prot_E-fasciculatus_F_contig1388.2849.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1388.2849.1
Unique Nameprot_E-fasciculatus_F_contig1388.2849.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length286
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1388.2849.1 vs. uniprot
Match: D8LII5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LII5_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 3.790e-101
Identity = 218/270 (80.74%), Postives = 234/270 (86.67%), Query Frame = 0 
Query:   16 GPIPDLRGLTALRSLDLSRNRFEGKAPSLSTLSGLRVFACQGPGYGKGRLSGRLNSLLNINTSGTTSLGTIMQLVRLDLSSHVLGGDLPLGLRALHLLEILIMCENNLKGLLPEWLGELGFLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGFAAALQSRGIRRFTFDGHRKRRGNTRRATIVETYRSPPTGSSSTKGERAYSGSLVQPLENNEEIDEHSVESKALTNERTTSGTSLATTSTDEERESPPTRRRDTELF 285
            GPIPDLRGLTALRSLDLS             LSGLRVFACQGPGYGKGRLSG L+S+LN  TSG+     ++QLVRLDLSSHVL GDLPLGLRALHLLEILI+CENNLKGLLP+WLGELGFLR+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGFAAALQSRGIRRF FDGHRKR G+ RRAT+VETYRSPPTGSS  KGE+ YSG LV+PLE++EE +EHSVES ALTNERT SGTSLAT  TDEERESP T RRDT+LF
Sbjct:  103 GPIPDLRGLTALRSLDLSXXXXXXXXXXXXXLSGLRVFACQGPGYGKGRLSGGLSSILNTKTSGS-----VLQLVRLDLSSHVLSGDLPLGLRALHLLEILIICENNLKGLLPKWLGELGFLRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGFAAALQSRGIRRFKFDGHRKRTGSARRATVVETYRSPPTGSSK-KGEKEYSGFLVRPLEDSEENNEHSVESNALTNERT-SGTSLAT-GTDEERESPQTSRRDTDLF 364
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1388.2849.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LII5_ECTSI3.790e-10180.74Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..57
e-value: 8.2E-10
score: 40.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 61..206
e-value: 1.8E-20
score: 75.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 113..171
e-value: 1.2E-7
score: 31.4
NoneNo IPR availablePANTHERPTHR46662:SF10coord: 2..52
coord: 75..184
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 2..52
coord: 75..184
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1388contigE-fasciculatus_F_contig1388:3562..5501 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1388.2849.1mRNA_E-fasciculatus_F_contig1388.2849.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1388 2415..5540 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1388.2849.1 ID=prot_E-fasciculatus_F_contig1388.2849.1|Name=mRNA_E-fasciculatus_F_contig1388.2849.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=286bp
MSKLAVLALQDNKLSGPIPDLRGLTALRSLDLSRNRFEGKAPSLSTLSGL
RVFACQGPGYGKGRLSGRLNSLLNINTSGTTSLGTIMQLVRLDLSSHVLG
GDLPLGLRALHLLEILIMCENNLKGLLPEWLGELGFLRHVDLSVNLLHGP
VPVSLAELPHLEALFLQDNALDGELPHGFAAALQSRGIRRFTFDGHRKRR
GNTRRATIVETYRSPPTGSSSTKGERAYSGSLVQPLENNEEIDEHSVESK
ALTNERTTSGTSLATTSTDEERESPPTRRRDTELF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf