mRNA_E-fasciculatus_F_contig13873.2845.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13873.2845.1
Unique NamemRNA_E-fasciculatus_F_contig13873.2845.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13873.2845.1 vs. uniprot
Match: D7FRZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.020e-12
Identity = 38/57 (66.67%), Postives = 38/57 (66.67%), Query Frame = 3 
Query:   78 MSARTFVSYCAGGEQLPTPT-------------LYLQVDSANQRAFGIPALIITSER 209
            MSARTF SYCAG  QLPT T             LYLQVDSANQRAF  PALIITSER
Sbjct:    1 MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSER 57
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13873.2845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRZ3_ECTSI1.020e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13873contigE-fasciculatus_F_contig13873:2923..3505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size192
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13873.2845.1prot_E-fasciculatus_F_contig13873.2845.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13873 2943..3505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.8795357-UTR-E-fasciculatus_F_contig13873:2922..29421622927879.8795357-UTR-E-fasciculatus_F_contig13873:2922..2942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13873 2923..2942 -
1695995735.1047764-UTR-E-fasciculatus_F_contig13873:2922..29421695995735.1047764-UTR-E-fasciculatus_F_contig13873:2922..2942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13873 2923..2942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.906864-CDS-E-fasciculatus_F_contig13873:2942..30231622927879.906864-CDS-E-fasciculatus_F_contig13873:2942..3023Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13873 2943..3023 -
1695995735.1142588-CDS-E-fasciculatus_F_contig13873:2942..30231695995735.1142588-CDS-E-fasciculatus_F_contig13873:2942..3023Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13873 2943..3023 -
1622927879.957794-CDS-E-fasciculatus_F_contig13873:3394..35051622927879.957794-CDS-E-fasciculatus_F_contig13873:3394..3505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13873 3395..3505 -
1695995735.1245818-CDS-E-fasciculatus_F_contig13873:3394..35051695995735.1245818-CDS-E-fasciculatus_F_contig13873:3394..3505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13873 3395..3505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13873.2845.1

>prot_E-fasciculatus_F_contig13873.2845.1 ID=prot_E-fasciculatus_F_contig13873.2845.1|Name=mRNA_E-fasciculatus_F_contig13873.2845.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
RAVLGTRESIGRGVPSSRERAGSFEQCRRAPLFHTVPGESNYPHRHCTCK
WTPRIREPLVSLH*
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mRNA from alignment at E-fasciculatus_F_contig13873:2923..3505-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13873.2845.1 ID=mRNA_E-fasciculatus_F_contig13873.2845.1|Name=mRNA_E-fasciculatus_F_contig13873.2845.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=583bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13873:2923..3505- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGCCGTGCTCGGCACCCGCGAGAGCATTGGACGGGGTGTACCCAGTAG
TCGTGAGCGAGCTGGGTCTTTCGAGCAATGTCGGCGCGCACCTTTGTTTC
ATACTGTGCCGGTGAGTGGAGAGAGAGAAAGTAAACAGCACGACATGGAA
GAGATGACTGACATACATGTGTGTACTGCTTACGAAGCAGTGCAGGAAAA
AAAAGTGCTTGTATATCCAGCAGTATGCAAATAGCCCGCTGCTGTTGTAG
CAGTTGTACAGCAGAGAGAGGCTGACCTTTGTGTAGGAGGGGAGGTACCC
AGGGTTGACATTAACGTGGATCGGGTGCTTGGGAAGCGAATTGCGATGTT
GTGGTGGCTCGTGCGTGTGCGCTGTGACCGTCCGTTCTGTTTTCGTTCGT
CACATGTCTTCCTCCTCGGTGTATCTTGATCCATGCCTCTGTGCTGCTCC
TCTTCTTCTCCGTTTGACCTCCGGGTGAACAGGGGGAGAGCAACTACCCA
CACCGACATTGTACCTGCAAGTGGACTCCGCGAATCAGAGAGCCTTTGGT
ATCCCTGCACTGATCATTACCTCGGAGAGGCAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13873:2923..3505-

>mRNA_E-fasciculatus_F_contig13873.2845.1 ID=mRNA_E-fasciculatus_F_contig13873.2845.1|Name=mRNA_E-fasciculatus_F_contig13873.2845.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13873:2923..3505- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGCCGTGCTCGGCACCCGCGAGAGCATTGGACGGGGTGTACCCAGTAG
TCGTGAGCGAGCTGGGTCTTTCGAGCAATGTCGGCGCGCACCTTTGTTTC
ATACTGTGCCGAGAGCCGTGCTCGGCACCCGCGAGAGCATTGGACGGGGT
GTACCCAGTAGTCGTGAGCGAGCTGGGTCTTTCGAGCAATGTCGGCGCGC
ACCTTTGTTTCATACTGTGCCGGGGGAGAGCAACTACCCACACCGACATT
GTACCTGCAAGTGGACTCCGCGAATCAGAGAGCCTTTGGTATCCCTGCAC
TGAGGGGAGAGCAACTACCCACACCGACATTGTACCTGCAAGTGGACTCC
GCGAATCAGAGAGCCTTTGGTATCCCTGCACTGA
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