mRNA_E-fasciculatus_F_contig13876.2847.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13876.2847.1
Unique NamemRNA_E-fasciculatus_F_contig13876.2847.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.200e-17
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 2 
Query:    2 GPPVKRPRQGKERQDWSTSAWWLQLQNADLLAHTTDAAKAFRTSFRAPRIF 154
            GPPVKR RQ KER+DWSTSAWWLQLQNADLL HTT+AAK FRT FR P  F
Sbjct:   58 GPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAF 108
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BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5JBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-15
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  271 GSTDVTHAGWGMCPFDLGRSYTGKEGLPTIAYQVTVDPHGPGDRDHQGLH 420
            GSTDVTH GWGMCPF LGRSYTGKEG PTIAYQVTVD  G       G+H
Sbjct:   34 GSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGVH 83
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BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.240e-15
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 2 
Query:    2 GPPVKRPRQGKERQDWSTSAWWLQLQNADLLAHTTDAAKAFRTSFRAPRIF 154
            GPPVKR RQ KER+DWSTSAWWLQLQ+A LL H TDAAKAFRT FR P  F
Sbjct:   58 GPPVKRSRQVKERKDWSTSAWWLQLQDAALLDHATDAAKAFRTRFRVPHAF 108
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.870e-15
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:  271 GSTDVTHAGWGMCPFDLGRSYTGKEGLPTIAYQVTVD 381
            GSTDVTH GWGMCPF LGRSYTGKEG PTIAYQVTVD
Sbjct:   14 GSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVD 50
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BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.930e-15
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:    2 GPPVKRPRQGKERQDWSTSAWWLQLQNADLLAHTTDAAKAFRTSFRAPRIF 154
            GPPVKR RQ KER++WSTSAWWLQLQNADLL HTT+ AK F T FR P  F
Sbjct:  250 GPPVKRSRQVKERRNWSTSAWWLQLQNADLLDHTTEEAKVFHTRFRVPHAF 300
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BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.090e-15
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  271 GSTDVTHAGWGMCPFDLGRSYTGKEGLPTIAYQVTVDPHGPGDRDHQGLH 420
            GSTDVTH GWGMCPF LGRSYTGKEG PTIAYQVTVD  G       G+H
Sbjct:   76 GSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGVH 125
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.380e-14
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:  271 GSTDVTHAGWGMCPFDLGRSYTGKEGLPTIAYQVTVD 381
            GSTDVTH GWGMCPF LGRSYTGKEG PTIAYQVTVD
Sbjct:   76 GSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVD 112
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.040e-12
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:  271 GSTDVTHAGWGMCPFDLGRSYTGKEGLPTIAYQVTVDPHG 390
            GSTDVTH GW MCPF LGRS+TGKEG PTIAY VTVD  G
Sbjct:  109 GSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDG 148
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.240e-11
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:  271 GSTDVTHAGWGMCPFDLGRSYTGKEGLPTIAYQVTVD 381
            GSTDVTH GW MCPF LGR +TGKEG PTIAY+VTVD
Sbjct:   70 GSTDVTHIGWNMCPFTLGRPFTGKEGFPTIAYEVTVD 106
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Match: A0A6H5KEF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.230e-11
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:  271 GSTDVTHAGWGMCPFDLGRSYTGKEGLPTIAYQVTVD 381
            GSTDVTH  W MCPF LGRS+TGKEG PTIAY+VTVD
Sbjct:  137 GSTDVTHIDWNMCPFTLGRSFTGKEGFPTIAYEVTVD 173
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13876.2847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCU6_9PHAE4.200e-1780.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS8_9PHAE1.160e-1574.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9W9_9PHAE1.240e-1578.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG32_9PHAE2.870e-1591.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE4.930e-1574.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6N4_9PHAE7.090e-1574.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE4.380e-1491.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE8.040e-1280.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIW4_9PHAE1.240e-1181.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEF0_9PHAE2.230e-1181.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13876contigE-fasciculatus_F_contig13876:982..3412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size630
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13876.2847.1prot_E-fasciculatus_F_contig13876.2847.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13876 2487..2726 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.1233184-UTR-E-fasciculatus_F_contig13876:981..12301622927880.1233184-UTR-E-fasciculatus_F_contig13876:981..1230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13876 982..1230 +
1695995735.1866496-UTR-E-fasciculatus_F_contig13876:981..12301695995735.1866496-UTR-E-fasciculatus_F_contig13876:981..1230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13876 982..1230 +
1622927880.1401224-UTR-E-fasciculatus_F_contig13876:2432..24861622927880.1401224-UTR-E-fasciculatus_F_contig13876:2432..2486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13876 2433..2486 +
1695995735.196933-UTR-E-fasciculatus_F_contig13876:2432..24861695995735.196933-UTR-E-fasciculatus_F_contig13876:2432..2486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13876 2433..2486 +
1622927880.1850567-UTR-E-fasciculatus_F_contig13876:2726..27491622927880.1850567-UTR-E-fasciculatus_F_contig13876:2726..2749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13876 2727..2749 +
1695995735.2181654-UTR-E-fasciculatus_F_contig13876:2726..27491695995735.2181654-UTR-E-fasciculatus_F_contig13876:2726..2749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13876 2727..2749 +
1622927880.211348-UTR-E-fasciculatus_F_contig13876:3348..34121622927880.211348-UTR-E-fasciculatus_F_contig13876:3348..3412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13876 3349..3412 +
1695995735.226699-UTR-E-fasciculatus_F_contig13876:3348..34121695995735.226699-UTR-E-fasciculatus_F_contig13876:3348..3412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13876 3349..3412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.1617372-CDS-E-fasciculatus_F_contig13876:2486..27261622927880.1617372-CDS-E-fasciculatus_F_contig13876:2486..2726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13876 2487..2726 +
1695995735.2071593-CDS-E-fasciculatus_F_contig13876:2486..27261695995735.2071593-CDS-E-fasciculatus_F_contig13876:2486..2726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13876 2487..2726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13876.2847.1

>prot_E-fasciculatus_F_contig13876.2847.1 ID=prot_E-fasciculatus_F_contig13876.2847.1|Name=mRNA_E-fasciculatus_F_contig13876.2847.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=80bp
MCPFDLGRSYTGKEGLPTIAYQVTVDPHGPGDRDHQGLHGSNQRENHHPI
RQVSTPSRRVPRTSYGGRMERSASAWGAT*
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mRNA from alignment at E-fasciculatus_F_contig13876:982..3412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13876.2847.1 ID=mRNA_E-fasciculatus_F_contig13876.2847.1|Name=mRNA_E-fasciculatus_F_contig13876.2847.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2431bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13876:982..3412+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGTCCGCCCGTGAAGCGTCCGAGACAAGGGAAGGAGCGACAGGATTGGA
GTACCTCGGCGTGGTGGCTACAGCTCCAAAACGCAGACCTGTTGGCTCAC
ACGACAGACGCGGCGAAGGCCTTCCGCACTAGCTTCCGGGCACCACGCAT
TTTTTGTGGAACTGGTGGAGTTGGCGAGGGGGTTGGAGGTTGTTCTCTAG
GGGAGGACAGGAATCTGCCGGTCGTCAAGGGATACCAAATGAACCCAAGG
TGAGCACCTCTCTGTCAATCAACACACACGCACAGGATCTAGAACTGCTT
GTGTTCTACCGCTGCTGTAGCACCTGCACCTGTCGTGCTACAGCAATAGT
CAGGGGCTTTGGCGTACACAGCAGTTCAGCCATGCACGGACGGTGGCTCT
GATAGTACACAGCAGCGTACCCTCCGGTGCTCTGTTGTCAAGACCTGCTG
TGTAGTGTTCCGTAACAACACGTAGCAGTTGTTCAGCCGTCCAAGGTGGC
CCTGGTATGCATCATCCGCAGTTTGCTGCGTACTCCTTGCAGCGTCCTCC
CCGTAGTCTGTCCGTGTGCCAGATACCCACACCGCTCGCCGTGTGCAGGA
CACCCACACCGCTCCCAGTGTGCGCGTACAACACAGATACTGCTGTAGAT
CAGGTAGCGGTATTGCGAGCAAGTGCCGGTGCGTTTGAATCGTGTTGCAG
GTCGTTAACCTAGTGCACGCGTTACGGACTGGACGTATGTGAGTAACCAC
GCACGTAACAGCAAGGTGCGCACGAACGCCATGTACCAGCGGCAACGCGA
CAGCAGCAGCACCAGGGTATTTAGATGGTGCTATTCGGGTGCTTCGAGCA
AGCTGGCCATTGCTCTACGATAGATATGCATAATATACAAAGCAGCATTC
GTGGTTAATACCCCGTGTATATTCGGGTTTCACTGTGCACGCTGGCTTTC
AGATGGAACAGACGTTGGTCTGTCTGACTGGGCGCCCGCCAAGCGTCGAC
TATGTTTGTAGCGCTCCATGCCTCAAGTGTGCGATTATTTATTAGGTAGT
TCTCTTGGTAAACTGCAGTGATGCGTTGGATTGCACTGCCTTTTCATCTT
CATCTTCTGATATCGGAGTGTACAGGGCACTACTGTTGTGCAGTACATTT
TTCGATGGCGGAGGTGCCGACGCCACATGTAAGTCGCATCGTCGGCATAG
AGCTGCTGTAGACATACTGCATCCAACCAGAAAAGTCGCACGCGATCCAA
ACGCGCGGGCACGTACTCGCCATACCTGTTGCACTATTGCTGGTGACAGC
AACTACGTGTTTACACACGCCACTAACTTCATTCATGCATCGGCCAACGA
ACAGCTGACCCCGCTTAAATGGAACGCTTCGCTGACTCTACATCAACCAC
GACTCACGATACGCCCTATCCCCACACTCTCTCCCACACACCCACACACA
GTACGCAAATTTACACGTATCAGGATCCACCGACGTGACCCACGCCGGGT
GGGGCATGTGCCCGTTCGACCTGGGCCGTTCTTATACTGGCAAGGAGGGA
CTCCCGACCATCGCCTACCAAGTGACAGTCGATCCACACGGGCCGGGCGA
TCGCGACCACCAGGGGCTTCACGGGAGCAACCAGCGAGAAAACCATCATC
CGATACGACAGGTGTCCACACCATCAAGACGAGTGCCCCGTACAAGCTAC
GGAGGCCGGATGGAACGTTCCGCGAGCGCATGGGGTGCTACTTGATCGTT
GACAACGGGTACCACGAGGTAATTTCAATTTGTCATCCTAATAGAATAAG
AGAAGAACCCCCTCCGGCGGGAAACACTTGAGTAGGATTACTTCAACCGC
CCTCGTAGTCATACCCAGTTCAGTTTGTGGTCTATCGACCGCGAAGAGTG
TTGTCGACACCCAAATGTTCCCGGCACGAACCCAAAACTTAAACCCTAAT
TCCGCCTACGCCTGTTTGGTGCCGGACTACGGAGAAACTTGGATGGAAAA
ATAACAACTTGACATTTCACACGTCGATGGTGTTATATGAGGTTGGGCGC
GTGAGTAAGTCACGCTGCAGCTTTATTTGTCGACGTACGCTCAAGTAATG
TACGCACGTCCGTGCAAGAATCTGCGCGTTTGTTCGTTTGGACGCGTAGG
TGGCCACAAGCGGGTAGCTGTTCACAGGAAGAAACTAGACTCACTCAACC
CGCACCAGCAAGGTGGTTGTTTTAGACAATGGTGAACTAGCACCCGCTGC
CAAGTTTGGTATTGTTGTCAAACAACGTGCGGAACCCACTCGTCTAAGCC
CTGAAGTAGCCGCCTGCAATTTCGTTTTATACTCTGCTGCTGTTGTCCTG
TCAAAATGTGGGTGAAGGGCAAGGACGCCCTCTCGAGGACGCTTGAGAGC
GTGCGCAAGGATGTCGAGTGCTTATTCGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13876:982..3412+

>mRNA_E-fasciculatus_F_contig13876.2847.1 ID=mRNA_E-fasciculatus_F_contig13876.2847.1|Name=mRNA_E-fasciculatus_F_contig13876.2847.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13876:982..3412+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCCCGTTCGACCTGGGCCGTTCTTATACTGGCAAGGAGGGACTCCC
GACCATCGCCTACCAAGTGACAGTCGATCCACACGGGCCGGGCGATCGCG
ACCACCAGGGGCTTCACGGGAGCAACCAGCGAGAAAACCATCATCCGATA
CGACAGGTGTCCACACCATCAAGACGAGTGCCCCGTACAAGCTACGGAGG
CCGGATGGAACGTTCCGCGAGCGCATGGGGTGCTACTTGAATGTGCCCGT
TCGACCTGGGCCGTTCTTATACTGGCAAGGAGGGACTCCCGACCATCGCC
TACCAAGTGACAGTCGATCCACACGGGCCGGGCGATCGCGACCACCAGGG
GCTTCACGGGAGCAACCAGCGAGAAAACCATCATCCGATACGACAGGTGT
CCACACCATCAAGACGAGTGCCCCGTACAAGCTACGGAGGCCGGATGGAA
CGTTCCGCGAGCGCATGGGGTGCTACTTGA
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