPGLELRYPQNVAALLDDAAQAWEHGLLRPRRAGNNSNVMASEAKTPLAWTKSWSPIQVMDLSGNHLEGIDSLLMVETLPGVAAAGVVSDDGEESAGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVESKHRDDGDDDDMVAEEVHVEVPNLVKVIFIGHQDAGKSEVVKGLLSTKPHTNNNKDSSIVSTPANGTPSLLSATSTPLQQQPRRLGA-----PXXXXXXXXXXXXXDGEGWQVVGTGRHRSVPASNPPPNRPQHGRSETPPYGVGTPASGRVRGLGTTKTATGRSGG 2157
            LRGDGG +GFGGED ALGKSLEHDHGFFNHKEDALYRKV+ARS+KSSK KGLGRG        XXXXXXXXXX      RKS GSSLLKI DS+S+S SVG     XXXX     NKINRSASASGG+KDPLKAGLDF  LAG+A+KINRSQSLLLV KQP SQ + AS RK+  KLRSQEV+KAMKDKEDRC+VEKTA VGLWQTS GEW TLA EKSDESWDAR    +GGDGG H SS QA P+RLL EE+GI  RIKKLA       NRPLDSMVRKAQTSLAKALRKG KRVLLPGLELRYPQNVAALLDDAAQAWEHGLL PRR GNNS+V AS AKTPLAWTKSWSPIQVMDLSGN LEGIDSLLMVETLPGV  A  VS DGE   GNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVESKHRDD  DDDMVAEEVHVEVPNLVKVIFIGH DAGKSEVVKGLLSTKPHTNN  D SIVSTP   TPSL SATSTPLQQ PRRLGA     P       XXXXXX  EGWQVVGTGR RS+PASNPPPNRPQHGRSE PP+GVGTPASGRVRG GT KT T RSGG
Sbjct:  227 LRGDGGRNGFGGEDLALGKSLEHDHGFFNHKEDALYRKVEARSTKSSKNKGLGRGGSSGSLAGXXXXXXXXXXSWGRNGRKSGGSSLLKIGDSVSTSSSVGGGCDGXXXXKGSG-NKINRSASASGGKKDPLKAGLDFDALAGSARKINRSQSLLLVPKQPPSQTNMASVRKNRTKLRSQEVRKAMKDKEDRCNVEKTAAVGLWQTSGGEW-TLAPEKSDESWDARASLCNGGDGGGHSSSWQARPNRLLQEEEGILGRIKKLA-------NRPLDSMVRKAQTSLAKALRKGGKRVLLPGLELRYPQNVAALLDDAAQAWEHGLLHPRRGGNNSSV-ASGAKTPLAWTKSWSPIQVMDLSGNDLEGIDSLLMVETLPGVVGA-AVSKDGEGGGGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVESKHRDD--DDDMVAEEVHVEVPNLVKVIFIGHADAGKSEVVKGLLSTKPHTNN--DGSIVSTPTKSTPSL-SATSTPLQQ-PRRLGAAPRTPPLPPLPLPXXXXXXXXEGWQVVGTGRQRSLPASNPPPNRPQHGRSEPPPHGVGTPASGRVRGSGT-KTTTARSGG 916          
BLAST of mRNA_E-fasciculatus_F_contig13882.2851.1 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE)

HSP 1 Score: 814 bits (2102), Expect = 1.070e-268
Identity = 605/746 (81.10%), Postives = 621/746 (83.24%), Query Frame = 1
Query:   58 LRGDGGGSGFGGEDFALGKSLEHDHGFFNHKEDALYRKVQARSSKSSK-KGLGRGXXXXXXXXXXXXXXXXXXXXXXXXRKSTGSSLLKISDSISSSGSVGXXXXXXXXXXXXXXNKINRSASASGGRKDPLKAGLDFSTLAGAAKKINRSQSLLLVAKQP-SQADTASARKSTAKLRSQEVKKAMKDKEDRCDVEKTAEVGLWQTSAGEWRTLAREKSDESWDARPGFYDGGDGG-HGSSSQAHPSRLLHEEDGIQNRIKKLASCHWSR--------------------------------------------ANRPLDSMVRKAQTSLAKALRKGAKRVLLPGLELRYPQNVAALLDDAAQAWEHGLLRPRRAGNNSNVMASEAKTPLAWTKSWSPIQVMDLSGNHLEGIDSLLMVETLPGVAAAGVVSDDGEESAGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVESKHRDDGDDDDMVAEEVHVEVPNLVKVIFIGHQDAGKSEVVKGLLSTKPHTNNNKDSSIVSTPANGTPSLLSATSTPLQQQPRRLGAPXXXXXXXXXXXXXDGEGWQVVGTGRHRSVPASNPPPNRPQHGRSETPPYGVGTPASGRVRGLGTTKTATGRSG 2154
            LRGDGGG+ FGGED ALGKSLEHDHGFFNHKEDALYRKV+ARS+KSSK KGLGRG       XXXXXXXXXXXXXXXX RKS GSSLLKISDS S+S SVG XXXXXXXXXXXXX KINRSASASGG+KD LKAGLDF  LAG+A+KINRSQSLLLV KQP SQA+ AS RKS  KLR QEVKKAMKDKEDRCDVEKTA VGLWQTS GEW TLA +KSDESWDAR    +GGDGG H SS QAHP+RLL  E+GI  RIKKLASC+WSR                                            ANRPLDSMVRKAQTSLAKALRKG K VLLPGLELRYPQNVAALLDDAAQAWEHGLL PRR GNN +V AS  KTPLAWTKSWSPIQVMDLSGN LEGIDSLLMVETLPGVA  GVVS DG   AGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVE KHRDD     MVAEEV VEVPNLVKVIFIGH DAGKSEVVKGLLSTKPHTNN  DSSIVSTPAN TPSL SATSTPLQQ PRRLGA     XXXXXXXXX  EGWQVVGTGR RS+PASNPPPNRPQHGRSE PP+GVGTPASGRVRG GT KTAT RSG
Sbjct:  182 LRGDGGGNCFGGEDLALGKSLEHDHGFFNHKEDALYRKVEARSTKSSKNKGLGRGGSSGSLAXXXXXXXXXXXXXXXXGRKSGGSSLLKISDSASTSSSVGGXXXXXXXXXXXXX-KINRSASASGGKKDTLKAGLDFDALAGSARKINRSQSLLLVPKQPLSQANMASERKSKTKLRRQEVKKAMKDKEDRCDVEKTAAVGLWQTSGGEW-TLAPDKSDESWDARASLANGGDGGGHSSSWQAHPNRLLQAEEGILGRIKKLASCYWSRVSLGVPRGFERFLSFATSVPRQQTVVAVAAYHPRIRTLRDTGSEANRPLDSMVRKAQTSLAKALRKGGKLVLLPGLELRYPQNVAALLDDAAQAWEHGLLHPRRGGNNISV-ASGVKTPLAWTKSWSPIQVMDLSGNDLEGIDSLLMVETLPGVAG-GVVSKDG--GAGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVEGKHRDDXXXXXMVAEEVQVEVPNLVKVIFIGHADAGKSEVVKGLLSTKPHTNN--DSSIVSTPANSTPSL-SATSTPLQQ-PRRLGAAPRTPXXXXXXXXXXXEGWQVVGTGRQRSLPASNPPPNRPQHGRSEPPPHGVGTPASGRVRGSGT-KTATARSG 916          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13882.2851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWK1_ECTSI7.470e-27382.49LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5J7I8_9PHAE1.070e-26881.10Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13882contigE-fasciculatus_F_contig13882:1..3502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score835.5
Seed ortholog evalue1.9e-239
Seed eggNOG ortholog2880.D7FWK1
Preferred namePKD1
KEGG koko:K04985,ko:K10348,ko:K10641
KEGG TC1.A.5.1.1
GOsGO:0000075,GO:0000076,GO:0000151,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0022402,GO:0031461,GO:0031462,GO:0031570,GO:0032991,GO:0033314,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1990234
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04040,ko04091,ko04121,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size2173
Cds size2172
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13882.2851.1prot_E-fasciculatus_F_contig13882.2851.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13882 1..3501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.6897593-CDS-E-fasciculatus_F_contig13882:0..4851622927880.6897593-CDS-E-fasciculatus_F_contig13882:0..485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13882 1..485 +
1695995735.5713015-CDS-E-fasciculatus_F_contig13882:0..4851695995735.5713015-CDS-E-fasciculatus_F_contig13882:0..485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13882 1..485 +
1622927880.7009726-CDS-E-fasciculatus_F_contig13882:970..13431622927880.7009726-CDS-E-fasciculatus_F_contig13882:970..1343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13882 971..1343 +
1695995735.5826604-CDS-E-fasciculatus_F_contig13882:970..13431695995735.5826604-CDS-E-fasciculatus_F_contig13882:970..1343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13882 971..1343 +
1622927880.7140024-CDS-E-fasciculatus_F_contig13882:1720..18241622927880.7140024-CDS-E-fasciculatus_F_contig13882:1720..1824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13882 1721..1824 +
1695995735.5913293-CDS-E-fasciculatus_F_contig13882:1720..18241695995735.5913293-CDS-E-fasciculatus_F_contig13882:1720..1824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13882 1721..1824 +
1622927880.7251072-CDS-E-fasciculatus_F_contig13882:2291..35011622927880.7251072-CDS-E-fasciculatus_F_contig13882:2291..3501Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13882 2292..3501 +
1695995735.6026416-CDS-E-fasciculatus_F_contig13882:2291..35011695995735.6026416-CDS-E-fasciculatus_F_contig13882:2291..3501Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13882 2292..3501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13882.2851.1

>prot_E-fasciculatus_F_contig13882.2851.1 ID=prot_E-fasciculatus_F_contig13882.2851.1|Name=mRNA_E-fasciculatus_F_contig13882.2851.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=724bp
GGGSSSSVGDGGGATTTEELRGDGGGSGFGGEDFALGKSLEHDHGFFNHK
EDALYRKVQARSSKSSKKGLGRGGSSGSLAGRDGGTGGGAGSGGRNGRKS
TGSSLLKISDSISSSGSVGGGGDGGGGGKKGGGNKINRSASASGGRKDPL
KAGLDFSTLAGAAKKINRSQSLLLVAKQPSQADTASARKSTAKLRSQEVK
KAMKDKEDRCDVEKTAEVGLWQTSAGEWRTLAREKSDESWDARPGFYDGG
DGGHGSSSQAHPSRLLHEEDGIQNRIKKLASCHWSRANRPLDSMVRKAQT
SLAKALRKGAKRVLLPGLELRYPQNVAALLDDAAQAWEHGLLRPRRAGNN
SNVMASEAKTPLAWTKSWSPIQVMDLSGNHLEGIDSLLMVETLPGVAAAG
VVSDDGEESAGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALV
LPSLEKLELSGNWIEEIRAPRAPLPSLKHLDLGYNSLLELPAEVCLAMPS
LEVLLLPNNLLEWLPREVVGLRRLKRLDVGRNPLTSPPVEVAARGLDSVK
RYFRDVESKHRDDGDDDDMVAEEVHVEVPNLVKVIFIGHQDAGKSEVVKG
LLSTKPHTNNNKDSSIVSTPANGTPSLLSATSTPLQQQPRRLGAPPRTPP
PPTPPPPDDGEGWQVVGTGRHRSVPASNPPPNRPQHGRSETPPYGVGTPA
SGRVRGLGTTKTATGRSGGGGGAV
back to top

mRNA from alignment at E-fasciculatus_F_contig13882:1..3502+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13882.2851.1 ID=mRNA_E-fasciculatus_F_contig13882.2851.1|Name=mRNA_E-fasciculatus_F_contig13882.2851.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3502bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13882:1..3502+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGGGGCAGCAGCAGCAGCGTGGGCGATGGCGGCGGGGCGACCACAAC CGAGGAGCTGCGGGGGGACGGGGGCGGGAGCGGTTTCGGAGGTGAAGACT TTGCGCTGGGAAAGTCACTGGAGCACGATCACGGGTTTTTCAACCACAAA GAAGACGCCCTTTACCGGAAGGTCCAGGCGAGGAGCAGCAAGAGCTCGAA GAAGGGCCTGGGGAGGGGCGGCAGCAGCGGGAGCTTGGCGGGGAGGGACG GCGGGACCGGCGGCGGGGCGGGGTCAGGGGGGCGCAACGGAAGGAAGAGC ACCGGCAGCAGCTTGCTGAAGATTAGCGATAGCATCAGCAGTTCTGGCAG CGTGGGCGGGGGTGGTGACGGCGGGGGCGGTGGTAAGAAAGGGGGCGGCA ACAAGATTAACAGGTCTGCTTCGGCGAGCGGGGGAAGGAAGGACCCCCTG AAGGCGGGGCTTGACTTCAGCACTCTGGCAGGTGCGTGAGAAGATCGTCG ACCGAACCGCCGAGCTGTGTTCGTCGGTGTGCTGTGGTGCAGGCATCGAG AGGGGAAGGCTGTCGGTGTTCCCATAGATGGTTCGAGTGATGTCTCTCCG CCGCGTGTGTAAACGATTCGCCAGGTTGGAAATTTCTTGTTTGGGTAAAT GCTTGAGAAATGGCTTACCGCACCCGTGGGGTGTTGCTCTTGGTCTACAC GGAGAAGACACTTCATAGACGAAAACAATCCTGATCTCCGTGTGTGGCTG GCACATTTGATACAATTTATATACAAGTGGCGTTTCGAACGAAGGCCCCG CGACATGGACAAGCAGAGTATGTAACGCTTCCCATTCCTTGCCTACGGCG AGAAGCCATAATTTTGCATGAAAGCCGCGGACGCGTTGTTGTACTCTTGA GAAGACAAACACTTGTCCCCTCGTTCTCCTCTCCTTGCCCACGAACGGCC CGCGCTCGCCGCAAAGGGAGCGCGAAAAAAATCAACCGCAGCCAAAGCTT GCTCCTGGTGGCCAAGCAGCCGTCCCAGGCGGACACGGCCAGCGCGAGGA AGAGTACGGCCAAGCTCCGCAGCCAGGAGGTGAAGAAGGCCATGAAGGAC AAGGAGGACCGCTGCGACGTCGAGAAGACGGCTGAAGTCGGGCTGTGGCA AACCAGCGCGGGGGAGTGGAGGACTCTCGCTCGGGAGAAGTCCGACGAAA GCTGGGACGCGAGACCTGGTTTTTACGACGGGGGCGACGGTGGTCACGGC TCTTCGTCGCAAGCGCACCCGAGCCGGTTGCTGCACGAGGAGGATGGGAT ACAGAACCGCATCAAGAAACTGGCGAGTTGTCATTGGTCGAGAGTTTTCT GAGGGAGTGTTTATTGGTCGAGAGTTTTCTTAGGGGTGCCCAAGAGGGCT CTCGTTCGCGGTGAAGGTGCCTAGGCAGCAGATAGTAGTAGTTGCCGTGG CAGCCTATCACCCGAGAATTCGAACCGTTCGCGACACGGGCTCAGCGGTT GAGGAAGAATAGGCCGCACTGCTGCGTGAGGAGGCTAGGCGCGTGCTTGG TCGTCAGCGGCCGCAAACGGGAAGCTTGATGCCATCTCGTCTCGTCGGGG GTTGTCACGAGAAGCGCCTTCTCGTCACCGCTGCGTTGTTGTGGCCTTCG CCGTCTTCTTCCGTGTGTAACATGTGTTTGGCGCTCTTGTTTGTTTTGTG CTTGCGATGGATCGGTGCAGGCCAACCGCCCCTTGGACAGCATGGTTCGG AAGGCGCAGACGTCGTTGGCTAAGGCCCTTCGTAAGGGGGCAAAGCGGGT GCTGCTGCCGGGTCTGGAACTGAGGTGCGGTGAATGTACCTCCTTGTGGC TGTACCTTCTTTTGGTTGGCTCTGTTTTTGGTACAGTAATTGCGAGCAAG GTTTATGGGCGTCAGCGGTAAACCATGGCAGTGGTACCAATCAATCCACC AAGCACGACCACACACGACTCCAAGTTTATTTTGTAACCACGGTACCTCA ACCAGGCAACGGTAGAGGTACTGAGCACTACAGCTATCAGTAGTAGTGAG TGTACCACAATGACGCAGGACGAAAGGGCCGGTTCCTAACTAAGCCACGA AGTCAGCGCCACAACGACGCAGGACGAACAGGTCGGTTCCTGTCTAAGCC ACGCAGTCAGCGCCACAATGACGCGGGACAAAGAGTGGGTTCCTATCTAC ACAACGGTAACGAGACGACACGTCGGTGACGCAATCTGCGCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCGCAGGTACCCCCA GAACGTCGCGGCTCTGCTGGACGATGCGGCGCAGGCCTGGGAGCACGGCC TGCTGCGTCCTCGGCGTGCGGGCAACAACAGCAACGTCATGGCGTCGGAG GCGAAGACGCCCCTGGCGTGGACCAAGTCCTGGTCCCCGATCCAGGTGAT GGATCTAAGCGGGAACCACCTGGAAGGGATCGATTCCCTCCTCATGGTCG AGACGCTCCCCGGCGTGGCGGCGGCGGGTGTTGTTTCGGATGATGGCGAA GAGAGTGCTGGGAATCAGTCGGAGGCGGGGGGTCGGCGGACGGCACCGGT GTACCCCCTCGCGGGACTCCGCGAGCTCAGGCTGAACGGAAACATGCTGC ACGGGTTGCCGGGCAACATGGCCCTCGTGCTCCCCTCCCTGGAGAAGCTC GAGCTCTCCGGGAACTGGATCGAGGAGATCAGGGCGCCGCGGGCGCCGCT GCCCTCGCTGAAGCACCTCGACCTCGGGTACAACAGCCTCCTCGAGCTCC CGGCGGAGGTCTGCCTGGCGATGCCCTCCCTGGAGGTGCTGCTCCTGCCC AACAACCTGCTGGAGTGGCTCCCCCGGGAGGTGGTGGGGCTGCGGCGCCT CAAGCGGCTGGACGTGGGGAGGAACCCGCTGACGTCGCCCCCTGTGGAGG TGGCGGCGAGGGGGCTGGACAGCGTGAAGCGGTACTTCCGGGACGTGGAG AGCAAGCACAGAGACGACGGCGACGACGACGACATGGTCGCGGAGGAGGT GCACGTGGAGGTGCCCAACCTCGTAAAGGTGATCTTCATCGGGCACCAGG ACGCCGGCAAGTCGGAGGTCGTCAAGGGGCTGCTGTCCACCAAGCCCCAC ACCAACAACAACAAGGACAGCAGCATTGTTTCAACCCCGGCCAATGGCAC GCCGTCGTTGTTGTCGGCCACCAGCACGCCCCTGCAACAGCAGCCCCGAC GACTCGGTGCCCCCCCTAGGACACCCCCGCCGCCAACGCCGCCGCCGCCC GACGATGGCGAGGGCTGGCAGGTGGTAGGCACGGGTCGGCATCGTTCCGT CCCGGCGTCAAACCCGCCGCCGAACCGGCCCCAGCATGGACGTTCCGAAA CGCCGCCGTATGGCGTTGGAACTCCGGCCTCTGGCCGGGTGAGGGGGTTG GGGACGACGAAAACAGCGACCGGTCGGAGCGGGGGGGGCGGCGGAGCGGT CG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13882:1..3502+

>mRNA_E-fasciculatus_F_contig13882.2851.1 ID=mRNA_E-fasciculatus_F_contig13882.2851.1|Name=mRNA_E-fasciculatus_F_contig13882.2851.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4344bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13882:1..3502+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGGGGCAGCAGCAGCAGCGTGGGCGATGGCGGCGGGGCGACCACAAC
CGAGGAGCTGCGGGGGGACGGGGGCGGGAGCGGTTTCGGAGGTGAAGACT
TTGCGCTGGGAAAGTCACTGGAGCACGATCACGGGTTTTTCAACCACAAA
GAAGACGCCCTTTACCGGAAGGTCCAGGCGAGGAGCAGCAAGAGCTCGAA
GAAGGGCCTGGGGAGGGGCGGCAGCAGCGGGAGCTTGGCGGGGAGGGACG
GCGGGACCGGCGGCGGGGCGGGGTCAGGGGGGCGCAACGGAAGGAAGAGC
ACCGGCAGCAGCTTGCTGAAGATTAGCGATAGCATCAGCAGTTCTGGCAG
CGTGGGCGGGGGTGGTGACGGCGGGGGCGGTGGTAAGAAAGGGGGCGGCA
ACAAGATTAACAGGTCTGCTTCGGCGAGCGGGGGAAGGAAGGACCCCCTG
AAGGCGGGGCTTGACTTCAGCACTCTGGCAGGTGCGGAGGGGGCAGCAGC
AGCAGCGTGGGCGATGGCGGCGGGGCGACCACAACCGAGGAGCTGCGGGG
GGACGGGGGCGGGAGCGGTTTCGGAGGTGAAGACTTTGCGCTGGGAAAGT
CACTGGAGCACGATCACGGGTTTTTCAACCACAAAGAAGACGCCCTTTAC
CGGAAGGTCCAGGCGAGGAGCAGCAAGAGCTCGAAGAAGGGCCTGGGGAG
GGGCGGCAGCAGCGGGAGCTTGGCGGGGAGGGACGGCGGGACCGGCGGCG
GGGCGGGGTCAGGGGGGCGCAACGGAAGGAAGAGCACCGGCAGCAGCTTG
CTGAAGATTAGCGATAGCATCAGCAGTTCTGGCAGCGTGGGCGGGGGTGG
TGACGGCGGGGGCGGTGGTAAGAAAGGGGGCGGCAACAAGATTAACAGGT
CTGCTTCGGCGAGCGGGGGAAGGAAGGACCCCCTGAAGGCGGGGCTTGAC
TTCAGCACTCTGGCAGGTGCCGCGAAAAAAATCAACCGCAGCCAAAGCTT
GCTCCTGGTGGCCAAGCAGCCGTCCCAGGCGGACACGGCCAGCGCGAGGA
AGAGTACGGCCAAGCTCCGCAGCCAGGAGGTGAAGAAGGCCATGAAGGAC
AAGGAGGACCGCTGCGACGTCGAGAAGACGGCTGAAGTCGGGCTGTGGCA
AACCAGCGCGGGGGAGTGGAGGACTCTCGCTCGGGAGAAGTCCGACGAAA
GCTGGGACGCGAGACCTGGTTTTTACGACGGGGGCGACGGTGGTCACGGC
TCTTCGTCGCAAGCGCACCCGAGCCGGTTGCTGCACGAGGAGGATGGGAT
ACAGAACCGCATCAAGAAACTGGCGAGTTGTCATTGGTCGAGACGCGAAA
AAAATCAACCGCAGCCAAAGCTTGCTCCTGGTGGCCAAGCAGCCGTCCCA
GGCGGACACGGCCAGCGCGAGGAAGAGTACGGCCAAGCTCCGCAGCCAGG
AGGTGAAGAAGGCCATGAAGGACAAGGAGGACCGCTGCGACGTCGAGAAG
ACGGCTGAAGTCGGGCTGTGGCAAACCAGCGCGGGGGAGTGGAGGACTCT
CGCTCGGGAGAAGTCCGACGAAAGCTGGGACGCGAGACCTGGTTTTTACG
ACGGGGGCGACGGTGGTCACGGCTCTTCGTCGCAAGCGCACCCGAGCCGG
TTGCTGCACGAGGAGGATGGGATACAGAACCGCATCAAGAAACTGGCGAG
TTGTCATTGGTCGAGAGCCAACCGCCCCTTGGACAGCATGGTTCGGAAGG
CGCAGACGTCGTTGGCTAAGGCCCTTCGTAAGGGGGCAAAGCGGGTGCTG
CTGCCGGGTCTGGAACTGAGGCCAACCGCCCCTTGGACAGCATGGTTCGG
AAGGCGCAGACGTCGTTGGCTAAGGCCCTTCGTAAGGGGGCAAAGCGGGT
GCTGCTGCCGGGTCTGGAACTGAGGTACCCCCAGAACGTCGCGGCTCTGC
TGGACGATGCGGCGCAGGCCTGGGAGCACGGCCTGCTGCGTCCTCGGCGT
GCGGGCAACAACAGCAACGTCATGGCGTCGGAGGCGAAGACGCCCCTGGC
GTGGACCAAGTCCTGGTCCCCGATCCAGGTGATGGATCTAAGCGGGAACC
ACCTGGAAGGGATCGATTCCCTCCTCATGGTCGAGACGCTCCCCGGCGTG
GCGGCGGCGGGTGTTGTTTCGGATGATGGCGAAGAGAGTGCTGGGAATCA
GTCGGAGGCGGGGGGTCGGCGGACGGCACCGGTGTACCCCCTCGCGGGAC
TCCGCGAGCTCAGGCTGAACGGAAACATGCTGCACGGGTTGCCGGGCAAC
ATGGCCCTCGTGCTCCCCTCCCTGGAGAAGCTCGAGCTCTCCGGGAACTG
GATCGAGGAGATCAGGGCGCCGCGGGCGCCGCTGCCCTCGCTGAAGCACC
TCGACCTCGGGTACAACAGCCTCCTCGAGCTCCCGGCGGAGGTCTGCCTG
GCGATGCCCTCCCTGGAGGTGCTGCTCCTGCCCAACAACCTGCTGGAGTG
GCTCCCCCGGGAGGTGGTGGGGCTGCGGCGCCTCAAGCGGCTGGACGTGG
GGAGGAACCCGCTGACGTCGCCCCCTGTGGAGGTGGCGGCGAGGGGGCTG
GACAGCGTGAAGCGGTACTTCCGGGACGTGGAGAGCAAGCACAGAGACGA
CGGCGACGACGACGACATGGTCGCGGAGGAGGTGCACGTGGAGGTGCCCA
ACCTCGTAAAGGTGATCTTCATCGGGCACCAGGACGCCGGCAAGTCGGAG
GTCGTCAAGGGGCTGCTGTCCACCAAGCCCCACACCAACAACAACAAGGA
CAGCAGCATTGTTTCAACCCCGGCCAATGGCACGCCGTCGTTGTTGTCGG
CCACCAGCACGCCCCTGCAACAGCAGCCCCGACGACTCGGTGCCCCCCCT
AGGACACCCCCGCCGCCAACGCCGCCGCCGCCCGACGATGGCGAGGGCTG
GCAGGTGGTAGGCACGGGTCGGCATCGTTCCGTCCCGGCGTCAAACCCGC
CGCCGAACCGGCCCCAGCATGGACGTTCCGAAACGCCGCCGTATGGCGTT
GGAACTCCGGCCTCTGGCCGGGTGAGGGGGTTGGGGACGACGAAAACAGC
GACCGGTCGGAGCGGGGGGGGCGGCGGAGCGGTCGTACCCCCAGAACGTC
GCGGCTCTGCTGGACGATGCGGCGCAGGCCTGGGAGCACGGCCTGCTGCG
TCCTCGGCGTGCGGGCAACAACAGCAACGTCATGGCGTCGGAGGCGAAGA
CGCCCCTGGCGTGGACCAAGTCCTGGTCCCCGATCCAGGTGATGGATCTA
AGCGGGAACCACCTGGAAGGGATCGATTCCCTCCTCATGGTCGAGACGCT
CCCCGGCGTGGCGGCGGCGGGTGTTGTTTCGGATGATGGCGAAGAGAGTG
CTGGGAATCAGTCGGAGGCGGGGGGTCGGCGGACGGCACCGGTGTACCCC
CTCGCGGGACTCCGCGAGCTCAGGCTGAACGGAAACATGCTGCACGGGTT
GCCGGGCAACATGGCCCTCGTGCTCCCCTCCCTGGAGAAGCTCGAGCTCT
CCGGGAACTGGATCGAGGAGATCAGGGCGCCGCGGGCGCCGCTGCCCTCG
CTGAAGCACCTCGACCTCGGGTACAACAGCCTCCTCGAGCTCCCGGCGGA
GGTCTGCCTGGCGATGCCCTCCCTGGAGGTGCTGCTCCTGCCCAACAACC
TGCTGGAGTGGCTCCCCCGGGAGGTGGTGGGGCTGCGGCGCCTCAAGCGG
CTGGACGTGGGGAGGAACCCGCTGACGTCGCCCCCTGTGGAGGTGGCGGC
GAGGGGGCTGGACAGCGTGAAGCGGTACTTCCGGGACGTGGAGAGCAAGC
ACAGAGACGACGGCGACGACGACGACATGGTCGCGGAGGAGGTGCACGTG
GAGGTGCCCAACCTCGTAAAGGTGATCTTCATCGGGCACCAGGACGCCGG
CAAGTCGGAGGTCGTCAAGGGGCTGCTGTCCACCAAGCCCCACACCAACA
ACAACAAGGACAGCAGCATTGTTTCAACCCCGGCCAATGGCACGCCGTCG
TTGTTGTCGGCCACCAGCACGCCCCTGCAACAGCAGCCCCGACGACTCGG
TGCCCCCCCTAGGACACCCCCGCCGCCAACGCCGCCGCCGCCCGACGATG
GCGAGGGCTGGCAGGTGGTAGGCACGGGTCGGCATCGTTCCGTCCCGGCG
TCAAACCCGCCGCCGAACCGGCCCCAGCATGGACGTTCCGAAACGCCGCC
GTATGGCGTTGGAACTCCGGCCTCTGGCCGGGTGAGGGGGTTGGGGACGA
CGAAAACAGCGACCGGTCGGAGCGGGGGGGGCGGCGGAGCGGTC
back to top