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Homology
BLAST of mRNA_E-fasciculatus_F_contig13870.2844.1 vs. uniprot
Match: A0A6H5L5T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T5_9PHAE) HSP 1 Score: 495 bits (1274), Expect = 4.750e-161 Identity = 347/453 (76.60%), Postives = 359/453 (79.25%), Query Frame = 1
Query: 343 DLWSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTYLVKLSLGGKPTRVASDLLFSYTPSPEPAFRGRRRSTASRRRDTAEGGGAREVDPSNGWVPSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHAAVMTA-ARPGDRARVLYDDTDWYMATVVGLHRGSSVTVRFDDGSEARVTLSPGDAEICADDALAPTAASSSEXXXXXXXXXXXXXXXXXXXXXXRRRLGRGVVSKGVRTLGPGGRVLGEGEGKALTEERARALLDTAPQKLVGLVYQEHHRGYGGWWETVVTEVSEERMGGTGGSDKDGDGGGDAMWPELVVVGQMDRSGENIKVVGSAATASSAALSGEGXXXXDEPDFVYTRKTKSLLSRLRTWDKHREAEWEATALEADDEVAATA 1698
D WSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTY VKLSLGGKPTRV SDLLFSYTPSPEPAFRGRRRSTASRRRDTAEGG REVDPSNGWVPSSPS XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX ARPGDRARVLYD+TDWYMATVVG+HRGSSVTVRFDDGS+ARVTLSPGDAEICADDALAP A+ XXXXXXXXXXXXXXXXXXX R G GV KGVR LG GGRVLGEGEGKALTEERA+ALLDTAPQKLVGLVYQEHHRGYGGWWETVVTEVSEERMG +GG+ +D DGGG+AMWPE VVVGQMDRSGE +K +A XXXX EPDFVYTRKT+SLLSRLRTWDKHREAEWEATALEADDE AA A
Sbjct: 581 DSWSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTYFVKLSLGGKPTRVGSDLLFSYTPSPEPAFRGRRRSTASRRRDTAEGG-PREVDPSNGWVPSSPSSCSSSPSPKRTRSKDGSGRSVSXXXXXXXXXXXXXXXXXXXRRSLLRRGVKKNSGDGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPGDRARVLYDNTDWYMATVVGVHRGSSVTVRFDDGSKARVTLSPGDAEICADDALAPAASEPXXXXXXXXXXXXXXXXXXXXX-----RPGSGVAVKGVRALGAGGRVLGEGEGKALTEERAKALLDTAPQKLVGLVYQEHHRGYGGWWETVVTEVSEERMGDSGGAGRDKDGGGNAMWPESVVVGQMDRSGEKVKAKAGSAXXXXXXX---XXXXXXEPDFVYTRKTRSLLSRLRTWDKHREAEWEATALEADDEAAAAA 1024
BLAST of mRNA_E-fasciculatus_F_contig13870.2844.1 vs. uniprot
Match: D8LSY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY7_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 2.400e-153 Identity = 351/457 (76.81%), Postives = 368/457 (80.53%), Query Frame = 1
Query: 343 DLWSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTYLVKLSLGGKPTRVASDLLFSYTPSPEPAFRGRRRSTASRRRDTAEGGGAREVDPSNGWVPSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHA-------AVMT--AARPGDRARVLYDDTDWYMATVVGLHRGSSVTVRFDDGSEARVTLSPGDAEICADDALAPTAASSSEXXXXXXXXXXXXXXXXXXXXXXRRRLGRGVVSKGVRTLGPGGRVLGEGEGKALTEERARALLDTAPQKLVGLVYQEHHRGYGGWWETVVTEVSEERMGGTGGSDKDGDGGGDAMWPELVVVGQMDRSGENIKVVGSAATASSAALSGEGXXXXDEPDFVYTRKTKSLLSRLRTWDKHREAEWEATALEADDEV 1686
D WSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTY VKLSLGGKPTRV SDLLFSYTPSPEPAFRGRR+ TASRRRDT EGGG E DP NG VPSSPS XXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A MT AARPGDRARVLYD+TDWYMATVVG+HRGSSVTVRFDDGSEAR+ LSPGDAEICADDALAP A+ XXXXXXXXXXXXXXXX RRR GRGVV+KGVR LG GGR+LGEGEGKALTEERA+ALLDTAP+KLVGLVYQEHHRGYGGWWETVVTEVSEERMG +GG+ +D DG G+AMWPE VVVGQ+DRSGE +K A + XXXX EPDFVYTRKT+ LLSRLR WDKHREAEWEATALEADDEV
Sbjct: 545 DSWSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTYFVKLSLGGKPTRVGSDLLFSYTPSPEPAFRGRRKCTASRRRDTPEGGGGGERDPHNGGVPSSPSACSSPPSXXXXXKRTKSKNPRGPSVSSSGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAMTKAAARPGDRARVLYDNTDWYMATVVGVHRGSSVTVRFDDGSEARLALSPGDAEICADDALAPAASEPPAXXXXXXXXXXXXXXXX------RRRPGRGVVAKGVRALGAGGRILGEGEGKALTEERAKALLDTAPEKLVGLVYQEHHRGYGGWWETVVTEVSEERMGDSGGAGRDRDGRGNAMWPESVVVGQIDRSGEKVKT--KAGSXXXXXXXXXXXXXXXEPDFVYTRKTRWLLSRLRMWDKHREAEWEATALEADDEV 993
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-26_001900.1 |
| Exons | 2 |
| Model size | 1700 |
| Cds size | 1698 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13870.2844.1 >prot_E-fasciculatus_F_contig13870.2844.1 ID=prot_E-fasciculatus_F_contig13870.2844.1|Name=mRNA_E-fasciculatus_F_contig13870.2844.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=566bp
SVAASPASGARAAGGDGSISSAATSACPVARITAEPTPPAAAAAAAPPAA EAAPQQDQTSSVTAAPESTRPDAPQVDITPRDRASQASSAEGSGAGAGAG GGGGATAGDSAAGRDLWSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGT YLVKLSLGGKPTRVASDLLFSYTPSPEPAFRGRRRSTASRRRDTAEGGGA REVDPSNGWVPSSPSSCSSSASPSPKRTTTSKGRRGRSSGSSGGAAGSDK SSSPRRSRRAVKKKSGDGTAAAAAAAAASSDPAATGAEDDDGGDAAHAAV MTAARPGDRARVLYDDTDWYMATVVGLHRGSSVTVRFDDGSEARVTLSPG DAEICADDALAPTAASSSEPPPPTPTPTPTTSGRSRGGGGGRRRLGRGVV SKGVRTLGPGGRVLGEGEGKALTEERARALLDTAPQKLVGLVYQEHHRGY GGWWETVVTEVSEERMGGTGGSDKDGDGGGDAMWPELVVVGQMDRSGENI KVVGSAATASSAALSGEGGDDDDEPDFVYTRKTKSLLSRLRTWDKHREAE WEATALEADDEVAATA back to topmRNA from alignment at E-fasciculatus_F_contig13870:1064..3503+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13870.2844.1 ID=mRNA_E-fasciculatus_F_contig13870.2844.1|Name=mRNA_E-fasciculatus_F_contig13870.2844.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2440bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13870:1064..3503+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) AGCGTGGCGGCGTCGCCGGCTTCCGGGGCAAGGGCAGCAGGTGGTGACGG
TAGCATCAGCAGCGCCGCCACCTCCGCTTGCCCTGTCGCGCGGATCACGG
CTGAACCTACTCCGCCCGCTGCTGCTGCTGCTGCTGCTCCCCCCGCCGCC
GAAGCCGCACCGCAACAAGACCAAACTTCCTCCGTCACCGCCGCTCCTGA
ATCGACACGACCGGACGCCCCGCAGGTGGACATCACCCCGCGAGACCGGG
CGTCGCAAGCCAGCTCCGCCGAGGGCAGCGGGGCGGGGGCCGGTGCCGGC
GGCGGCGGCGGGGCGACGGCTGGAGATAGTGCTGCGGGGAGAGACTTGTG
GAGCAAGGGCGACTTGGTGGTGCTGAAGGCGCGCACGTCAAAGGGGATGA
ACAAGCTGGGGGGTGTTGCGCGGGTGCTGGAGGTCTTCGAGGACGGGACT
TACCTTGTTAAGCTCAGCTTGGGTGAGTGTTTTTTTTTTGTAGCGTGCGG
AACAGGGATGCACACCACCAACCCTCCTGCACCTCTTTCTGGGGGGGTTA
TGGTCTATAGGGTGTAGCTTGGATGGCGCATTCATGGTAACATGTTGGTA
GGGTTTGTCCGAACCCTTGGCGTAACCTGTGGTGTGTGCCGTGAGACGTT
CATGTCATGCTTCAAGGAGTGGCCATCCTCCCAAATGGCAGACAAAGCTC
GGAGCCTCTCGCCGGTGATGATGCTCAGCTGGGACTATTTAGTATCCGAT
GTTGTACCATGCAAACACCCAGGGGGGGAGAATGAAGTAACAGCAAACCC
GAGAACCTTGGCAACGCGCATGTAAAGAGGAAAAGAGTTAGGCGAAGCGT
CGTGAAAATTGGCAATAAAGCCTTTCTCCGTCGACACCTACAATATGGCC
AGCGTGTTCGACGAGGCTGGCCTAGGTGCACTCGACCCGTCGTCGTGGTA
TCGTATCGCTGCCGTTTGCGACCTCGATTCCCGATCATCACCACCCTGAC
CTTCCACCTCTCGAGACCGACAGCCTTTAATCCTTGTCGTGCGCGCGCCC
CAAGCTATTTATCTGACGCACGAAGAGAATGGAGCAGCACATATTATGTT
ATGTGTGCATCTCCATACATGTTTGTTTAGCTTTGTCCATTGATTCCGTG
CAACTCCCCCCCCCCCCCCTCCATCCCGGACGAACCCCGCGGCATGTGAT
TTTCTCGCTCCCAGGCGGAAAGCCGACCCGCGTGGCGAGCGACCTCCTGT
TCAGCTACACCCCGTCTCCCGAGCCAGCCTTCCGCGGAAGGAGGAGGTCC
ACGGCTTCCCGCCGTCGAGACACGGCCGAGGGTGGGGGGGCGCGTGAAGT
GGACCCCAGCAACGGGTGGGTCCCGTCCTCCCCGTCGTCTTGTTCCTCCT
CCGCCTCCCCTTCCCCCAAGCGGACGACGACGAGCAAGGGTCGGCGTGGC
CGCAGCAGCGGCAGCAGTGGGGGTGCGGCCGGCAGCGACAAGTCGTCGTC
CCCGAGACGCTCCCGCCGTGCTGTTAAGAAGAAGAGCGGCGATGGTACCG
CCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCTGACCCCGCTGCTACCGGT
GCTGAGGACGACGACGGCGGCGACGCTGCCCACGCCGCCGTGATGACGGC
CGCTCGGCCGGGGGACCGCGCGAGGGTGCTCTACGACGACACGGACTGGT
ACATGGCCACCGTCGTGGGCCTCCACCGGGGCTCCTCGGTCACCGTCCGC
TTCGACGACGGCAGTGAGGCTAGGGTAACGTTAAGCCCCGGCGACGCCGA
GATCTGCGCGGACGACGCGCTAGCGCCGACGGCAGCGAGCAGCAGCGAGC
CGCCGCCGCCTACGCCTACGCCTACGCCTACTACCTCTGGGCGCTCCCGA
GGGGGGGGCGGCGGTAGGAGGAGGCTCGGGAGAGGGGTCGTGTCCAAGGG
GGTGCGGACGTTGGGGCCCGGCGGTCGGGTTCTCGGGGAGGGAGAGGGCA
AGGCGCTGACGGAGGAGAGGGCGAGGGCCCTGCTCGACACGGCGCCGCAG
AAGCTGGTGGGGCTGGTGTACCAGGAGCACCACCGGGGTTACGGCGGGTG
GTGGGAGACGGTAGTGACGGAGGTGTCCGAGGAGCGGATGGGCGGCACCG
GCGGAAGCGACAAGGATGGGGATGGCGGGGGAGACGCGATGTGGCCGGAG
TTGGTGGTGGTGGGGCAGATGGACCGCTCGGGGGAGAACATTAAGGTCGT
CGGTTCCGCCGCTACCGCCAGTTCCGCCGCGCTCTCCGGAGAAGGCGGCG
ACGACGACGATGAGCCGGATTTCGTCTACACCCGGAAGACGAAGTCGCTG
CTCTCACGCCTGCGGACGTGGGACAAGCACCGGGAGGCCGAGTGGGAGGC
GACGGCGCTGGAGGCAGACGACGAGGTTGCTGCTACGGCC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13870:1064..3503+ >mRNA_E-fasciculatus_F_contig13870.2844.1 ID=mRNA_E-fasciculatus_F_contig13870.2844.1|Name=mRNA_E-fasciculatus_F_contig13870.2844.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13870:1064..3503+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) AGCGTGGCGGCGTCGCCGGCTTCCGGGGCAAGGGCAGCAGGTGGTGACGG TAGCATCAGCAGCGCCGCCACCTCCGCTTGCCCTGTCGCGCGGATCACGG CTGAACCTACTCCGCCCGCTGCTGCTGCTGCTGCTGCTCCCCCCGCCGCC GAAGCCGCACCGCAACAAGACCAAACTTCCTCCGTCACCGCCGCTCCTGA ATCGACACGACCGGACGCCCCGCAGGTGGACATCACCCCGCGAGACCGGG CGTCGCAAGCCAGCTCCGCCGAGGGCAGCGGGGCGGGGGCCGGTGCCGGC GGCGGCGGCGGGGCGACGGCTGGAGATAGTGCTGCGGGGAGAGACTTGTG GAGCAAGGGCGACTTGGTGGTGCTGAAGGCGCGCACGTCAAAGGGGATGA ACAAGCTGGGGGGTGTTGCGCGGGTGCTGGAGGTCTTCGAGGACGGGACT TACCTTGTTAAGCTCAGCTTGGAGCGTGGCGGCGTCGCCGGCTTCCGGGG CAAGGGCAGCAGGTGGTGACGGTAGCATCAGCAGCGCCGCCACCTCCGCT TGCCCTGTCGCGCGGATCACGGCTGAACCTACTCCGCCCGCTGCTGCTGC TGCTGCTGCTCCCCCCGCCGCCGAAGCCGCACCGCAACAAGACCAAACTT CCTCCGTCACCGCCGCTCCTGAATCGACACGACCGGACGCCCCGCAGGTG GACATCACCCCGCGAGACCGGGCGTCGCAAGCCAGCTCCGCCGAGGGCAG CGGGGCGGGGGCCGGTGCCGGCGGCGGCGGCGGGGCGACGGCTGGAGATA GTGCTGCGGGGAGAGACTTGTGGAGCAAGGGCGACTTGGTGGTGCTGAAG GCGCGCACGTCAAAGGGGATGAACAAGCTGGGGGGTGTTGCGCGGGTGCT GGAGGTCTTCGAGGACGGGACTTACCTTGTTAAGCTCAGCTTGGGCGGAA AGCCGACCCGCGTGGCGAGCGACCTCCTGTTCAGCTACACCCCGTCTCCC GAGCCAGCCTTCCGCGGAAGGAGGAGGTCCACGGCTTCCCGCCGTCGAGA CACGGCCGAGGGTGGGGGGGCGCGTGAAGTGGACCCCAGCAACGGGTGGG TCCCGTCCTCCCCGTCGTCTTGTTCCTCCTCCGCCTCCCCTTCCCCCAAG CGGACGACGACGAGCAAGGGTCGGCGTGGCCGCAGCAGCGGCAGCAGTGG GGGTGCGGCCGGCAGCGACAAGTCGTCGTCCCCGAGACGCTCCCGCCGTG CTGTTAAGAAGAAGAGCGGCGATGGTACCGCCGCCGCCGCCGCCGCCGCC GCCGCCTCCTCTGACCCCGCTGCTACCGGTGCTGAGGACGACGACGGCGG CGACGCTGCCCACGCCGCCGTGATGACGGCCGCTCGGCCGGGGGACCGCG CGAGGGTGCTCTACGACGACACGGACTGGTACATGGCCACCGTCGTGGGC CTCCACCGGGGCTCCTCGGTCACCGTCCGCTTCGACGACGGCAGTGAGGC TAGGGTAACGTTAAGCCCCGGCGACGCCGAGATCTGCGCGGACGACGCGC TAGCGCCGACGGCAGCGAGCAGCAGCGAGCCGCCGCCGCCTACGCCTACG CCTACGCCTACTACCTCTGGGCGCTCCCGAGGGGGGGGCGGCGGTAGGAG GAGGCTCGGGAGAGGGGTCGTGTCCAAGGGGGTGCGGACGTTGGGGCCCG GCGGTCGGGTTCTCGGGGAGGGAGAGGGCAAGGCGCTGACGGAGGAGAGG GCGAGGGCCCTGCTCGACACGGCGCCGCAGAAGCTGGTGGGGCTGGTGTA CCAGGAGCACCACCGGGGTTACGGCGGGTGGTGGGAGACGGTAGTGACGG AGGTGTCCGAGGAGCGGATGGGCGGCACCGGCGGAAGCGACAAGGATGGG GATGGCGGGGGAGACGCGATGTGGCCGGAGTTGGTGGTGGTGGGGCAGAT GGACCGCTCGGGGGAGAACATTAAGGTCGTCGGTTCCGCCGCTACCGCCA GTTCCGCCGCGCTCTCCGGAGAAGGCGGCGACGACGACGATGAGCCGGAT TTCGTCTACACCCGGAAGACGAAGTCGCTGCTCTCACGCCTGCGGACGTG GGACAAGCACCGGGAGGCCGAGTGGGAGGCGACGGCGCTGGAGGCAGACG ACGAGGTTGCTGCTACGGCCGCGGAAAGCCGACCCGCGTGGCGAGCGACC TCCTGTTCAGCTACACCCCGTCTCCCGAGCCAGCCTTCCGCGGAAGGAGG AGGTCCACGGCTTCCCGCCGTCGAGACACGGCCGAGGGTGGGGGGGCGCG TGAAGTGGACCCCAGCAACGGGTGGGTCCCGTCCTCCCCGTCGTCTTGTT CCTCCTCCGCCTCCCCTTCCCCCAAGCGGACGACGACGAGCAAGGGTCGG CGTGGCCGCAGCAGCGGCAGCAGTGGGGGTGCGGCCGGCAGCGACAAGTC GTCGTCCCCGAGACGCTCCCGCCGTGCTGTTAAGAAGAAGAGCGGCGATG GTACCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCTGACCCCGCTGCT ACCGGTGCTGAGGACGACGACGGCGGCGACGCTGCCCACGCCGCCGTGAT GACGGCCGCTCGGCCGGGGGACCGCGCGAGGGTGCTCTACGACGACACGG ACTGGTACATGGCCACCGTCGTGGGCCTCCACCGGGGCTCCTCGGTCACC GTCCGCTTCGACGACGGCAGTGAGGCTAGGGTAACGTTAAGCCCCGGCGA CGCCGAGATCTGCGCGGACGACGCGCTAGCGCCGACGGCAGCGAGCAGCA GCGAGCCGCCGCCGCCTACGCCTACGCCTACGCCTACTACCTCTGGGCGC TCCCGAGGGGGGGGCGGCGGTAGGAGGAGGCTCGGGAGAGGGGTCGTGTC CAAGGGGGTGCGGACGTTGGGGCCCGGCGGTCGGGTTCTCGGGGAGGGAG AGGGCAAGGCGCTGACGGAGGAGAGGGCGAGGGCCCTGCTCGACACGGCG CCGCAGAAGCTGGTGGGGCTGGTGTACCAGGAGCACCACCGGGGTTACGG CGGGTGGTGGGAGACGGTAGTGACGGAGGTGTCCGAGGAGCGGATGGGCG GCACCGGCGGAAGCGACAAGGATGGGGATGGCGGGGGAGACGCGATGTGG CCGGAGTTGGTGGTGGTGGGGCAGATGGACCGCTCGGGGGAGAACATTAA GGTCGTCGGTTCCGCCGCTACCGCCAGTTCCGCCGCGCTCTCCGGAGAAG GCGGCGACGACGACGATGAGCCGGATTTCGTCTACACCCGGAAGACGAAG TCGCTGCTCTCACGCCTGCGGACGTGGGACAAGCACCGGGAGGCCGAGTG GGAGGCGACGGCGCTGGAGGCAGACGACGAGGTTGCTGCTACGGCC back to top
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