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Homology
BLAST of mRNA_E-fasciculatus_F_contig1388.2849.1 vs. uniprot
Match: D8LII5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LII5_ECTSI) HSP 1 Score: 357 bits (915), Expect = 2.040e-117 Identity = 310/367 (84.47%), Postives = 329/367 (89.65%), Query Frame = 1
Query: 199 LNGTLDPLFALRNVEVIDLSSNVLSGSIAEAIGSLSTLKQLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLRGLTALRSLDLSRNRFEGKAPSLSTLSGLRVFACQGPGYGKGRLSGRLNSLLNINTSGTTSLGTIMQLVRLDLSSHVLGGDLPLGLRALHLLEILIMCENNLKGLLPEWLGELGFLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGFAAALQSRGIRRFTFDGHRKRRGNTRRATIVETYRSPPTGSSSTKGERAYSGSLVQPLENNEEIDEHSVESKALTNERTTSGTSLATTSTDEERESPPTRRRDTELF 1299
L+GTLDPLFALRN+E+IDLSSNVLSGSIAEAIGSLSTLKQLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IPDLRGLTALRSLDLS LSGLRVFACQGPGYGKGRLSG L+S+LN TSG+ ++QLVRLDLSSHVL GDLPLGLRALHLLEILI+CENNLKGLLP+WLGELGFLR+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGFAAALQSRGIRRF FDGHRKR G+ RRAT+VETYRSPPTGSS KGE+ YSG LV+PLE++EE +EHSVES ALTNERT SGTSLAT TDEERESP T RRDT+LF
Sbjct: 6 LSGTLDPLFALRNIEIIDLSSNVLSGSIAEAIGSLSTLKQLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPIPDLRGLTALRSLDLSXXXXXXXXXXXXXLSGLRVFACQGPGYGKGRLSGGLSSILNTKTSGS-----VLQLVRLDLSSHVLSGDLPLGLRALHLLEILIICENNLKGLLPKWLGELGFLRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGFAAALQSRGIRRFKFDGHRKRTGSARRATVVETYRSPPTGSSK-KGEKEYSGFLVRPLEDSEENNEHSVESNALTNERT-SGTSLAT-GTDEERESPQTSRRDTDLF 364
BLAST of mRNA_E-fasciculatus_F_contig1388.2849.1 vs. uniprot
Match: UPI001C532541 (phytosulfokine receptor 2 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C532541) HSP 1 Score: 68.9 bits (167), Expect = 1.080e-8 Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1
Query: 70 DGVLLEGGRVVGLLLGYNGFAGVLSPSCGLFSKLRVLDLSGNFLNGTL--DPLFALRNVEVIDLSSNVLSGSIAEAIGSLSTLKQL 321
DGV E GRV L+L G G +S S G KL+ LDLS NFL+G++ D + L+ ++V+D S N LSG I EA+G L +++ +
Sbjct: 66 DGVFCERGRVTKLILPKRGLTGTVSGSLGRLDKLKSLDLSFNFLHGSIPVDLSWNLQQLQVLDFSYNKLSGPIVEALGGLKSIRSV 151
BLAST of mRNA_E-fasciculatus_F_contig1388.2849.1 vs. uniprot
Match: UPI001E8C88BA (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E8C88BA) HSP 1 Score: 60.5 bits (145), Expect = 4.480e-6 Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 64 GRDGVLLEGGRVVGLLLGYNGFAGVLSPSCGLFSKLRVLDLSGNFLNGTLD-PLFALRNVEVIDLSSNVL 270
G D GRVV L L AG LS S G +LRVL+LS NFL G+L PLF LRN++V+DLSSN +
Sbjct: 479 GLDNSTETAGRVVKLELPKKKLAGALSESIGTVDQLRVLNLSLNFLQGSLPLPLFHLRNLQVLDLSSNTI 548
BLAST of mRNA_E-fasciculatus_F_contig1388.2849.1 vs. uniprot
Match: UPI001C34A7FB (phytosulfokine receptor 1-like n=3 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C34A7FB) HSP 1 Score: 58.9 bits (141), Expect = 1.320e-5 Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 70 DGVLLEGGRVVGLLLGYNGFAGVLSPSCGLFSKLRVLDLSGNFLNGTL-DPLFALRNVEVIDLSSNVLSGSIAEAIGSLST 309
D + G RVVGL LG G + S +LR L+LS NFL+G+L D LF L+N+E+ID+SSN G I + +LS+
Sbjct: 69 DSSTVSGRRVVGLELGSRKLKGKICESLADLDQLRFLNLSHNFLSGSLPDDLFRLQNLEIIDISSNDFVGPINGGMCALSS 149
BLAST of mRNA_E-fasciculatus_F_contig1388.2849.1 vs. uniprot
Match: A0A6P6GGW3_ZIZJJ (phytosulfokine receptor 1-like isoform X1 n=5 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6GGW3_ZIZJJ) HSP 1 Score: 57.0 bits (136), Expect = 5.430e-5 Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 64 GRDGVLLEGGRVVGLLLGYNGFAGVLSPSCGLFSKLRVLDLSGNFLNGTLDPL-FALRNVEVIDLSSNVLSGSIAEAI 294
G D GRVV L L AG LS S G +LRV++LS NFL G+L L F L+N++V+DLSSN SG + I
Sbjct: 76 GLDNSTETAGRVVKLELPKKKLAGKLSESIGTLDQLRVVNLSLNFLQGSLPLLLFHLQNLQVLDLSSNDFSGPVPNPI 153
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 316.6 |
| Seed ortholog evalue | 1.2e-83 |
| Seed eggNOG ortholog | 2880.D8LII5 |
| Preferred name | FLRT1 |
| KEGG ko | ko:K16362 |
| GOs | GO:0000902,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005102,GO:0005104,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0005911,GO:0006469,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0008150,GO:0008543,GO:0009653,GO:0009719,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016358,GO:0019207,GO:0019210,GO:0019220,GO:0019221,GO:0019222,GO:0019887,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030234,GO:0030674,GO:0031012,GO:0031175,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032809,GO:0032989,GO:0032990,GO:0033673,GO:0034097,GO:0036477,GO:0040007,GO:0042221,GO:0042325,GO:0042326,GO:0042995,GO:0043005,GO:0043025,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043549,GO:0044087,GO:0044089,GO:0044092,GO:0044297,GO:0044298,GO:0044306,GO:0044344,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0045859,GO:0045936,GO:0046425,GO:0046426,GO:0048468,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051716,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0060090,GO:0060255,GO:0060560,GO:0065007,GO:0065008,GO:0065009,GO:0070848,GO:0070851,GO:0070887,GO:0071310,GO:0071345,GO:0071363,GO:0071495,GO:0071774,GO:0071840,GO:0071944,GO:0080090,GO:0097458,GO:0097708,GO:0098772,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:1902531,GO:1902532,GO:1904892,GO:1904893,GO:1990138,GO:2000026 |
| EggNOG free text desc. | fibroblast growth factor receptor binding |
| EggNOG OGs | 2QWDS@2759,COG4886@1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04516 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-18_003510.1 |
| Exons | 8 |
| Model size | 1341 |
| Cds size | 858 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1388.2849.1 >prot_E-fasciculatus_F_contig1388.2849.1 ID=prot_E-fasciculatus_F_contig1388.2849.1|Name=mRNA_E-fasciculatus_F_contig1388.2849.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=286bp
MSKLAVLALQDNKLSGPIPDLRGLTALRSLDLSRNRFEGKAPSLSTLSGL
RVFACQGPGYGKGRLSGRLNSLLNINTSGTTSLGTIMQLVRLDLSSHVLG
GDLPLGLRALHLLEILIMCENNLKGLLPEWLGELGFLRHVDLSVNLLHGP
VPVSLAELPHLEALFLQDNALDGELPHGFAAALQSRGIRRFTFDGHRKRR
GNTRRATIVETYRSPPTGSSSTKGERAYSGSLVQPLENNEEIDEHSVESK
ALTNERTTSGTSLATTSTDEERESPPTRRRDTELF* back to topmRNA from alignment at E-fasciculatus_F_contig1388:2415..5540+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1388.2849.1 ID=mRNA_E-fasciculatus_F_contig1388.2849.1|Name=mRNA_E-fasciculatus_F_contig1388.2849.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3126bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1388:2415..5540+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAGACCGGAGAAAAGCAGGTGGTGACCCGAAACACCCGACGGACTACCG
CAACCGAGAGGACGGACGGGATGGCGTACTATTAGAAGGTGGACGAGTGA
GTACTTTGGAAAATGCTCTCTGCATGATAATTGTAGAGAAGCACGCGGAA
CGTTCATTCAACGGCTTTCAGGCAAAACGAACCACCACCAGAGTCCAATC
TCGCGTACAGCATGTATGTATGCAGGTATCTTCGAAAACGCGTTTTCTTT
CCGACACGACACCCTTGGGCAAGCAATCATTTCTGTCCAGAACCCAGGAT
AATTTCGGAACAGATTTAACGCATAGTCTGTAGAAACAGTAGCACCAGTT
ACCCCTTCGATGGTCATACCAGATTTAATCACACATCTGTTCGTTTTCTT
GTCAACGAAGGTGGTTGGACTGCTGCTCGGATACAACGGGTTTGCGGGCG
TCCTGTCACCTTCCTGTGGCCTGTTTTCAAAACTTCGGGTCCTGGACTTG
TCAGGAAACTTCTTGAACGGTAATCAACGCCAATGGCGTTGAAGAACTTG
TGCATCAGCTCAGCATGTATATCTGCACTGCTTTTAATACCGTATTTTGC
ATTATGACACCAATGCAGCTATATTGTATGAGTAGACCGTGACGCCTCAG
CCCGTCATGGCTTCCAACGTGAGCAATCCCAACTTTTTGTTTTGTAAAAT
AACCTCAAGTTTCATGAAACTGCGCCGTCAAACATTGCGCGATTGCACCA
GGAACGCTGGATCCACTTTTTGCCTTGAGGAACGTCGAGGTTATCGACCT
CTCGTCGAATGTCCTGTCCGGAAGCATTGCCGAAGCGATTGGATCACTCT
CAACGTTAAAGCAACTGTTCTTAAGCGAAAATCGACTAACAGGTAATTTT
GATGAAGATTAAGACCAAAACATATAGTTTGTTGTCATTCTCTTGTTTGT
GTGGATTTTTGTAGAACGCCATCCACTTACCCATTCATTGTGGAGCATTT
CTCTGTACTGCTGTAGCTTGAATCCCTTCTGCGTTGTCACAATGCGCAGG
TTCCATACCTGGTTCTCTCTCTTTGCTCGGAGAGCTAAGCGTGCTCTGCC
TCGACGGCAACGCGCTGTCGGGGGCATTACCGCCCGGAATTGGCTCCATG
TCAAAGCTTGCAGTTCTGGCTCTGCAGGACAACAAGCTCAGCGGTACGTA
CTAGCCGATGGTTGACCCTCTCCGTCCAGGTGGACATGTGGATCAACCAC
GCTGTATCCATCGTTCGTTCTGTATCACGTTCGCGTCGGGTCTGAGTCTA
TGTGTGCTGGATCTAACAGGCGACCTTTCGACACTCAAAACGCACAGGTC
CCATTCCTGATCTTCGCGGTCTTACCGCATTGCGTAGCTTGGACCTGTCG
CGCAACCGTTTCGAGGGGAAGGCGCCGTCGCTCTCTACTCTATCGGGGCT
GAGAGTGTTCGCTTGTCAGGGTCCGGGTTACGGGAAGGGGCGCCTGTCGG
GGAGACTCAATTCCTTACTCAACATCAACACCTCAGGCACGACAAGCTTG
GGTACGAGCACATTTTGTTTTGTTATAGACGCCGTTGTACCTTCCTCGTA
TAGTCTACACATGGTATCGTTCAAGACGTCGTCGTGAGAATTTTGAGCAC
CCTCACCTGCGGGGTGAAGTCGAGACCGCGACCGAGGCTTGTTCGGAGCA
AGCATGAGGTAGAATTGAAATAGCGAGGTAACGGAATAGCTCAGAAAAGA
GTGGCCCTTTGCGAACTGCCGGACTAATCGAGTGATGTTGTCAGGGTTGG
GACTCACTTTGTCGCGTTGGTGTATTCAGCGAGATAACCTATACCAGCGA
TCTTTGCAACAGGGGGGTACAAGGTACGTCATAGTATTTGGATCGAACGA
CCTGACTTAATGTACACATTCACATATTGCCAAGTGATTTCTCACACTGC
GACGTGGAAATCCTGTCATGACAACGTCGACAGGTACAATAATGCAGCTG
GTTCGGTTGGACCTTTCAAGTCACGTTTTGGGCGGAGACCTTCCGCTGGG
CCTCCGAGCACTACATCTGCTTGAGGCAAGAGCAATAATCAATATTCGTC
GTTCTATCAGTTGAGCTGGGCTGAGATCCGACAAAATCTATCTCTCCATC
GTTAAACTGCTGGCCGAGTTCGAACGTGTCTTTGTTTGGTCTCTGACATA
GGTTCCTCAAGAGTTTCGGTGAACAGTCCTAGGAGCTGCACGCAACGACG
TACGAGAAGAATGTGCTTGCAAATCGTGACGCTGGACATGTATTTTGTTG
TTCATCGCCATTTCACACCGCCATACCCATGTTTTTTCAACCGGGCAACA
GATCCTGATTATGTGTGAGAACAACCTGAAAGGTCTACTGCCAGAGTGGT
TGGGCGAGCTTGGTTTCTTGCGCCACGTCGACCTTTCGGTCAACTTGCTC
CACGGCCCAGTACCAGTGAGCCTGGCTGAACTACCTCATCTCGAGGCCCT
TTTTCTTCAGGACAACGCCCTTGACGGTGCGTTATGTGCACCGTGTGAAC
ACGATGACGCTGATGCCCGAAGACTTAATTTGATTTCCTTAGTCACAGGA
GGAGCTTAAGCCAAGCTTGAGAATGCGCCGTGGTTGGACGAAGAACTCGG
ACGGACGAGAGGGAATTGCATGATGCGACTTTGGAGACATGTTGCCACAC
CCAACTAACGGTTAGGTTTGCGTTTTTCTGCTGGGTTCAATGCTAGGTGA
ACTTCCGCATGGATTTGCTGCCGCTCTTCAGTCCAGAGGGATCCGGAGGT
TTACATTTGACGGCCACAGGAAGAGGAGGGGGAACACCCGGCGGGCCACG
ATCGTGGAAACGTACAGGTCACCTCCAACGGGAAGTAGTAGTACAAAGGG
GGAGAGGGCATACTCCGGATCCCTCGTGCAGCCACTGGAGAACAACGAGG
AGATCGATGAGCACAGTGTGGAAAGCAAGGCGCTCACCAACGAACGAACG
ACGAGCGGAACAAGCTTGGCAACTACATCTACGGATGAGGAGCGAGAGTC
TCCCCCAACGAGGCGTCGTGACACCGAGCTCTTTTAAGAATACGTATTGT
GGGCTGTCGTGTATGTATTGTGGATG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1388:2415..5540+ >mRNA_E-fasciculatus_F_contig1388.2849.1 ID=mRNA_E-fasciculatus_F_contig1388.2849.1|Name=mRNA_E-fasciculatus_F_contig1388.2849.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1716bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1388:2415..5540+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAAAGCTTGCAGTTCTGGCTCTGCAGGACAACAAGCTCAGCGATGT
CAAAGCTTGCAGTTCTGGCTCTGCAGGACAACAAGCTCAGCGGTCCCATT
CCTGATCTTCGCGGTCTTACCGCATTGCGTAGCTTGGACCTGTCGCGCAA
CCGTTTCGAGGGGAAGGCGCCGTCGCTCTCTACTCTATCGGGGCTGAGAG
TGTTCGCTTGTCAGGGTCCGGGTTACGGGAAGGGGCGCCTGTCGGGGAGA
CTCAATTCCTTACTCAACATCAACACCTCAGGCACGACAAGCTTGGGTCC
CATTCCTGATCTTCGCGGTCTTACCGCATTGCGTAGCTTGGACCTGTCGC
GCAACCGTTTCGAGGGGAAGGCGCCGTCGCTCTCTACTCTATCGGGGCTG
AGAGTGTTCGCTTGTCAGGGTCCGGGTTACGGGAAGGGGCGCCTGTCGGG
GAGACTCAATTCCTTACTCAACATCAACACCTCAGGCACGACAAGCTTGG
GTACAATAATGCAGCTGGTTCGGTTGGACCTTTCAAGTCACGTTTTGGGC
GGAGACCTTCCGCTGGGCCTCCGAGCACTACATCTGCTTGAGGTACAATA
ATGCAGCTGGTTCGGTTGGACCTTTCAAGTCACGTTTTGGGCGGAGACCT
TCCGCTGGGCCTCCGAGCACTACATCTGCTTGAGATCCTGATTATGTGTG
AGAACAACCTGAAAGGTCTACTGCCAGAGTGGTTGGGCGAGCTTGGTTTC
TTGCGCCACGTCGACCTTTCGGTCAACTTGCTCCACGGCCCAGTACCAGT
GAGCCTGGCTGAACTACCTCATCTCGAGGCCCTTTTTCTTCAGGACAACG
CCCTTGACGATCCTGATTATGTGTGAGAACAACCTGAAAGGTCTACTGCC
AGAGTGGTTGGGCGAGCTTGGTTTCTTGCGCCACGTCGACCTTTCGGTCA
ACTTGCTCCACGGCCCAGTACCAGTGAGCCTGGCTGAACTACCTCATCTC
GAGGCCCTTTTTCTTCAGGACAACGCCCTTGACGGTGAACTTCCGCATGG
ATTTGCTGCCGCTCTTCAGTCCAGAGGGATCCGGAGGTTTACATTTGACG
GCCACAGGAAGAGGAGGGGGAACACCCGGCGGGCCACGATCGTGGAAACG
TACAGGTCACCTCCAACGGGAAGTAGTAGTACAAAGGGGGAGAGGGCATA
CTCCGGATCCCTCGTGCAGCCACTGGAGAACAACGAGGAGATCGATGAGC
ACAGTGTGGAAAGCAAGGCGCTCACCAACGAACGAACGACGAGCGGAACA
AGCTTGGCAACTACATCTACGGATGAGGAGCGAGAGTCTCCCCCAACGAG
GCGTCGTGACACCGAGCTCTTTTAAGTGAACTTCCGCATGGATTTGCTGC
CGCTCTTCAGTCCAGAGGGATCCGGAGGTTTACATTTGACGGCCACAGGA
AGAGGAGGGGGAACACCCGGCGGGCCACGATCGTGGAAACGTACAGGTCA
CCTCCAACGGGAAGTAGTAGTACAAAGGGGGAGAGGGCATACTCCGGATC
CCTCGTGCAGCCACTGGAGAACAACGAGGAGATCGATGAGCACAGTGTGG
AAAGCAAGGCGCTCACCAACGAACGAACGACGAGCGGAACAAGCTTGGCA
ACTACATCTACGGATGAGGAGCGAGAGTCTCCCCCAACGAGGCGTCGTGA
CACCGAGCTCTTTTAA back to top
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