mRNA_E-fasciculatus_F_contig1387.2843.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1387.2843.1 vs. uniprot
Match: D8LDR3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR3_ECTSI) HSP 1 Score: 989 bits (2556), Expect = 0.000e+0 Identity = 518/624 (83.01%), Postives = 531/624 (85.10%), Query Frame = 1
Query: 310 MVGKAFGIAVALAATAAPRARAEQVLVASLVDDITYADIVPSGTCADGCTRYEQAVAHVTGTPDQVDCGLQTVSPFDSSTPEPGLLRALIYCEDSSGTLIEQGTRPCIFDVCVDFSWNVGDGDGEGELTYEVVVERASKPSAPHTIYVDLSVAIDPTSTNTNVDSCQYNGTCDPQVCETPNNYGAVISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYKFNTTATSAFADDMGWGICDNYGTAGEGLIFTVLNGACDGGSATPIARETAEETSDAAGSYCVLPAPESDEDYRTSTCTALSSGMKIDGVGLYYDDRCNSADYSGCYARSIPACRLCFYDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGTDEGVIIGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGHAGTSAFPESPSGGMSGGGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVGGXXXXXXXXXXXXXXVGAGAHVGGGGPSGELEKISAEQANVSTTAQSTPSGVNGNATGTGGGGKKSGNAPRSTVLDGRLVAQGYATSDMGRPTSLTSGTSGAATAGGGEG 2181
M+ KAFGIAVALAATAAPR RAEQVLVASLVDDITY DIVPSGTCADGC RYEQAVAHVTGTPDQ+DCGLQTVSPFDSSTPEPGLLRALIYCEDSSGTLIEQGTRPC+FDVCVDFSW+ GD ELTYE +NGTC+ Q CE PN YGAVISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEY FNTTATSAFADDMGWGICDNYG AGEGL FTVLNGACDG SA IAR TAEETSDA SYCVLPAPESD DYRTSTCTALSSGMKIDGVGL+YDDRCNSADYSGC+ARSIPACRLCF+DKDLW+SRFP+SRVPDWELCPCCVADTLGIDCASGGGGGTDEGVIIGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGH GTSAFPESP GGM G GNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVGG XXXXXX VGA AHVGGGGPSGELEKISAEQANVSTTAQSTPSG N K+GNAPRSTVLDGRLVAQGY T+DM RPTS SG S AATA GG G
Sbjct: 1 MISKAFGIAVALAATAAPRGRAEQVLVASLVDDITYTDIVPSGTCADGCVRYEQAVAHVTGTPDQLDCGLQTVSPFDSSTPEPGLLRALIYCEDSSGTLIEQGTRPCVFDVCVDFSWSSGDXXXXXELTYE------------------------------------FNGTCEVQTCEEPNAYGAVISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYMFNTTATSAFADDMGWGICDNYGAAGEGLKFTVLNGACDGESAELIARATAEETSDAGDSYCVLPAPESDVDYRTSTCTALSSGMKIDGVGLFYDDRCNSADYSGCFARSIPACRLCFWDKDLWLSRFPSSRVPDWELCPCCVADTLGIDCASGGGGGTDEGVIIGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGHPGTSAFPESPGGGMGGSGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVGGGXXXXXXG------VGARAHVGGGGPSGELEKISAEQANVSTTAQSTPSGANXXXXXXXXXXXKAGNAPRSTVLDGRLVAQGYTTTDMERPTS--SGPSRAATAAGGGG 580
BLAST of mRNA_E-fasciculatus_F_contig1387.2843.1 vs. uniprot
Match: A0A6H5L5M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M6_9PHAE) HSP 1 Score: 895 bits (2312), Expect = 0.000e+0 Identity = 454/562 (80.78%), Postives = 475/562 (84.52%), Query Frame = 1
Query: 25 TPAF*FVRP---PPLPKTAVAPTGKASEALGAPIGDSSRPSTRARERQRAEAHQFFGTLVCC*VCFQKTESVVRFSVRKQQAPRQRERASWESAPLSIMVGKAFGIAVALAATAAPRARAEQVLVASLVDDITYADIVPSGTCADGCTRYEQAVAHVTGTPDQVDCGLQTVSPFDSSTPEPGLLRALIYCEDSSGTLIEQGTRPCIFDVCVDFSWNVGDGDGEGELTYEVVVERASKPSAPHTIYVDLSVAIDPTSTNTNVDSCQYNGTCDPQVCETPNNYGAVISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYKFNTTATSAFADDMGWGICDNYGTAGEGLIFTVLNGACDGGSATPIARETAEETSDAAGSYCVLPAPESDEDYRTSTCTALSSGMKIDGVGLYYDDRCNSADYSGCYARSIPACRLCFYDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGTDEGVIIGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGHAGTSAFPESPS 1701
TPAF P L KTAV G ASE LGAPIGDSSR R+RA A +F CC V Q RF + +RE + LSIM+GKAFGIAVALAA AAPRARAEQ+LVASLVDDITYADIVPSGTCADGC RYEQAVAHVTGTPDQ+DC LQTVSPFDSSTPEPGLLRALIYCEDSSGTLIEQGTRPC+FDVCVDFSW+ GD ELTYEV VER SKPSAPHTIYVDLSVAIDPTSTNTN DSCQYNGTC+ Q CE PN YGAVISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEY FNTTATSAFADDMGWGICDNYG AGEGL FTVLNGACDG SA IAR TAEETSDA SYCVLPAPESDEDYRTSTCTALSSGMKIDGVGL+YDDRCNSADYSGC+ARSIPACRLCF+DKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGTD+GVIIG+SVGIAGVIAIACCLSCAFGPTIVRF RR + K+ E+ LD+ G GTSAFPESP+
Sbjct: 15 TPAFLXXXXXTSPALAKTAVVLAGTASEPLGAPIGDSSRTLDARNARERAAAQEFGNPSRCCFVSKQNRWCDFRFGKAGENTT-ERELGARS---LSIMIGKAFGIAVALAAIAAPRARAEQILVASLVDDITYADIVPSGTCADGCVRYEQAVAHVTGTPDQLDCDLQTVSPFDSSTPEPGLLRALIYCEDSSGTLIEQGTRPCVFDVCVDFSWSSGDXXXXXELTYEVRVERDSKPSAPHTIYVDLSVAIDPTSTNTNADSCQYNGTCEVQTCEAPNAYGAVISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYMFNTTATSAFADDMGWGICDNYGAAGEGLKFTVLNGACDGESAELIARATAEETSDAGDSYCVLPAPESDEDYRTSTCTALSSGMKIDGVGLFYDDRCNSADYSGCFARSIPACRLCFWDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGTDDGVIIGISVGIAGVIAIACCLSCAFGPTIVRFFRRFQNKRLDEEDLDMAGVLGTSAFPESPT 572
BLAST of mRNA_E-fasciculatus_F_contig1387.2843.1 vs. uniprot
Match: A0A6H5L443_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L443_9PHAE) HSP 1 Score: 255 bits (651), Expect = 1.130e-76 Identity = 143/171 (83.63%), Postives = 149/171 (87.13%), Query Frame = 1
Query: 1621 MRKKKHAEDQLDLDGHAGTSAFPESPSGGMSGGGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVGGXXXXXXXXXXXXXXVGAGAHVGGGGPSGELEKISAEQANVSTTAQSTPSGVNGNATGTGGGGKKSGNAPRSTVLDGRLVAQGYATSDMGRPTS 2133
MRKKKHAEDQLDLDGH GTSAFP+SP GGGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNV G XXXXX AGAHVGGGGPSGELEKISAEQANVSTTAQSTPSG NG+ GTGGGG+K+GNAPRSTVLDGRLVA+GY T+DMGRPTS
Sbjct: 1 MRKKKHAEDQLDLDGHPGTSAFPDSP-----GGGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVAGGXXXXXV---------AGAHVGGGGPSGELEKISAEQANVSTTAQSTPSGANGSGVGTGGGGRKAGNAPRSTVLDGRLVAKGYTTTDMGRPTS 157
BLAST of mRNA_E-fasciculatus_F_contig1387.2843.1 vs. uniprot
Match: A0A6H5KLX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX8_9PHAE) HSP 1 Score: 225 bits (574), Expect = 1.870e-58 Identity = 154/434 (35.48%), Postives = 217/434 (50.00%), Query Frame = 1
Query: 394 SLVDDITYADIVPSGTCADGCTR-YEQAVAHVTGTPDQVDCGLQTVSPFDSSTPEP--GLLRALIYCEDSSGTLIEQGTRPCIFDVCVDFSWNVGDGDGEGEL-TYEVVVERASKPSAPHTI--------YVDLSVAIDPTSTNTNVDSCQYNGTC-DPQVCETPNNYGA-VISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYKFNTTATSAFADDMGWGICDNYGTAGEGLIFTVLNGACD--GGSATPIARETAEETSDAAGSYCVLPAPESDEDYRTSTCTALSSGM-KIDG--VGLYYDDRC--NSADYSGCYARSIPACRLCFYDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGT--DEGVI-----------------IGVSVGIAGVIAIACC 1575
S D I ADI P G C GC R A + G +VDC L+ + D + + G L + C +++G L+ Q C++ VCV W +GEL TY VVVE A +PSA HT+ Y DL D T + + C+ +C D C P+ Y VI+ TDEYGDGWVGG+ NTW LTD ++ +V ++GTL D H S K CL DG+Y F TTA +A++ + W +C+ G G L F + N AC+ S+ T ETS G +C LPA + C L G+ ++ G VG+YYD+ C +GC + CR+CF +++ W++ FP+ R PDW CPCCVAD L + C +G GT DE ++ +G +G+ + A+ CC
Sbjct: 58 STSDAIVAADIEPGGPCDAGCVRTVVNAEVYAAG---EVDCELRVENLLDHTDEDVLGGSLNVVHSCTNAAGDLLYQDQGECLYSVCVTAEW-------KGELLTYTVVVEHA-EPSAAHTVLIEVYMNEYEDLLDRPDVTVVSDSSVLCELGTSCADSSAC--PSGYSELVITTTDEYGDGWVGGLPDRSNTWTLTDASSSSVVAEGTLHDWHFSGMTKLCLQDGDYSFETTADAAWSSESAWNVCEVDGGMGGSLDFEMSNSACNVLDSSSKDGPPATVAETS--LGDFCALPADD--------PCVDLDVGVAEVRGPSVGMYYDESCLEGGGGDTGCGGGGVTVCRICFVNREFWLADFPDERYPDWLDCPCCVADALVVTCQAGVETGTASDESIVEKAEAFYWEGGTLLCASLGGLIGLGLITALCCC 468
BLAST of mRNA_E-fasciculatus_F_contig1387.2843.1 vs. uniprot
Match: D7G003_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G003_ECTSI) HSP 1 Score: 214 bits (544), Expect = 1.250e-54 Identity = 136/413 (32.93%), Postives = 200/413 (48.43%), Query Frame = 1
Query: 559 GLLRALIYCEDSSGTLIEQGTRPCIFDVCVDFSWNVGDGDGEGEL-TYEVVVERASKPSAPHTIYVDLSV-----AIDPTSTNTNVDS---CQYNGTCDPQVCETPNNYGA-VISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYKFNTTATSAFADDMGWGICDNYGTAGEGLIFTVLNGACDGGSATPIARETAEETSDAAGSYCVLPAPESDEDYRTSTCTALSSGM-KIDG--VGLYYDDRC--NSADYSGCYARSIPACRLCFYDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGT--DEGVI-----------------IGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGHAGTSAFPES 1695
G L + C ++ G L+ Q C++ VCV W +GEL TY VVVE A +PSA HT+ V++ + +D DS C+ +C P+ Y VI+ TDEYGDGWVGG+ NTW LTD + +V ++GTL D H S K CL DG+Y F TTA +A++ D W +C+ G G L F V + AC+ ++ A + ++G C LPA ++ C G+ ++ G VG+YYD+ C +GC + ACR+CF +++ W++ FP+ R PDW CPCCVAD LG+ C GG GT DE ++ +G +G+ + A+ CC + + R +++ DG P S
Sbjct: 15 GSLNVVHSCTNAEGDLLYQDQGECLYSVCVTAEW-------KGELLTYTVVVEHA-EPSAAHTVLVEVYMNEYQDLLDRPDVTVVADSSVLCELGTSCAASSA-CPSGYSELVITTTDEYGDGWVGGLPDRSNTWALTDAASSSVVAEGTLHDWHFSGMTKLCLQDGDYSFETTAYTAWSSDSAWNVCEVDGGMGGSLEFEVSSSACNVLDSSSKDGPPATDAETSSGDLCALPADDA--------CVGFDVGVAEVSGPSVGMYYDEACLEGGGGNTGCGGGGVTACRICFVNREFWLADFPDERYPDWLDCPCCVADALGVTCQGGGETGTASDESIVEQAEAFYWEGGTLLYASLGGLIGLGLITALCCCRDIRKANQLALSYKHFRAAAVTQNKYKEDGDTSPDVSPPS 410 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1387.2843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1387.2843.1 >prot_E-fasciculatus_F_contig1387.2843.1 ID=prot_E-fasciculatus_F_contig1387.2843.1|Name=mRNA_E-fasciculatus_F_contig1387.2843.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=624bp MVGKAFGIAVALAATAAPRARAEQVLVASLVDDITYADIVPSGTCADGCTback to top mRNA from alignment at E-fasciculatus_F_contig1387:9695..16984+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1387.2843.1 ID=mRNA_E-fasciculatus_F_contig1387.2843.1|Name=mRNA_E-fasciculatus_F_contig1387.2843.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1387:9695..16984+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1387:9695..16984+ >mRNA_E-fasciculatus_F_contig1387.2843.1 ID=mRNA_E-fasciculatus_F_contig1387.2843.1|Name=mRNA_E-fasciculatus_F_contig1387.2843.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1387:9695..16984+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |