mRNA_E-fasciculatus_F_contig1388.2848.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1388.2848.1
Unique NamemRNA_E-fasciculatus_F_contig1388.2848.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: D8LII4_ECTSI (ATP phosphoribosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LII4_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.740e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTRINTSS 171
            PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMD+LQGCGATDILLFA+HNTRINTSS
Sbjct:  248 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDELQGCGATDILLFAMHNTRINTSS 304
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: A0A835Z6A7_9STRA (ATP phosphoribosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.500e-16
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTRI 159
            PGKRSPTV+QL  EGW+AVQALI KK SS +MD L   GATDILLFAL N+R+
Sbjct:  247 PGKRSPTVTQLQEEGWYAVQALIEKKKSSDIMDQLSEVGATDILLFALQNSRM 299
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: A0A0G4KVX0_9PEZI (ATP phosphoribosyltransferase (Fragment) n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4KVX0_9PEZI)

HSP 1 Score: 67.0 bits (162), Expect = 5.670e-13
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTR 156
            PGKR+PTV+ LDTEGW AV  +++KK+ + VMD L   GA DIL+  +HN+R
Sbjct:   59 PGKRAPTVTTLDTEGWVAVSCMVVKKEIAVVMDKLTAAGAQDILVLDIHNSR 110
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: W7TX87_9STRA (ATP phosphoribosyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX87_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.090e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTRI 159
            PGKRSPTVS L+ +GW AVQAL+ +K+S+  MD L   GATDILLF + N+R+
Sbjct:  251 PGKRSPTVSTLEEDGWVAVQALVRRKESNVKMDQLHDAGATDILLFPISNSRM 303
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: A0A7D8V062_9TREE (ATP phosphoribosyltransferase n=1 Tax=Vanrija humicola TaxID=5417 RepID=A0A7D8V062_9TREE)

HSP 1 Score: 69.3 bits (168), Expect = 1.590e-12
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTRIN 162
            PG+R+PTVS LD EGW AV ++I KK  + VMD+L+  GA DIL+ AL+N R+N
Sbjct:  257 PGRRAPTVSSLDEEGWVAVSSMIEKKQMATVMDELETSGAQDILILALNNCRVN 310
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: Q7SDF1_NEUCR (ATP phosphoribosyltransferase n=5 Tax=Sordariaceae TaxID=5148 RepID=Q7SDF1_NEUCR)

HSP 1 Score: 69.3 bits (168), Expect = 1.830e-12
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTR 156
            PGKR+PT++ L+TEGW AV A++ KK  + VMDDL   GATDI++  +HNTR
Sbjct:  282 PGKRAPTITSLETEGWVAVSAMVEKKRIATVMDDLTTVGATDIIVLDIHNTR 333
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: A0A0C2ZIZ8_9AGAM (ATP phosphoribosyltransferase n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C2ZIZ8_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 2.080e-12
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTRI 159
            PG+R+PTVS LD EGW AV A++LKK+ +R+MDDL    A DIL+F L N R+
Sbjct:  250 PGRRAPTVSPLDQEGWVAVSAMVLKKNCARIMDDLVKIDAQDILIFNLDNCRV 302
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: A0A0G4LLL6_9PEZI (ATP phosphoribosyltransferase n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4LLL6_9PEZI)

HSP 1 Score: 67.0 bits (162), Expect = 4.820e-12
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTR 156
            PGKR+PTV+ LDTEGW AV  +++KK+ + VMD L   GA DIL+  +HN+R
Sbjct:  170 PGKRAPTVTTLDTEGWVAVSCMVVKKEIAVVMDKLTAAGAQDILVLDIHNSR 221
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: A0A433A260_9FUNG (ATP phosphoribosyltransferase (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433A260_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 8.140e-12
Identity = 29/55 (52.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDT-EGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTRIN 162
            PG+++PTVS LD+ +GW AV A++  KD +RVMD+L+G GATDI++F++ N R++
Sbjct:  242 PGRQAPTVSTLDSHDGWVAVSAMVESKDIARVMDELEGAGATDIIVFSMSNCRVS 296
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BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Match: A0A168B550_9HYPO (ATP phosphoribosyltransferase n=1 Tax=Moelleriella libera RCEF 2490 TaxID=1081109 RepID=A0A168B550_9HYPO)

HSP 1 Score: 67.4 bits (163), Expect = 8.190e-12
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHNTR 156
            PGKR+PT++ LD EGW AV A++ KK  + VMDDL   GA+DIL+  +HNTR
Sbjct:  263 PGKRAPTITSLDGEGWVAVSAMVEKKRIALVMDDLSRVGASDILVLDIHNTR 314
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1388.2848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LII4_ECTSI3.740e-3096.49ATP phosphoribosyltransferase n=2 Tax=Ectocarpus T... [more]
A0A835Z6A7_9STRA5.500e-1671.70ATP phosphoribosyltransferase n=1 Tax=Tribonema mi... [more]
A0A0G4KVX0_9PEZI5.670e-1355.77ATP phosphoribosyltransferase (Fragment) n=1 Tax=V... [more]
W7TX87_9STRA1.090e-1260.38ATP phosphoribosyltransferase n=2 Tax=Monodopsidac... [more]
A0A7D8V062_9TREE1.590e-1257.41ATP phosphoribosyltransferase n=1 Tax=Vanrija humi... [more]
Q7SDF1_NEUCR1.830e-1257.69ATP phosphoribosyltransferase n=5 Tax=Sordariaceae... [more]
A0A0C2ZIZ8_9AGAM2.080e-1258.49ATP phosphoribosyltransferase n=1 Tax=Scleroderma ... [more]
A0A0G4LLL6_9PEZI4.820e-1255.77ATP phosphoribosyltransferase n=1 Tax=Verticillium... [more]
A0A433A260_9FUNG8.140e-1252.73ATP phosphoribosyltransferase (Fragment) n=1 Tax=J... [more]
A0A168B550_9HYPO8.190e-1257.69ATP phosphoribosyltransferase n=1 Tax=Moelleriella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1388contigE-fasciculatus_F_contig1388:4..177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue8e-24
Seed eggNOG ortholog2880.D8LII4
Preferred nameHIS1
KEGG rclassRC02819,RC03200
KEGG koko:K00765,ko:K08736
KEGG ReactionR01071
KEGG Pathwayko00340,ko01100,ko01110,ko01230,ko01524,ko03430,ko05200,ko05210,map00340,map01100,map01110,map01230,map01524,map03430,map05200,map05210
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.ATP phosphoribosyltransferase activity
EggNOG OGsCOG0040@1,KOG2831@2759
EC2.4.2.17
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionATP phosphoribosyltransferase
Ec32 orthologEc-18_003520.1
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.2695174-CDS-E-fasciculatus_F_contig1388:3..1771622927880.2695174-CDS-E-fasciculatus_F_contig1388:3..177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1388 4..177 +
1695995735.2375002-CDS-E-fasciculatus_F_contig1388:3..1771695995735.2375002-CDS-E-fasciculatus_F_contig1388:3..177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1388 4..177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1388.2848.1prot_E-fasciculatus_F_contig1388.2848.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1388 4..177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1388.2848.1

>prot_E-fasciculatus_F_contig1388.2848.1 ID=prot_E-fasciculatus_F_contig1388.2848.1|Name=mRNA_E-fasciculatus_F_contig1388.2848.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp
PGKRSPTVSQLDTEGWFAVQALILKKDSSRVMDDLQGCGATDILLFALHN
TRINTSS*
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mRNA from alignment at E-fasciculatus_F_contig1388:4..177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1388.2848.1 ID=mRNA_E-fasciculatus_F_contig1388.2848.1|Name=mRNA_E-fasciculatus_F_contig1388.2848.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=174bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1388:4..177+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGGCAAGCGATCGCCAACGGTTTCTCAGCTGGACACGGAGGGGTGGTT
CGCCGTCCAGGCCTTGATCCTCAAGAAGGACTCGAGCCGCGTCATGGACG
ACCTGCAGGGCTGCGGAGCAACAGACATCTTGCTCTTCGCGCTGCACAAC
ACTCGGATCAACACCTCGTCCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1388:4..177+

>mRNA_E-fasciculatus_F_contig1388.2848.1 ID=mRNA_E-fasciculatus_F_contig1388.2848.1|Name=mRNA_E-fasciculatus_F_contig1388.2848.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1388:4..177+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGGCAAGCGATCGCCAACGGTTTCTCAGCTGGACACGGAGGGGTGGTT
CGCCGTCCAGGCCTTGATCCTCAAGAAGGACTCGAGCCGCGTCATGGACG
ACCTGCAGGGCTGCGGAGCAACAGACATCTTGCTCTTCGCGCTGCACAAC
ACTCGGATCAACACCTCGTCCTGACCCGGCAAGCGATCGCCAACGGTTTC
TCAGCTGGACACGGAGGGGTGGTTCGCCGTCCAGGCCTTGATCCTCAAGA
AGGACTCGAGCCGCGTCATGGACGACCTGCAGGGCTGCGGAGCAACAGAC
ATCTTGCTCTTCGCGCTGCACAACACTCGGATCAACACCTCGTCCTGA
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